Wall clock time and date at job start Fri Apr 10 2020 22:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00021 * 2 1 4 4 C 1.53002 * 109.47098 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47001 * 65.00287 * 4 3 2 6 6 C 1.46898 * 110.99878 * 188.95408 * 5 4 3 7 7 N 1.36596 * 110.99882 * 64.99671 * 5 4 3 8 8 C 1.34775 * 120.00260 * 239.99814 * 7 5 4 9 9 O 1.21287 * 119.99798 * 0.02562 * 8 7 5 10 10 C 1.50705 * 120.00246 * 180.02562 * 8 7 5 11 11 C 1.50695 * 109.46992 * 180.02562 * 10 8 7 12 12 C 1.38299 * 119.93247 * 90.00201 * 11 10 8 13 13 C 1.38101 * 120.07425 * 179.97438 * 12 11 10 14 14 C 1.38886 * 119.92536 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.06440 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53777 * 15 14 13 17 17 H 1.07993 * 120.00518 * 354.94289 * 16 15 14 18 18 C 1.38663 * 119.99751 * 174.94575 * 16 15 14 19 19 N 1.31556 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47517 * 59.99414 * 20 18 16 22 22 H 1.48505 * 109.47332 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46989 * 299.99567 * 20 18 16 24 24 C 1.38874 * 119.86623 * 0.27854 * 14 13 12 25 25 C 1.38106 * 119.92542 * 359.44577 * 24 14 13 26 26 H 1.08997 * 109.47413 * 300.00220 * 1 2 3 27 27 H 1.09005 * 109.47225 * 59.99773 * 1 2 3 28 28 H 1.08998 * 109.47231 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46980 * 60.00181 * 3 2 1 30 30 H 1.08993 * 109.47415 * 300.00293 * 3 2 1 31 31 H 1.08997 * 109.47000 * 305.00079 * 4 3 2 32 32 H 1.09001 * 109.47028 * 185.00049 * 4 3 2 33 33 H 1.09005 * 109.47001 * 296.04473 * 6 5 4 34 34 H 1.09002 * 109.47230 * 56.04153 * 6 5 4 35 35 H 1.08995 * 109.46893 * 176.04594 * 6 5 4 36 36 H 0.97005 * 120.00135 * 60.00591 * 7 5 4 37 37 H 1.08998 * 109.46621 * 60.00483 * 10 8 7 38 38 H 1.08996 * 109.47266 * 300.00146 * 10 8 7 39 39 H 1.07999 * 119.96503 * 0.02562 * 12 11 10 40 40 H 1.07992 * 120.03608 * 180.02562 * 13 12 11 41 41 H 0.96996 * 120.00178 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.03745 * 179.72497 * 24 14 13 43 43 H 1.07997 * 119.96326 * 180.27708 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9779 0.5623 -1.2543 6 6 5.4092 0.2359 -1.2041 7 7 3.6957 1.3635 -2.3241 8 6 2.8893 0.9161 -3.3069 9 8 2.4138 -0.1977 -3.2414 10 6 2.5784 1.7998 -4.4875 11 6 1.6619 1.0690 -5.4344 12 6 0.2909 1.1751 -5.2876 13 6 -0.5517 0.5070 -6.1541 14 6 -0.0208 -0.2726 -7.1736 15 8 -0.8465 -0.9301 -8.0272 16 6 -2.1682 -0.6944 -7.9039 17 1 -2.5332 -0.0727 -7.0997 18 6 -3.0591 -1.2502 -8.8095 19 7 -2.6146 -2.0072 -9.7893 20 14 -4.8902 -0.9230 -8.6390 21 1 -5.1435 0.5370 -8.7366 22 1 -5.6218 -1.6254 -9.7238 23 1 -5.3613 -1.4200 -7.3213 24 6 1.3564 -0.3823 -7.3146 25 6 2.1936 0.2929 -6.4483 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8507 0.5685 0.8427 32 1 3.9785 2.1766 0.0902 33 1 5.9886 1.1550 -1.1149 34 1 5.6063 -0.4027 -0.3430 35 1 5.6950 -0.2865 -2.1169 36 1 4.0757 2.2545 -2.3764 37 1 3.5040 2.0566 -5.0027 38 1 2.0906 2.7108 -4.1409 39 1 -0.1214 1.7818 -4.4949 40 1 -1.6223 0.5907 -6.0391 41 1 -3.2378 -2.3963 -10.4226 42 1 1.7722 -0.9913 -8.1035 43 1 3.2647 0.2116 -6.5601 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288461595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:08 Heat of formation + Delta-G solvation = -40.254771 kcal Electronic energy + Delta-G solvation = -25207.355276 eV Core-core repulsion = 21448.345634 eV Total energy + Delta-G solvation = -3759.009642 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.04895 -38.92885 -37.94467 -36.99814 -36.16459 -32.54477 -32.19688 -31.05023 -30.10444 -30.04682 -26.78412 -26.39241 -25.23336 -24.50371 -22.40565 -21.90012 -20.92399 -20.07144 -17.91413 -17.50163 -16.95265 -16.83975 -16.57388 -16.21452 -15.19670 -14.98188 -14.73488 -14.60382 -14.35616 -13.92526 -13.82679 -13.66994 -13.41469 -13.28818 -12.97269 -12.63356 -12.62374 -12.42621 -12.03517 -11.81536 -11.75864 -11.44729 -11.20037 -11.11495 -10.78155 -10.69126 -10.58579 -10.38697 -9.66486 -9.52268 -9.26702 -9.22472 -8.92503 -8.75870 -8.07265 -7.09202 -6.38885 -3.97368 2.26885 2.32957 2.78374 2.96438 3.16978 3.18355 3.20746 3.73009 4.01952 4.10433 4.60424 4.72970 4.95992 4.99819 5.04423 5.12568 5.16860 5.17487 5.20028 5.31432 5.32509 5.37209 5.40375 5.42333 5.58726 5.60719 5.70787 5.76249 5.79168 5.92277 6.28771 6.47931 6.49582 6.77473 6.98709 7.11913 7.15769 7.30750 7.34136 7.43915 7.50050 7.53039 7.91514 8.06466 8.71515 9.06712 9.78182 10.79326 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019013 B = 0.003053 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.335150 B = 9168.551057 C =10154.380775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.368 6.368 3 C 0.069 3.931 4 C 0.039 3.961 5 N -0.288 5.288 6 C 0.008 3.992 7 N -0.595 5.595 8 C 0.519 3.481 9 O -0.482 6.482 10 C -0.075 4.075 11 C -0.169 4.169 12 C -0.055 4.055 13 C -0.232 4.232 14 C 0.157 3.843 15 O -0.178 6.178 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.191 4.191 25 C -0.058 4.058 26 H 0.033 0.967 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.030 0.970 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.373 0.627 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.270 0.730 42 H 0.116 0.884 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.613 11.412 18.495 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.286 6.286 3 C -0.009 4.009 4 C -0.089 4.089 5 N -0.104 5.104 6 C -0.140 4.140 7 N -0.344 5.344 8 C 0.305 3.695 9 O -0.351 6.351 10 C -0.116 4.116 11 C -0.170 4.170 12 C -0.074 4.074 13 C -0.252 4.252 14 C 0.104 3.896 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.211 4.211 25 C -0.076 4.076 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.211 0.789 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.143 0.857 41 H 0.080 0.920 42 H 0.134 0.866 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.017 9.654 18.062 23.745 hybrid contribution -0.394 1.625 0.450 1.732 sum 11.623 11.279 18.512 24.597 Atomic orbital electron populations 1.22699 0.81279 1.02926 0.99337 1.88011 1.19208 1.26236 1.95153 1.22391 0.92730 0.86043 0.99689 1.22653 0.95057 0.98584 0.92640 1.62866 1.17082 1.34562 0.95928 1.22890 0.86820 1.00222 1.04053 1.45686 1.52889 1.15851 1.19981 1.20995 0.77624 0.88583 0.82263 1.90765 1.48033 1.19839 1.76418 1.20374 1.00499 0.97661 0.93075 1.18591 0.92995 1.05939 0.99492 1.20474 0.92452 0.97569 0.96872 1.21086 1.00270 1.04553 0.99253 1.19383 0.90724 0.89984 0.89533 1.83976 1.17662 1.56913 1.49631 1.21277 0.78765 1.32721 1.13969 0.89163 1.25276 1.00216 0.96133 0.94893 1.70030 1.35574 1.30117 1.14194 0.85794 0.80583 0.78777 0.78343 1.19548 1.20313 1.19511 1.20151 0.90778 1.06524 1.03608 1.20394 0.97891 0.95339 0.94025 0.94816 0.94044 0.89574 0.93310 0.93408 0.88678 0.92817 0.95161 0.90035 0.90512 0.78883 0.89038 0.89240 0.87996 0.85656 0.92029 0.86560 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -5.15 10.65 -35.23 -0.38 -5.52 16 3 C 0.07 0.72 6.09 37.16 0.23 0.95 16 4 C 0.04 0.34 5.57 -3.82 -0.02 0.31 16 5 N -0.29 -3.22 4.52 -121.13 -0.55 -3.76 16 6 C 0.01 0.07 9.98 60.06 0.60 0.67 16 7 N -0.59 -6.29 4.02 31.22 0.13 -6.16 16 8 C 0.52 7.48 7.80 -10.98 -0.09 7.40 16 9 O -0.48 -9.69 16.36 5.55 0.09 -9.60 16 10 C -0.07 -0.94 5.83 -29.04 -0.17 -1.11 16 11 C -0.17 -2.98 4.38 -104.58 -0.46 -3.44 16 12 C -0.06 -1.06 9.69 -39.61 -0.38 -1.45 16 13 C -0.23 -5.29 9.17 -39.39 -0.36 -5.65 16 14 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 15 O -0.18 -5.27 9.76 0.05 0.00 -5.27 16 16 C -0.39 -11.24 9.49 30.89 0.29 -10.94 16 17 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 18 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 19 N -0.86 -25.89 13.67 55.48 0.76 -25.13 16 20 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 C -0.19 -4.27 9.99 -39.39 -0.39 -4.66 16 25 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 26 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.54 7.48 -51.93 -0.39 0.15 16 31 H 0.09 0.76 8.03 -51.93 -0.42 0.34 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.08 0.59 8.06 -51.93 -0.42 0.18 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.37 2.60 8.83 -185.15 -1.63 0.97 16 37 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.09 0.89 8.08 -51.93 -0.42 0.48 16 39 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 43 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -36.74 369.57 -7.41 -44.15 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.63 Total: 2.98 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -0.38 Total: -13.17 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.34 Total: -35.06 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.28 Total: -20.39 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.74 -7.41 -44.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288461595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.899 kcal (2) G-P(sol) polarization free energy of solvation -36.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds