Wall clock time and date at job start Fri Apr 10 2020 22:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00021 * 2 1 4 4 C 1.53002 * 109.47098 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47001 * 65.00287 * 4 3 2 6 6 C 1.46898 * 110.99878 * 188.95408 * 5 4 3 7 7 N 1.36596 * 110.99882 * 64.99671 * 5 4 3 8 8 C 1.34775 * 120.00260 * 239.99814 * 7 5 4 9 9 O 1.21287 * 119.99798 * 0.02562 * 8 7 5 10 10 C 1.50705 * 120.00246 * 180.02562 * 8 7 5 11 11 C 1.50695 * 109.46992 * 180.02562 * 10 8 7 12 12 C 1.38299 * 119.93247 * 90.00201 * 11 10 8 13 13 C 1.38101 * 120.07425 * 179.97438 * 12 11 10 14 14 C 1.38886 * 119.92536 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.06440 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53777 * 15 14 13 17 17 H 1.07993 * 120.00518 * 354.94289 * 16 15 14 18 18 C 1.38663 * 119.99751 * 174.94575 * 16 15 14 19 19 N 1.31556 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47517 * 59.99414 * 20 18 16 22 22 H 1.48505 * 109.47332 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46989 * 299.99567 * 20 18 16 24 24 C 1.38874 * 119.86623 * 0.27854 * 14 13 12 25 25 C 1.38106 * 119.92542 * 359.44577 * 24 14 13 26 26 H 1.08997 * 109.47413 * 300.00220 * 1 2 3 27 27 H 1.09005 * 109.47225 * 59.99773 * 1 2 3 28 28 H 1.08998 * 109.47231 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46980 * 60.00181 * 3 2 1 30 30 H 1.08993 * 109.47415 * 300.00293 * 3 2 1 31 31 H 1.08997 * 109.47000 * 305.00079 * 4 3 2 32 32 H 1.09001 * 109.47028 * 185.00049 * 4 3 2 33 33 H 1.09005 * 109.47001 * 296.04473 * 6 5 4 34 34 H 1.09002 * 109.47230 * 56.04153 * 6 5 4 35 35 H 1.08995 * 109.46893 * 176.04594 * 6 5 4 36 36 H 0.97005 * 120.00135 * 60.00591 * 7 5 4 37 37 H 1.08998 * 109.46621 * 60.00483 * 10 8 7 38 38 H 1.08996 * 109.47266 * 300.00146 * 10 8 7 39 39 H 1.07999 * 119.96503 * 0.02562 * 12 11 10 40 40 H 1.07992 * 120.03608 * 180.02562 * 13 12 11 41 41 H 0.96996 * 120.00178 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.03745 * 179.72497 * 24 14 13 43 43 H 1.07997 * 119.96326 * 180.27708 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9779 0.5623 -1.2543 6 6 5.4092 0.2359 -1.2041 7 7 3.6957 1.3635 -2.3241 8 6 2.8893 0.9161 -3.3069 9 8 2.4138 -0.1977 -3.2414 10 6 2.5784 1.7998 -4.4875 11 6 1.6619 1.0690 -5.4344 12 6 0.2909 1.1751 -5.2876 13 6 -0.5517 0.5070 -6.1541 14 6 -0.0208 -0.2726 -7.1736 15 8 -0.8465 -0.9301 -8.0272 16 6 -2.1682 -0.6944 -7.9039 17 1 -2.5332 -0.0727 -7.0997 18 6 -3.0591 -1.2502 -8.8095 19 7 -2.6146 -2.0072 -9.7893 20 14 -4.8902 -0.9230 -8.6390 21 1 -5.1435 0.5370 -8.7366 22 1 -5.6218 -1.6254 -9.7238 23 1 -5.3613 -1.4200 -7.3213 24 6 1.3564 -0.3823 -7.3146 25 6 2.1936 0.2929 -6.4483 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8507 0.5685 0.8427 32 1 3.9785 2.1766 0.0902 33 1 5.9886 1.1550 -1.1149 34 1 5.6063 -0.4027 -0.3430 35 1 5.6950 -0.2865 -2.1169 36 1 4.0757 2.2545 -2.3764 37 1 3.5040 2.0566 -5.0027 38 1 2.0906 2.7108 -4.1409 39 1 -0.1214 1.7818 -4.4949 40 1 -1.6223 0.5907 -6.0391 41 1 -3.2378 -2.3963 -10.4226 42 1 1.7722 -0.9913 -8.1035 43 1 3.2647 0.2116 -6.5601 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288461595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:07 Heat of formation + Delta-G solvation = -67.700272 kcal Electronic energy + Delta-G solvation = -25208.545402 eV Core-core repulsion = 21448.345634 eV Total energy + Delta-G solvation = -3760.199768 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15151 -40.54685 -39.03274 -38.26800 -37.54229 -34.38423 -33.44064 -32.33911 -31.75141 -30.86980 -28.24256 -27.31684 -27.03779 -25.43373 -23.61733 -23.33076 -22.22344 -21.30335 -19.82775 -18.86490 -18.29029 -17.90722 -17.39137 -17.12601 -16.49733 -16.39123 -16.02913 -15.91226 -15.75521 -15.49226 -15.23376 -14.97085 -14.75650 -14.46350 -14.33402 -14.05177 -13.65936 -13.57630 -13.24070 -12.94528 -12.82154 -12.73340 -12.57185 -12.42320 -12.27304 -12.24302 -12.12331 -11.91911 -11.16691 -10.83287 -10.66775 -10.54709 -10.16129 -9.73817 -9.60943 -8.87830 -8.46142 -6.14456 0.63986 0.68640 1.34202 1.45390 1.51121 1.88792 1.90301 2.18795 2.84516 2.95327 3.18041 3.43282 3.53886 3.88622 4.07032 4.08821 4.16386 4.22150 4.31839 4.36501 4.48101 4.50039 4.51624 4.56045 4.56953 4.58333 4.63362 4.73255 4.82401 4.84925 4.88403 4.99169 5.11157 5.15836 5.32683 5.58626 5.73421 5.79955 5.83699 6.04088 6.24785 6.32207 6.45088 6.67802 6.98153 7.79322 7.80129 8.77311 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019013 B = 0.003053 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.335150 B = 9168.551057 C =10154.380775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.401 6.401 3 C 0.061 3.939 4 C 0.042 3.958 5 N -0.328 5.328 6 C 0.012 3.988 7 N -0.574 5.574 8 C 0.523 3.477 9 O -0.551 6.551 10 C -0.072 4.072 11 C -0.143 4.143 12 C -0.059 4.059 13 C -0.244 4.244 14 C 0.112 3.888 15 O -0.234 6.234 16 C -0.416 4.416 17 H 0.100 0.900 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.020 2.980 21 H -0.255 1.255 22 H -0.270 1.270 23 H -0.259 1.259 24 C -0.208 4.208 25 C -0.057 4.057 26 H 0.060 0.940 27 H 0.028 0.972 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.397 0.603 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.137 0.863 40 H 0.117 0.883 41 H 0.273 0.727 42 H 0.111 0.889 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.291 14.730 21.479 29.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.320 6.320 3 C -0.016 4.016 4 C -0.086 4.086 5 N -0.145 5.145 6 C -0.136 4.136 7 N -0.322 5.322 8 C 0.310 3.690 9 O -0.425 6.425 10 C -0.112 4.112 11 C -0.145 4.145 12 C -0.077 4.077 13 C -0.263 4.263 14 C 0.062 3.938 15 O -0.141 6.141 16 C -0.492 4.492 17 H 0.117 0.883 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.838 3.162 21 H -0.179 1.179 22 H -0.195 1.195 23 H -0.183 1.183 24 C -0.227 4.227 25 C -0.075 4.075 26 H 0.078 0.922 27 H 0.047 0.953 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.238 0.762 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.135 0.865 41 H 0.082 0.918 42 H 0.129 0.871 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.781 13.057 21.109 28.390 hybrid contribution -0.566 0.753 -0.222 0.968 sum 13.215 13.810 20.887 28.313 Atomic orbital electron populations 1.22725 0.80855 1.02779 0.99961 1.87968 1.20001 1.28677 1.95342 1.22656 0.93854 0.84741 1.00358 1.22715 0.93860 1.00430 0.91564 1.62771 1.18923 1.36116 0.96729 1.22851 0.85647 1.01508 1.03563 1.45266 1.51368 1.16563 1.19033 1.21162 0.77162 0.87650 0.83003 1.90768 1.51028 1.22695 1.78050 1.20486 1.01447 0.97680 0.91631 1.19220 0.93336 1.03283 0.98626 1.20900 0.93102 0.97064 0.96601 1.21212 1.00565 1.04972 0.99574 1.19934 0.91628 0.91703 0.90493 1.83936 1.18288 1.59755 1.52141 1.21795 0.79270 1.33351 1.14748 0.88257 1.26622 1.05762 0.95556 0.94163 1.70184 1.37628 1.32413 1.15854 0.84645 0.73301 0.79417 0.78805 1.17888 1.19470 1.18339 1.20439 0.90272 1.07322 1.04645 1.20874 0.99414 0.94049 0.93129 0.92152 0.95318 0.90293 0.90842 0.94387 0.88101 0.89337 0.92353 0.89267 0.92257 0.76177 0.84988 0.85371 0.84565 0.86544 0.91827 0.87099 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -10.73 10.65 -148.98 -1.59 -12.31 16 3 C 0.06 1.09 6.09 71.98 0.44 1.53 16 4 C 0.04 0.57 5.57 86.30 0.48 1.05 16 5 N -0.33 -6.29 4.52 -537.15 -2.43 -8.72 16 6 C 0.01 0.16 9.98 127.69 1.27 1.44 16 7 N -0.57 -9.75 4.02 -173.52 -0.70 -10.45 16 8 C 0.52 13.24 7.80 87.66 0.68 13.93 16 9 O -0.55 -21.43 16.36 -3.05 -0.05 -21.48 16 10 C -0.07 -1.42 5.83 29.10 0.17 -1.25 16 11 C -0.14 -4.65 4.38 -19.84 -0.09 -4.73 16 12 C -0.06 -2.16 9.69 22.25 0.22 -1.94 16 13 C -0.24 -11.41 9.17 22.39 0.21 -11.21 16 14 C 0.11 6.01 6.65 22.58 0.15 6.16 16 15 O -0.23 -14.91 9.76 -22.72 -0.22 -15.13 16 16 C -0.42 -25.36 9.49 67.92 0.64 -24.71 16 17 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16 18 C -0.02 -1.41 5.49 84.84 0.47 -0.94 16 19 N -0.92 -58.58 13.67 21.62 0.30 -58.29 16 20 Si 1.02 44.30 29.55 68.60 2.03 46.33 16 21 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 24 C -0.21 -9.57 9.99 22.39 0.22 -9.34 16 25 C -0.06 -2.04 9.69 22.25 0.22 -1.83 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.04 0.74 7.48 -2.39 -0.02 0.72 16 31 H 0.10 1.27 8.03 -2.39 -0.02 1.25 16 32 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.09 1.06 8.06 -2.39 -0.02 1.04 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.40 3.31 8.83 -215.49 -1.90 1.41 16 37 H 0.13 1.70 8.08 -2.39 -0.02 1.68 16 38 H 0.13 1.69 8.08 -2.39 -0.02 1.68 16 39 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.12 5.51 5.64 -2.91 -0.02 5.50 16 41 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 42 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 43 H 0.15 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -89.27 369.57 2.78 -86.49 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.89 Total: 23.40 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 6.33 Total: -29.86 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -2.83 Total: -77.45 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -1.86 Total: -48.92 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -89.27 2.78 -86.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288461595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.791 kcal (2) G-P(sol) polarization free energy of solvation -89.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds