Wall clock time and date at job start Fri Apr 10 2020 22:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33226 * 126.01671 * 2 1 4 4 C 1.31536 * 109.75889 * 180.02562 * 3 2 1 5 5 O 1.35207 * 125.48759 * 180.02562 * 4 3 2 6 6 N 1.34943 * 109.01746 * 359.72105 * 4 3 2 7 7 H 0.96996 * 126.54926 * 180.31385 * 6 4 3 8 8 C 1.36721 * 126.01739 * 180.02562 * 2 1 3 9 9 C 1.46377 * 126.82767 * 359.97438 * 8 2 1 10 10 O 1.21732 * 119.99632 * 359.97438 * 9 8 2 11 11 N 1.34771 * 119.99621 * 179.97438 * 9 8 2 12 12 C 1.46501 * 119.99755 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.49875 * 324.93037 * 12 11 9 14 14 C 1.53037 * 109.47109 * 204.85312 * 12 11 9 15 15 C 1.53038 * 109.53858 * 301.36023 * 14 12 11 16 16 C 1.53193 * 109.34333 * 298.68367 * 15 14 12 17 17 H 1.09000 * 109.58482 * 294.69495 * 16 15 14 18 18 C 1.52992 * 109.58959 * 174.40291 * 16 15 14 19 19 N 1.46925 * 108.77321 * 54.61702 * 16 15 14 20 20 C 1.36932 * 120.63255 * 126.41310 * 19 16 15 21 21 H 1.08008 * 119.99785 * 330.18258 * 20 19 16 22 22 C 1.38809 * 120.00284 * 150.17940 * 20 19 16 23 23 N 1.31614 * 120.00019 * 344.48789 * 22 20 19 24 24 Si 1.86801 * 119.99981 * 164.48273 * 22 20 19 25 25 H 1.48507 * 109.47078 * 60.00464 * 24 22 20 26 26 H 1.48502 * 109.47284 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47508 * 300.00269 * 24 22 20 28 28 C 1.46927 * 118.74074 * 306.39460 * 19 16 15 29 29 H 1.08997 * 109.47021 * 269.97741 * 1 2 3 30 30 H 1.08995 * 109.47068 * 29.98026 * 1 2 3 31 31 H 1.09004 * 109.46638 * 149.97875 * 1 2 3 32 32 H 0.96690 * 114.00247 * 89.96923 * 5 4 3 33 33 H 0.96999 * 120.00526 * 359.97438 * 11 9 8 34 34 H 1.09011 * 109.43450 * 181.35788 * 14 12 11 35 35 H 1.09003 * 109.48861 * 61.40189 * 14 12 11 36 36 H 1.09008 * 109.49594 * 178.71381 * 15 14 12 37 37 H 1.09003 * 109.49471 * 58.65545 * 15 14 12 38 38 H 1.09003 * 109.46785 * 60.00182 * 18 16 15 39 39 H 1.08994 * 109.47240 * 180.02562 * 18 16 15 40 40 H 1.09000 * 109.47431 * 300.00732 * 18 16 15 41 41 H 0.97007 * 120.00275 * 180.02562 * 23 22 20 42 42 H 1.09001 * 109.58869 * 173.39262 * 28 19 16 43 43 H 1.09001 * 109.58680 * 293.82228 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2905 1.0776 0.0000 4 6 3.5532 0.7093 -0.0006 5 8 4.6150 1.5465 -0.0002 6 7 3.6182 -0.6385 0.0053 7 1 4.4243 -1.1779 0.0105 8 6 2.3110 -1.1059 -0.0005 9 6 1.8793 -2.5045 -0.0006 10 8 0.6924 -2.7751 0.0003 11 7 2.7958 -3.4926 -0.0016 12 6 2.3637 -4.8924 -0.0012 13 1 1.4535 -4.9920 0.5902 14 6 3.4649 -5.7660 0.6040 15 6 4.7523 -5.6016 -0.2070 16 6 4.5067 -6.0611 -1.6476 17 1 4.2985 -7.1310 -1.6594 18 6 5.7454 -5.7701 -2.4971 19 7 3.3549 -5.3264 -2.1883 20 6 3.4574 -4.6388 -3.3681 21 1 4.4061 -4.2180 -3.6672 22 6 2.3421 -4.4827 -4.1796 23 7 1.2781 -5.2332 -3.9874 24 14 2.3512 -3.2072 -5.5443 25 1 3.4488 -3.5102 -6.4976 26 1 1.0505 -3.2389 -6.2602 27 1 2.5613 -1.8584 -4.9599 28 6 2.0910 -5.3439 -1.4394 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 4.9237 1.7898 0.8832 33 1 3.7415 -3.2770 -0.0027 34 1 3.1528 -6.8102 0.5820 35 1 3.6442 -5.4625 1.6355 36 1 5.5424 -6.2064 0.2382 37 1 5.0519 -4.5535 -0.2054 38 1 6.6013 -6.3060 -2.0868 39 1 5.5684 -6.0973 -3.5216 40 1 5.9489 -4.6993 -2.4880 41 1 0.4988 -5.1244 -4.5547 42 1 1.3796 -4.6633 -1.9073 43 1 1.6834 -6.3548 -1.4340 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071587860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:07:21 Heat of formation + Delta-G solvation = 3.388274 kcal Electronic energy + Delta-G solvation = -27048.825818 eV Core-core repulsion = 23324.001432 eV Total energy + Delta-G solvation = -3724.824386 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.19001 -39.39172 -37.78601 -37.25578 -34.35284 -33.26337 -32.71415 -31.03992 -30.30831 -29.90918 -27.06782 -26.10507 -24.99550 -22.97483 -22.24301 -21.59099 -20.47538 -19.91658 -19.35270 -18.80646 -17.81192 -16.42324 -16.29147 -15.80729 -15.29271 -14.89787 -14.67834 -14.09686 -14.05454 -13.67114 -13.58671 -13.23238 -13.08251 -12.84315 -12.54670 -12.52175 -12.34630 -11.99790 -11.87490 -11.30509 -11.22662 -11.00882 -10.96183 -10.71850 -10.44561 -10.40065 -10.27807 -10.03823 -10.01254 -9.65149 -9.53961 -9.44574 -8.59059 -8.47369 -8.22562 -6.63478 -5.78081 -3.23008 1.29859 2.39288 2.73236 3.37753 3.44965 3.46712 3.48656 3.71857 3.82887 4.48353 4.82378 5.06929 5.23677 5.24962 5.29701 5.39964 5.43247 5.52666 5.62757 5.92211 5.94599 6.01357 6.04528 6.08846 6.16814 6.24293 6.27789 6.35963 6.42973 6.51029 6.52852 6.59866 6.68029 6.80121 6.98379 7.03912 7.30965 7.47753 7.63356 7.76654 7.80708 7.97803 8.45987 8.60118 9.20439 9.84570 10.40568 11.29865 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011366 B = 0.005988 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.883244 B = 4675.179024 C = 5329.301544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.103 3.897 3 N -0.489 5.489 4 C 0.400 3.600 5 O -0.441 6.441 6 N -0.552 5.552 7 H 0.421 0.579 8 C -0.065 4.065 9 C 0.594 3.406 10 O -0.525 6.525 11 N -0.697 5.697 12 C 0.119 3.881 13 H 0.080 0.920 14 C -0.119 4.119 15 C -0.130 4.130 16 C 0.164 3.836 17 H 0.026 0.974 18 C -0.135 4.135 19 N -0.581 5.581 20 C -0.256 4.256 21 H 0.066 0.934 22 C 0.010 3.990 23 N -0.897 5.897 24 Si 0.895 3.105 25 H -0.284 1.284 26 H -0.289 1.289 27 H -0.285 1.285 28 C 0.162 3.838 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.402 0.598 33 H 0.388 0.612 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.037 0.963 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.255 0.745 42 H 0.097 0.903 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.889 5.423 12.517 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.031 4.031 3 N -0.220 5.220 4 C 0.099 3.901 5 O -0.241 6.241 6 N -0.170 5.170 7 H 0.260 0.740 8 C -0.180 4.180 9 C 0.379 3.621 10 O -0.401 6.401 11 N -0.347 5.347 12 C 0.014 3.986 13 H 0.098 0.902 14 C -0.157 4.157 15 C -0.169 4.169 16 C 0.058 3.942 17 H 0.043 0.957 18 C -0.193 4.193 19 N -0.305 5.305 20 C -0.385 4.385 21 H 0.083 0.917 22 C -0.189 4.189 23 N -0.540 5.540 24 Si 0.725 3.275 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.212 1.212 28 C 0.035 3.965 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.259 0.741 33 H 0.222 0.778 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.115 0.885 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.625 6.023 11.790 14.385 hybrid contribution 1.577 -0.153 -0.386 1.631 sum 7.202 5.870 11.404 14.710 Atomic orbital electron populations 1.20324 0.86021 1.04103 1.02960 1.20893 0.96857 0.85895 0.99497 1.70221 0.98568 1.30538 1.22706 1.20110 0.87349 0.78709 1.03954 1.84863 1.43479 1.61732 1.34075 1.43684 1.08944 1.07790 1.56628 0.73976 1.21068 0.82634 0.95810 1.18483 1.16554 0.86173 0.82189 0.77146 1.90818 1.15807 1.82621 1.50893 1.45749 1.08530 1.06547 1.73844 1.21847 0.96642 0.78887 1.01256 0.90229 1.21700 0.95953 1.00232 0.97821 1.22066 0.96216 1.00315 0.98309 1.20464 0.89049 0.94336 0.90392 0.95668 1.21787 0.95918 1.00721 1.00829 1.44018 1.07034 1.56943 1.22490 1.18982 0.96242 1.26967 0.96342 0.91678 1.25049 0.97855 0.98555 0.97474 1.69965 1.05304 1.38292 1.40431 0.86503 0.76916 0.82021 0.82094 1.20986 1.21502 1.21155 1.21192 0.89438 0.99422 0.86461 0.90737 0.91122 0.88653 0.74078 0.77801 0.90868 0.93040 0.92791 0.93153 0.94443 0.91986 0.93131 0.93506 0.88531 0.95473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 9.87 36.01 0.36 -0.79 16 2 C 0.10 1.72 7.14 -82.53 -0.59 1.13 16 3 N -0.49 -7.95 11.22 -10.83 -0.12 -8.08 16 4 C 0.40 5.51 9.43 -89.60 -0.84 4.66 16 5 O -0.44 -4.59 13.62 -17.32 -0.24 -4.83 16 6 N -0.55 -7.30 6.12 -10.90 -0.07 -7.36 16 7 H 0.42 4.32 8.32 -40.82 -0.34 3.98 16 8 C -0.06 -1.07 7.08 -81.97 -0.58 -1.65 16 9 C 0.59 10.95 7.74 -12.99 -0.10 10.85 16 10 O -0.52 -11.10 14.46 5.16 0.07 -11.03 16 11 N -0.70 -11.72 4.91 -55.09 -0.27 -11.99 16 12 C 0.12 2.13 2.81 -67.81 -0.19 1.94 16 13 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 14 C -0.12 -1.74 5.59 -26.69 -0.15 -1.89 16 15 C -0.13 -1.92 5.20 -26.61 -0.14 -2.05 16 16 C 0.16 3.09 3.50 -67.60 -0.24 2.85 16 17 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 18 C -0.14 -2.35 7.95 37.15 0.30 -2.06 16 19 N -0.58 -13.31 2.90 -164.78 -0.48 -13.78 16 20 C -0.26 -6.62 8.58 -15.06 -0.13 -6.75 16 21 H 0.07 1.66 6.23 -52.48 -0.33 1.33 16 22 C 0.01 0.28 4.94 -17.43 -0.09 0.20 16 23 N -0.90 -25.97 11.23 55.49 0.62 -25.35 16 24 Si 0.89 22.19 29.58 -169.99 -5.03 17.16 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 C 0.16 3.69 4.88 -3.71 -0.02 3.68 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 1.60 6.46 -51.93 -0.34 1.26 16 32 H 0.40 1.78 9.06 45.56 0.41 2.20 16 33 H 0.39 5.70 6.01 -40.82 -0.25 5.45 16 34 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.05 0.72 6.41 -51.93 -0.33 0.38 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 1.20 7.66 -51.93 -0.40 0.81 16 40 H 0.05 0.88 7.40 -51.93 -0.38 0.50 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.10 2.63 6.15 -51.93 -0.32 2.31 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -33.31 344.80 -7.90 -41.21 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.18 Total: 8.72 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -2.41 Total: 10.13 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: -0.31 Total: -66.56 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.16 Total: -15.86 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.31 -7.90 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071587860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.597 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds