Wall clock time and date at job start Fri Apr 10 2020 22:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00321 * 2 1 4 4 H 1.48499 * 109.46746 * 267.32548 * 3 2 1 5 5 H 1.48502 * 109.46833 * 27.32365 * 3 2 1 6 6 H 1.48493 * 109.47430 * 147.32242 * 3 2 1 7 7 C 1.37879 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99366 * 353.51697 * 7 2 1 9 9 C 1.50694 * 120.00527 * 173.51987 * 7 2 1 10 10 O 1.42905 * 110.88372 * 328.70039 * 9 7 2 11 11 C 1.55154 * 111.03914 * 92.60529 * 9 7 2 12 12 C 1.54343 * 103.02062 * 153.39737 * 11 9 7 13 13 N 1.47020 * 107.26163 * 338.14315 * 12 11 9 14 14 C 1.34781 * 125.64222 * 178.84724 * 13 12 11 15 15 O 1.21588 * 119.99815 * 179.69009 * 14 13 12 16 16 N 1.34770 * 120.00201 * 359.69510 * 14 13 12 17 17 C 1.46510 * 120.00019 * 179.97438 * 16 14 13 18 18 C 1.52993 * 109.46906 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47065 * 179.97438 * 18 17 16 20 20 N 1.46501 * 109.47260 * 179.97438 * 19 18 17 21 21 C 1.36884 * 126.39742 * 269.71431 * 20 19 18 22 22 C 1.34669 * 106.81511 * 179.84286 * 21 20 19 23 23 N 1.34126 * 108.02103 * 0.42601 * 22 21 20 24 24 C 1.30500 * 109.25395 * 359.72723 * 23 22 21 25 25 C 1.47420 * 108.70899 * 358.58592 * 13 12 11 26 26 H 0.96997 * 120.00267 * 359.97438 * 1 2 3 27 27 H 0.96691 * 114.00421 * 292.32461 * 10 9 7 28 28 H 1.08998 * 110.72176 * 271.95658 * 11 9 7 29 29 H 1.09003 * 110.72024 * 35.23281 * 11 9 7 30 30 H 1.08999 * 109.98876 * 218.66880 * 12 11 9 31 31 H 1.08995 * 109.77770 * 97.49943 * 12 11 9 32 32 H 0.96994 * 120.00266 * 359.97438 * 16 14 13 33 33 H 1.08996 * 109.46723 * 59.99952 * 17 16 14 34 34 H 1.08996 * 109.46628 * 300.00015 * 17 16 14 35 35 H 1.08999 * 109.47313 * 59.99953 * 18 17 16 36 36 H 1.09003 * 109.47529 * 299.99960 * 18 17 16 37 37 H 1.09007 * 109.47053 * 60.00190 * 19 18 17 38 38 H 1.08996 * 109.47317 * 300.00583 * 19 18 17 39 39 H 1.08005 * 126.58885 * 359.97438 * 21 20 19 40 40 H 1.07999 * 125.98858 * 180.11529 * 22 21 20 41 41 H 1.08009 * 125.64778 * 180.02562 * 24 23 22 42 42 H 1.09001 * 110.37197 * 143.19376 * 25 13 12 43 43 H 1.09004 * 110.36816 * 265.41167 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5532 2.0136 -1.3986 5 1 1.4194 2.6683 0.6427 6 1 3.5172 1.4572 0.7559 7 6 2.0045 -1.1940 -0.0005 8 1 1.4696 -2.1264 0.1047 9 6 3.5042 -1.1982 -0.1478 10 8 3.9403 -0.0994 -0.9507 11 6 4.2001 -1.1845 1.2388 12 6 5.5566 -1.8633 0.9539 13 7 5.3950 -2.6654 -0.2676 14 6 6.3601 -3.3953 -0.8614 15 8 6.1108 -4.0270 -1.8699 16 7 7.6013 -3.4250 -0.3371 17 6 8.6501 -4.2189 -0.9823 18 6 9.9532 -4.0802 -0.1926 19 6 11.0484 -4.9097 -0.8659 20 7 12.2962 -4.7764 -0.1100 21 6 13.2707 -3.8362 -0.3104 22 6 14.2341 -4.0735 0.6002 23 7 13.8625 -5.1355 1.3303 24 6 12.7027 -5.5617 0.9105 25 6 4.0011 -2.5442 -0.7319 26 1 -0.4850 0.8400 0.0004 27 1 3.6749 -0.1605 -1.8785 28 1 4.3438 -0.1621 1.5882 29 1 3.6278 -1.7639 1.9633 30 1 5.8326 -2.5090 1.7875 31 1 6.3238 -1.1044 0.8003 32 1 7.8002 -2.9209 0.4672 33 1 8.8027 -3.8605 -2.0002 34 1 8.3496 -5.2663 -1.0070 35 1 9.8008 -4.4382 0.8256 36 1 10.2535 -3.0326 -0.1681 37 1 11.2008 -4.5520 -1.8842 38 1 10.7478 -5.9571 -0.8900 39 1 13.2666 -3.0532 -1.0543 40 1 15.1482 -3.5107 0.7183 41 1 12.1579 -6.4031 1.3129 42 1 3.9646 -2.5216 -1.8211 43 1 3.4008 -3.3700 -0.3499 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118120828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:06:07 Heat of formation + Delta-G solvation = -8.831827 kcal Electronic energy + Delta-G solvation = -24891.195265 eV Core-core repulsion = 21165.840975 eV Total energy + Delta-G solvation = -3725.354289 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.35815 -40.03377 -38.01265 -36.40097 -34.78879 -34.24608 -32.41469 -31.36301 -30.13859 -29.69409 -28.39765 -26.36803 -24.85884 -22.78439 -22.33494 -21.67311 -21.23491 -19.94802 -19.78256 -18.02430 -17.77456 -17.44023 -16.24659 -15.93245 -15.56224 -15.43625 -15.10403 -14.87111 -14.53259 -14.41205 -14.10625 -13.81042 -13.65960 -13.53865 -12.96301 -12.84678 -12.71819 -12.46552 -12.16155 -11.97853 -11.73436 -11.61950 -11.48362 -11.08411 -10.55166 -10.43526 -10.31371 -10.25936 -10.07335 -9.89979 -9.28162 -9.16658 -8.86718 -8.72079 -8.57286 -8.08626 -6.23115 -4.35493 1.69530 2.32577 2.81803 2.86998 3.39913 3.42144 3.48795 3.65056 4.05870 4.08241 4.33477 4.39626 4.45523 4.46932 4.61219 4.76156 4.81338 4.97201 5.08393 5.11382 5.19666 5.28030 5.34399 5.49127 5.53022 5.58020 5.71958 5.80720 5.90179 6.02669 6.38751 6.41188 6.43167 6.46723 6.58494 6.66636 6.81095 6.99495 7.21642 7.42810 7.74127 8.08147 8.16720 8.57407 8.76910 8.77539 9.38065 10.85657 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.031279 B = 0.002368 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.956060 B =11823.401837 C =12205.248273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.074 3.926 3 Si 0.952 3.048 4 H -0.293 1.293 5 H -0.326 1.326 6 H -0.270 1.270 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.220 3.780 10 O -0.559 6.559 11 C -0.120 4.120 12 C 0.101 3.899 13 N -0.628 5.628 14 C 0.719 3.281 15 O -0.598 6.598 16 N -0.751 5.751 17 C 0.144 3.856 18 C -0.148 4.148 19 C 0.108 3.892 20 N -0.458 5.458 21 C -0.056 4.056 22 C -0.032 4.032 23 N -0.498 5.498 24 C 0.181 3.819 25 C 0.108 3.892 26 H 0.267 0.733 27 H 0.371 0.629 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.396 0.604 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.204 0.796 42 H 0.070 0.930 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.447 -7.102 0.253 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.131 4.131 3 Si 0.788 3.212 4 H -0.221 1.221 5 H -0.258 1.258 6 H -0.196 1.196 7 C -0.590 4.590 8 H 0.100 0.900 9 C 0.179 3.821 10 O -0.367 6.367 11 C -0.158 4.158 12 C -0.022 4.022 13 N -0.364 5.364 14 C 0.421 3.579 15 O -0.477 6.477 16 N -0.408 5.408 17 C 0.019 3.981 18 C -0.186 4.186 19 C -0.015 4.015 20 N -0.141 5.141 21 C -0.189 4.189 22 C -0.180 4.180 23 N -0.216 5.216 24 C -0.101 4.101 25 C -0.015 4.015 26 H 0.076 0.924 27 H 0.220 0.780 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.230 0.770 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.191 0.809 40 H 0.186 0.814 41 H 0.220 0.780 42 H 0.088 0.912 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.721 -7.718 0.586 24.003 hybrid contribution -0.272 1.298 -0.750 1.524 sum 22.449 -6.420 -0.164 23.349 Atomic orbital electron populations 1.69961 1.06847 1.27861 1.47469 1.25119 0.94887 1.00538 0.92549 0.85632 0.77745 0.79945 0.77907 1.22084 1.25791 1.19633 1.21095 0.88352 0.95493 1.54057 0.90029 1.20250 0.93708 0.81117 0.87022 1.86105 1.80084 1.46571 1.23961 1.22957 0.92800 1.00901 0.99161 1.22064 1.00253 0.93695 0.86225 1.47720 1.11137 1.49069 1.28495 1.15427 0.79749 0.79977 0.82721 1.90896 1.81455 1.49013 1.26322 1.45019 1.09328 1.54309 1.32113 1.20940 0.84800 0.96182 0.96181 1.22159 0.94025 1.01696 1.00739 1.21795 0.81359 1.02604 0.95730 1.45601 1.16577 1.24487 1.27438 1.22787 0.91711 0.98585 1.05773 1.22329 1.00958 0.98242 0.96471 1.70305 1.11470 1.12450 1.27329 1.25049 0.94553 0.99564 0.90963 1.23009 0.78382 1.00310 0.99768 0.92364 0.78042 0.90144 0.89578 0.92724 0.92501 0.77050 0.91418 0.91339 0.90289 0.90343 0.88435 0.88190 0.80926 0.81432 0.77958 0.91175 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.96 55.43 0.77 -24.99 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.92 16 3 Si 0.95 22.81 24.93 -169.99 -4.24 18.57 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.33 -8.07 7.11 56.52 0.40 -7.66 16 6 H -0.27 -6.29 5.42 56.52 0.31 -5.98 16 7 C -0.55 -14.20 8.89 -34.44 -0.31 -14.50 16 8 H 0.08 2.28 8.00 -52.48 -0.42 1.86 16 9 C 0.22 4.66 0.70 -89.63 -0.06 4.60 16 10 O -0.56 -11.81 8.52 -35.23 -0.30 -12.11 16 11 C -0.12 -2.22 5.90 -24.89 -0.15 -2.37 16 12 C 0.10 1.53 6.15 -3.05 -0.02 1.51 16 13 N -0.63 -10.86 3.33 -176.23 -0.59 -11.44 16 14 C 0.72 12.13 8.49 -86.92 -0.74 11.39 16 15 O -0.60 -12.20 16.60 5.29 0.09 -12.11 16 16 N -0.75 -8.85 5.52 -65.22 -0.36 -9.21 16 17 C 0.14 1.25 5.67 -4.04 -0.02 1.23 16 18 C -0.15 -0.83 5.65 -26.73 -0.15 -0.98 16 19 C 0.11 0.49 6.15 -4.04 -0.02 0.46 16 20 N -0.46 -3.13 2.75 -118.57 -0.33 -3.46 16 21 C -0.06 -0.41 11.58 -16.56 -0.19 -0.60 16 22 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 23 N -0.50 -5.37 11.25 -14.67 -0.17 -5.54 16 24 C 0.18 1.47 12.56 -90.38 -1.14 0.33 16 25 C 0.11 2.13 6.07 -2.53 -0.02 2.11 16 26 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.37 7.06 8.98 45.56 0.41 7.47 16 28 H 0.08 1.53 6.65 -51.93 -0.35 1.18 16 29 H 0.09 1.56 8.03 -51.93 -0.42 1.15 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.40 3.89 7.46 -40.82 -0.30 3.59 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.20 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.07 1.42 8.02 -51.93 -0.42 1.00 16 43 H 0.07 1.42 7.99 -51.93 -0.41 1.01 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -34.93 354.38 -8.69 -43.61 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.79 Total: 6.72 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -3.12 Total: 4.61 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.66 Total: -54.63 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.21 Total: -24.22 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.24 Total: 18.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.93 -8.69 -43.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118120828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.782 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds