Wall clock time and date at job start Fri Apr 10 2020 22:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86790 * 120.00163 * 2 1 4 4 H 1.48501 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47001 * 300.00307 * 3 2 1 6 6 H 1.48500 * 109.47147 * 60.00105 * 3 2 1 7 7 C 1.38816 * 119.99652 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99463 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99648 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47089 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47252 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.47027 * 180.02562 * 12 11 10 14 14 C 1.34781 * 120.00029 * 180.02562 * 13 12 11 15 15 O 1.21606 * 119.99687 * 359.97438 * 14 13 12 16 16 C 1.47429 * 120.00533 * 180.02562 * 14 13 12 17 17 C 1.38048 * 126.40981 * 0.02562 * 16 14 13 18 18 N 1.34260 * 107.41620 * 179.97438 * 17 16 14 19 19 H 0.97003 * 125.75401 * 180.02562 * 18 17 16 20 20 N 1.39933 * 108.48834 * 359.79163 * 18 17 16 21 21 C 1.30447 * 108.90289 * 0.36088 * 20 18 17 22 22 C 1.50693 * 125.99283 * 179.90654 * 21 20 18 23 23 H 1.09006 * 110.99101 * 182.43660 * 22 21 20 24 24 C 1.55457 * 111.14641 * 306.61200 * 22 21 20 25 25 C 1.54382 * 102.18540 * 151.99221 * 24 22 21 26 26 O 1.43233 * 107.66464 * 338.74226 * 25 24 22 27 27 C 1.43650 * 109.97542 * 358.24175 * 26 25 24 28 28 H 0.97003 * 119.99989 * 359.97438 * 1 2 3 29 29 H 0.96992 * 120.00231 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47266 * 60.00071 * 10 9 7 31 31 H 1.08998 * 109.47214 * 300.00006 * 10 9 7 32 32 H 1.09001 * 109.47019 * 59.99907 * 11 10 9 33 33 H 1.08999 * 109.47346 * 300.00552 * 11 10 9 34 34 H 1.09001 * 109.47066 * 60.00081 * 12 11 10 35 35 H 1.08999 * 109.47514 * 300.00594 * 12 11 10 36 36 H 0.96998 * 120.00216 * 0.02562 * 13 12 11 37 37 H 1.08000 * 126.28905 * 0.02562 * 17 16 14 38 38 H 1.08994 * 110.83103 * 33.84286 * 24 22 21 39 39 H 1.08999 * 110.92148 * 270.18164 * 24 22 21 40 40 H 1.09002 * 109.83024 * 219.18066 * 25 24 22 41 41 H 1.08996 * 109.83002 * 98.29659 * 25 24 22 42 42 H 1.08996 * 110.30866 * 143.34644 * 27 26 25 43 43 H 1.08998 * 110.30791 * 265.41708 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8198 -0.0012 12 6 1.8287 -6.1448 -0.0018 13 7 0.8767 -7.2582 -0.0031 14 6 1.3259 -8.5290 -0.0033 15 8 2.5214 -8.7512 -0.0029 16 6 0.3679 -9.6496 -0.0051 17 6 -1.0090 -9.5505 -0.0072 18 7 -1.5018 -10.7994 -0.0089 19 1 -2.4421 -11.0377 -0.0109 20 7 -0.4302 -11.6992 -0.0127 21 6 0.6870 -11.0259 -0.0056 22 6 2.0749 -11.6131 -0.0045 23 1 2.8305 -10.8290 0.0454 24 6 2.2509 -12.6344 1.1542 25 6 3.3247 -13.5880 0.5878 26 8 3.3156 -13.4548 -0.8383 27 6 2.2965 -12.5246 -1.2378 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6847 -3.7146 0.8895 31 1 2.6847 -3.7146 -0.8905 32 1 0.4374 -4.7618 -0.8914 33 1 0.4367 -4.7622 0.8885 34 1 2.4553 -6.2030 0.8882 35 1 2.4555 -6.2021 -0.8917 36 1 -0.0770 -7.0810 -0.0037 37 1 -1.5841 -8.6363 -0.0082 38 1 1.3199 -13.1681 1.3452 39 1 2.6085 -12.1403 2.0576 40 1 3.0897 -14.6157 0.8647 41 1 4.3049 -13.3148 0.9784 42 1 2.6359 -11.9340 -2.0887 43 1 1.3777 -13.0546 -1.4884 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163387339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:07:10 Heat of formation + Delta-G solvation = -6.948117 kcal Electronic energy + Delta-G solvation = -24325.371452 eV Core-core repulsion = 20600.098847 eV Total energy + Delta-G solvation = -3725.272605 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.91225 -39.40757 -39.24210 -36.04284 -34.44112 -33.79117 -32.18376 -31.04890 -30.80942 -29.34655 -29.14249 -25.43544 -23.77877 -23.40440 -22.51801 -22.19680 -21.22017 -20.23789 -19.83475 -18.78480 -17.10688 -16.76779 -16.52139 -16.23914 -15.79350 -15.78400 -15.21313 -15.04962 -14.62449 -14.13269 -14.06229 -13.78320 -13.73751 -13.51994 -13.28871 -13.01281 -12.42770 -12.16370 -11.91221 -11.73962 -11.67832 -11.41496 -11.12214 -10.96406 -10.94985 -10.77966 -10.64748 -10.07662 -9.92295 -9.89547 -9.75138 -9.68929 -9.30813 -8.97465 -8.90364 -6.95618 -5.79700 -3.08417 1.10926 1.72397 2.23184 3.16591 3.26587 3.42199 3.48223 3.50358 3.58811 4.03924 4.16761 4.34913 4.53935 4.57461 4.72751 4.84013 4.93026 5.01092 5.03676 5.16897 5.23515 5.29677 5.43218 5.51988 5.55616 5.57075 5.60897 5.67505 5.87561 5.95162 6.05031 6.07273 6.17142 6.29979 6.44594 6.64201 6.71375 6.77016 6.81256 7.07262 7.48019 7.69045 8.19773 8.39442 9.50700 10.07666 10.42193 11.43410 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.028075 B = 0.002077 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.076397 B =13480.750581 C =14240.273228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.124 3.876 13 N -0.725 5.725 14 C 0.591 3.409 15 O -0.541 6.541 16 C -0.281 4.281 17 C 0.107 3.893 18 N -0.458 5.458 19 H 0.446 0.554 20 N -0.293 5.293 21 C 0.146 3.854 22 C -0.057 4.057 23 H 0.135 0.865 24 C -0.145 4.145 25 C 0.052 3.948 26 O -0.382 6.382 27 C 0.065 3.935 28 H 0.254 0.746 29 H 0.383 0.617 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.397 0.603 37 H 0.189 0.811 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.723 -27.301 1.076 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C 0.000 4.000 13 N -0.375 5.375 14 C 0.378 3.622 15 O -0.420 6.420 16 C -0.296 4.296 17 C -0.046 4.046 18 N -0.163 5.163 19 H 0.291 0.709 20 N -0.115 5.115 21 C -0.023 4.023 22 C -0.077 4.077 23 H 0.152 0.848 24 C -0.183 4.183 25 C -0.024 4.024 26 O -0.301 6.301 27 C -0.012 4.012 28 H 0.064 0.936 29 H 0.217 0.783 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.230 0.770 37 H 0.206 0.794 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.093 -28.590 0.933 28.772 hybrid contribution -0.978 2.023 0.210 2.256 sum -4.071 -26.567 1.143 26.901 Atomic orbital electron populations 1.69670 1.05136 1.25562 1.58007 1.24761 0.95579 0.97795 1.03051 0.86089 0.78835 0.83949 0.77176 1.20479 1.21854 1.21854 1.19297 0.91157 0.84097 1.42404 0.91004 1.42346 1.05856 1.00028 1.89611 1.20527 0.93280 0.85144 0.98280 1.21945 0.99600 0.93403 1.02634 1.21365 0.91654 0.84296 1.02646 1.45898 1.10462 1.05553 1.75614 1.17210 0.87360 0.81751 0.75922 1.90719 1.16005 1.84364 1.50882 1.20330 0.92379 0.94409 1.22490 1.23224 0.94428 0.90338 0.96584 1.46104 1.09444 1.03852 1.56889 0.70934 1.77118 0.93311 1.15245 1.25789 1.21890 0.94182 0.90427 0.95756 1.21712 0.91197 0.98994 0.95816 0.84759 1.23217 1.00126 0.96379 0.98611 1.23116 0.99044 0.99132 0.81113 1.88404 1.56313 1.64008 1.21414 1.23393 0.91715 0.89624 0.96469 0.93576 0.78338 0.95993 0.95988 0.91332 0.91340 0.91206 0.91185 0.76964 0.79387 0.90027 0.89544 0.91359 0.90932 0.89270 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.35 5.60 -59.91 -0.34 -18.68 16 10 C 0.16 3.02 6.26 -4.04 -0.03 3.00 16 11 C -0.14 -1.98 5.44 -26.73 -0.15 -2.13 16 12 C 0.12 1.59 5.67 -4.05 -0.02 1.56 16 13 N -0.72 -7.69 5.54 -61.39 -0.34 -8.03 16 14 C 0.59 7.24 7.81 -12.52 -0.10 7.14 16 15 O -0.54 -8.42 14.61 5.27 0.08 -8.34 16 16 C -0.28 -2.81 6.13 -105.07 -0.64 -3.46 16 17 C 0.11 0.67 11.52 -16.56 -0.19 0.48 16 18 N -0.46 -2.82 7.29 30.85 0.22 -2.59 16 19 H 0.45 1.15 8.96 -182.72 -1.64 -0.49 16 20 N -0.29 -2.79 12.31 33.89 0.42 -2.37 16 21 C 0.15 1.53 5.95 -82.03 -0.49 1.04 16 22 C -0.06 -0.60 3.43 -89.44 -0.31 -0.90 16 23 H 0.13 1.66 5.74 -51.93 -0.30 1.36 16 24 C -0.15 -1.27 6.50 -24.70 -0.16 -1.43 16 25 C 0.05 0.46 7.79 37.88 0.30 0.75 16 26 O -0.38 -4.34 11.36 -35.23 -0.40 -4.74 16 27 C 0.07 0.67 7.25 38.18 0.28 0.95 16 28 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.38 9.92 7.67 -40.82 -0.31 9.61 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.40 3.02 7.40 -40.82 -0.30 2.72 16 37 H 0.19 0.42 7.46 -52.49 -0.39 0.03 16 38 H 0.08 0.71 7.85 -51.93 -0.41 0.30 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.65 7.94 -51.93 -0.41 0.24 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -35.57 360.47 -8.52 -44.09 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.54 Total: 5.60 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.76 Total: -0.37 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.69 Total: -58.98 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.32 Total: -13.08 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.57 -8.52 -44.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163387339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.141 kcal (2) G-P(sol) polarization free energy of solvation -35.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds