Wall clock time and date at job start Fri Apr 10 2020 22:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86790 * 120.00163 * 2 1 4 4 H 1.48501 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47001 * 300.00307 * 3 2 1 6 6 H 1.48500 * 109.47147 * 60.00105 * 3 2 1 7 7 C 1.38816 * 119.99652 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99463 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99648 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47089 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47252 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.47027 * 180.02562 * 12 11 10 14 14 C 1.34781 * 120.00029 * 180.02562 * 13 12 11 15 15 O 1.21606 * 119.99687 * 359.97438 * 14 13 12 16 16 C 1.47429 * 120.00533 * 180.02562 * 14 13 12 17 17 C 1.38048 * 126.40981 * 0.02562 * 16 14 13 18 18 N 1.34260 * 107.41620 * 179.97438 * 17 16 14 19 19 H 0.97003 * 125.75401 * 180.02562 * 18 17 16 20 20 N 1.39933 * 108.48834 * 359.79163 * 18 17 16 21 21 C 1.30447 * 108.90289 * 0.36088 * 20 18 17 22 22 C 1.50693 * 125.99283 * 179.90654 * 21 20 18 23 23 H 1.09006 * 110.99101 * 182.43660 * 22 21 20 24 24 C 1.55457 * 111.14641 * 306.61200 * 22 21 20 25 25 C 1.54382 * 102.18540 * 151.99221 * 24 22 21 26 26 O 1.43233 * 107.66464 * 338.74226 * 25 24 22 27 27 C 1.43650 * 109.97542 * 358.24175 * 26 25 24 28 28 H 0.97003 * 119.99989 * 359.97438 * 1 2 3 29 29 H 0.96992 * 120.00231 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47266 * 60.00071 * 10 9 7 31 31 H 1.08998 * 109.47214 * 300.00006 * 10 9 7 32 32 H 1.09001 * 109.47019 * 59.99907 * 11 10 9 33 33 H 1.08999 * 109.47346 * 300.00552 * 11 10 9 34 34 H 1.09001 * 109.47066 * 60.00081 * 12 11 10 35 35 H 1.08999 * 109.47514 * 300.00594 * 12 11 10 36 36 H 0.96998 * 120.00216 * 0.02562 * 13 12 11 37 37 H 1.08000 * 126.28905 * 0.02562 * 17 16 14 38 38 H 1.08994 * 110.83103 * 33.84286 * 24 22 21 39 39 H 1.08999 * 110.92148 * 270.18164 * 24 22 21 40 40 H 1.09002 * 109.83024 * 219.18066 * 25 24 22 41 41 H 1.08996 * 109.83002 * 98.29659 * 25 24 22 42 42 H 1.08996 * 110.30866 * 143.34644 * 27 26 25 43 43 H 1.08998 * 110.30791 * 265.41708 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8198 -0.0012 12 6 1.8287 -6.1448 -0.0018 13 7 0.8767 -7.2582 -0.0031 14 6 1.3259 -8.5290 -0.0033 15 8 2.5214 -8.7512 -0.0029 16 6 0.3679 -9.6496 -0.0051 17 6 -1.0090 -9.5505 -0.0072 18 7 -1.5018 -10.7994 -0.0089 19 1 -2.4421 -11.0377 -0.0109 20 7 -0.4302 -11.6992 -0.0127 21 6 0.6870 -11.0259 -0.0056 22 6 2.0749 -11.6131 -0.0045 23 1 2.8305 -10.8290 0.0454 24 6 2.2509 -12.6344 1.1542 25 6 3.3247 -13.5880 0.5878 26 8 3.3156 -13.4548 -0.8383 27 6 2.2965 -12.5246 -1.2378 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6847 -3.7146 0.8895 31 1 2.6847 -3.7146 -0.8905 32 1 0.4374 -4.7618 -0.8914 33 1 0.4367 -4.7622 0.8885 34 1 2.4553 -6.2030 0.8882 35 1 2.4555 -6.2021 -0.8917 36 1 -0.0770 -7.0810 -0.0037 37 1 -1.5841 -8.6363 -0.0082 38 1 1.3199 -13.1681 1.3452 39 1 2.6085 -12.1403 2.0576 40 1 3.0897 -14.6157 0.8647 41 1 4.3049 -13.3148 0.9784 42 1 2.6359 -11.9340 -2.0887 43 1 1.3777 -13.0546 -1.4884 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163387339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:07:08 Heat of formation + Delta-G solvation = -34.757518 kcal Electronic energy + Delta-G solvation = -24326.577359 eV Core-core repulsion = 20600.098847 eV Total energy + Delta-G solvation = -3726.478512 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.56960 -40.21550 -40.14162 -37.45157 -35.88980 -34.57046 -33.77522 -32.05082 -31.64734 -30.62037 -29.94453 -26.99382 -24.82066 -24.47781 -23.53112 -23.07868 -22.55213 -21.10093 -20.56943 -19.56787 -19.01608 -17.53209 -17.40113 -16.99458 -16.93607 -16.79464 -16.33979 -16.05485 -15.82782 -15.29256 -15.21124 -15.11646 -14.66282 -14.51891 -14.43489 -14.23472 -13.76718 -13.27887 -12.86904 -12.83657 -12.64673 -12.56039 -12.44143 -12.38452 -12.11046 -12.02308 -12.00492 -11.86528 -11.75809 -10.94076 -10.82080 -10.57653 -10.51075 -10.17527 -9.75976 -8.99894 -7.95924 -5.24343 0.52472 0.96082 1.49034 1.49165 1.59619 1.73380 2.26087 2.41489 2.57597 2.85538 3.36427 3.38275 3.54347 3.62757 3.81207 3.98116 4.02824 4.14949 4.19165 4.22524 4.26423 4.34332 4.36771 4.50530 4.58087 4.69796 4.78952 4.79105 4.83211 4.84358 4.94623 4.96221 5.15031 5.27711 5.35003 5.36509 5.50584 5.51256 5.95211 6.22648 6.27570 6.43018 6.68206 7.32969 7.34108 8.09282 8.33042 9.27709 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.028075 B = 0.002077 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.076397 B =13480.750581 C =14240.273228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.150 3.850 11 C -0.117 4.117 12 C 0.136 3.864 13 N -0.712 5.712 14 C 0.590 3.410 15 O -0.584 6.584 16 C -0.316 4.316 17 C 0.141 3.859 18 N -0.442 5.442 19 H 0.463 0.537 20 N -0.312 5.312 21 C 0.133 3.867 22 C -0.059 4.059 23 H 0.112 0.888 24 C -0.137 4.137 25 C 0.048 3.952 26 O -0.403 6.403 27 C 0.068 3.932 28 H 0.252 0.748 29 H 0.376 0.624 30 H 0.021 0.979 31 H 0.021 0.979 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.414 0.586 37 H 0.235 0.765 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.933 -27.725 1.368 28.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.023 3.977 11 C -0.155 4.155 12 C 0.011 3.989 13 N -0.364 5.364 14 C 0.378 3.622 15 O -0.465 6.465 16 C -0.331 4.331 17 C -0.014 4.014 18 N -0.148 5.148 19 H 0.312 0.688 20 N -0.134 5.134 21 C -0.034 4.034 22 C -0.079 4.079 23 H 0.130 0.870 24 C -0.175 4.175 25 C -0.028 4.028 26 O -0.323 6.323 27 C -0.009 4.009 28 H 0.061 0.939 29 H 0.208 0.792 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.251 0.749 37 H 0.251 0.749 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.329 -29.061 1.228 29.407 hybrid contribution -0.630 2.088 0.119 2.184 sum -4.960 -26.973 1.347 27.458 Atomic orbital electron populations 1.69805 1.06470 1.26063 1.59520 1.25568 0.96499 1.01085 1.03694 0.85075 0.78200 0.79770 0.76729 1.19219 1.21942 1.21913 1.19674 0.91547 0.85447 1.41149 0.90787 1.42545 1.05769 1.01152 1.89491 1.20697 0.94198 0.84821 0.97939 1.21692 0.98431 0.92007 1.03401 1.21062 0.91677 0.84236 1.01915 1.45665 1.11050 1.04538 1.75152 1.17531 0.87212 0.82407 0.75004 1.90702 1.17927 1.84970 1.52893 1.20233 0.93690 0.93368 1.25807 1.23794 0.93177 0.91564 0.92877 1.46156 1.09844 1.03538 1.55292 0.68807 1.77064 0.93701 1.16203 1.26462 1.21883 0.94266 0.90956 0.96319 1.21574 0.91223 0.98609 0.96500 0.87041 1.23171 1.00224 0.95912 0.98229 1.23284 0.99517 1.00094 0.79915 1.88367 1.56741 1.64250 1.22963 1.23357 0.91545 0.89502 0.96477 0.93930 0.79156 0.96066 0.96103 0.90555 0.90522 0.92023 0.92074 0.74935 0.74892 0.89780 0.89020 0.89743 0.90246 0.89681 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.11 13.06 21.65 0.28 -57.83 16 2 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 3 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 7 C -0.25 -13.68 9.99 84.03 0.84 -12.84 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 9 N -0.75 -37.02 5.60 -343.44 -1.92 -38.95 16 10 C 0.15 5.72 6.26 86.38 0.54 6.26 16 11 C -0.12 -3.18 5.44 30.59 0.17 -3.02 16 12 C 0.14 3.32 5.67 86.38 0.49 3.81 16 13 N -0.71 -13.83 5.54 -466.38 -2.59 -16.41 16 14 C 0.59 14.01 7.81 86.66 0.68 14.69 16 15 O -0.58 -18.57 14.61 -4.05 -0.06 -18.63 16 16 C -0.32 -5.85 6.13 -20.15 -0.12 -5.97 16 17 C 0.14 1.26 11.52 84.28 0.97 2.23 16 18 N -0.44 -4.08 7.29 -56.31 -0.41 -4.49 16 19 H 0.46 0.74 8.96 -213.42 -1.91 -1.17 16 20 N -0.31 -5.46 12.31 -46.68 -0.57 -6.03 16 21 C 0.13 2.72 5.95 43.51 0.26 2.98 16 22 C -0.06 -1.26 3.43 -10.03 -0.03 -1.29 16 23 H 0.11 2.93 5.74 -2.38 -0.01 2.92 16 24 C -0.14 -2.37 6.50 31.91 0.21 -2.16 16 25 C 0.05 0.82 7.79 72.45 0.56 1.38 16 26 O -0.40 -9.29 11.36 -148.98 -1.69 -10.98 16 27 C 0.07 1.45 7.25 72.65 0.53 1.98 16 28 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.38 19.40 7.67 -92.71 -0.71 18.69 16 30 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.41 4.99 7.40 -92.71 -0.69 4.30 16 37 H 0.23 -0.21 7.46 -2.91 -0.02 -0.24 16 38 H 0.08 1.40 7.85 -2.39 -0.02 1.38 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 1.35 7.94 -2.39 -0.02 1.33 16 Total: -1.00 -77.57 360.47 -1.63 -79.20 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -2.25 Total: 22.18 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 5.55 Total: 4.18 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -5.21 Total: -123.71 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -1.75 Total: -29.61 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -77.57 -1.63 -79.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163387339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.445 kcal (2) G-P(sol) polarization free energy of solvation -77.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds