Wall clock time and date at job start Fri Apr 10 2020 22:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 119.99504 * 2 1 4 4 H 1.07999 * 120.00038 * 144.25304 * 3 2 1 5 5 C 1.38807 * 120.00333 * 324.24672 * 3 2 1 6 6 N 1.31623 * 120.00367 * 157.67023 * 5 3 2 7 7 Si 1.86801 * 120.00041 * 337.67799 * 5 3 2 8 8 H 1.48495 * 109.47683 * 95.59711 * 7 5 3 9 9 H 1.48498 * 109.47342 * 215.60072 * 7 5 3 10 10 H 1.48509 * 109.46872 * 335.59440 * 7 5 3 11 11 C 1.46493 * 120.00616 * 179.97438 * 2 1 3 12 12 H 1.08992 * 110.92184 * 177.55172 * 11 2 1 13 13 C 1.55161 * 111.00261 * 301.45452 * 11 2 1 14 14 C 1.54326 * 102.94120 * 153.57242 * 13 11 2 15 15 N 1.47021 * 107.27450 * 337.80777 * 14 13 11 16 16 C 1.34774 * 125.65040 * 178.89431 * 15 14 13 17 17 O 1.21282 * 119.99869 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.99794 * 0.02562 * 16 15 14 19 19 C 1.52999 * 109.46664 * 179.97438 * 18 16 15 20 20 C 1.53007 * 109.46996 * 180.02562 * 19 18 16 21 21 C 1.52999 * 109.46996 * 180.02562 * 20 19 18 22 22 F 1.39903 * 109.47100 * 60.00121 * 21 20 19 23 23 F 1.39900 * 109.46886 * 179.97438 * 21 20 19 24 24 F 1.39890 * 109.47372 * 299.99512 * 21 20 19 25 25 C 1.47423 * 108.70010 * 358.94005 * 15 14 13 26 26 H 1.08999 * 109.47174 * 267.27099 * 1 2 3 27 27 H 1.08999 * 109.47118 * 27.26791 * 1 2 3 28 28 H 1.09005 * 109.46689 * 147.27342 * 1 2 3 29 29 H 0.96999 * 120.00383 * 180.02562 * 6 5 3 30 30 H 1.08994 * 110.72008 * 271.93639 * 13 11 2 31 31 H 1.09004 * 110.71830 * 35.21456 * 13 11 2 32 32 H 1.08998 * 109.88365 * 97.22751 * 14 13 11 33 33 H 1.09005 * 109.88112 * 218.23605 * 14 13 11 34 34 H 1.09000 * 109.47352 * 299.99812 * 18 16 15 35 35 H 1.08996 * 109.46988 * 60.00307 * 18 16 15 36 36 H 1.09005 * 109.47578 * 299.99958 * 19 18 16 37 37 H 1.08998 * 109.47629 * 60.00369 * 19 18 16 38 38 H 1.09000 * 109.47002 * 299.99865 * 20 19 18 39 39 H 1.08998 * 109.46814 * 59.99645 * 20 19 18 40 40 H 1.09007 * 110.36990 * 265.28946 * 25 15 14 41 41 H 1.09000 * 110.36627 * 142.97028 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0770 1.2742 0.5464 5 6 1.6517 2.2748 -0.7024 6 7 2.0235 3.4945 -0.3759 7 14 0.4538 2.0092 -2.1109 8 1 -0.9370 2.1607 -1.6131 9 1 0.7107 3.0125 -3.1751 10 1 0.6356 0.6431 -2.6643 11 6 2.1976 -1.2686 0.0006 12 1 3.2730 -1.0970 -0.0430 13 6 1.8211 -2.1276 1.2366 14 6 2.0897 -3.5678 0.7514 15 7 2.0421 -3.5494 -0.7179 16 6 2.2480 -4.6099 -1.5238 17 8 2.1842 -4.4780 -2.7278 18 6 2.5576 -5.9594 -0.9289 19 6 2.7451 -6.9810 -2.0524 20 6 3.0587 -8.3514 -1.4485 21 6 3.2469 -9.3728 -2.5719 22 9 4.3056 -8.9721 -3.3940 23 9 3.5342 -10.6257 -2.0197 24 9 2.0735 -9.4546 -3.3292 25 6 1.7329 -2.1787 -1.1637 26 1 -0.3633 -0.0489 1.0265 27 1 -0.3633 0.9135 -0.4708 28 1 -0.3633 -0.8646 -0.5556 29 1 1.6753 4.2554 -0.8665 30 1 2.4586 -1.8816 2.0858 31 1 0.7695 -1.9965 1.4916 32 1 3.0743 -3.8943 1.0863 33 1 1.3244 -4.2390 1.1410 34 1 3.4720 -5.8955 -0.3392 35 1 1.7330 -6.2718 -0.2882 36 1 1.8304 -7.0449 -2.6419 37 1 3.5694 -6.6689 -2.6935 38 1 3.9733 -8.2879 -0.8588 39 1 2.2341 -8.6633 -0.8075 40 1 0.6614 -2.0660 -1.3289 41 1 2.2847 -1.9421 -2.0735 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192481115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:07:39 Heat of formation + Delta-G solvation = -170.661550 kcal Electronic energy + Delta-G solvation = -25606.784785 eV Core-core repulsion = 21300.263541 eV Total energy + Delta-G solvation = -4306.521244 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.39443 -47.90741 -47.85624 -39.99553 -37.79324 -35.27500 -35.02305 -31.94329 -30.60615 -29.80687 -28.16931 -26.32501 -25.04287 -23.46089 -22.41097 -21.92687 -19.51307 -19.21276 -18.85820 -18.55725 -17.78568 -17.13295 -16.77242 -16.42927 -15.87772 -15.12931 -15.06655 -14.80114 -14.58911 -14.30084 -14.05388 -14.02693 -13.92412 -13.85644 -13.49422 -13.09988 -12.84661 -12.78270 -12.67709 -12.36284 -12.20761 -12.08774 -12.00700 -11.80214 -11.73771 -11.23319 -10.91672 -10.82934 -10.58320 -10.24294 -10.00714 -9.78600 -9.63779 -8.61482 -8.48149 -6.97410 -6.08261 -3.50637 2.43188 2.67688 3.02840 3.26383 3.44263 3.48845 3.49102 3.68714 3.71627 4.34197 4.44718 4.52107 4.66879 4.72400 4.83479 4.92287 4.99860 5.06163 5.16621 5.21125 5.28503 5.35084 5.60156 5.63210 5.67745 5.81932 5.84092 6.05419 6.15567 6.27366 6.34847 6.40253 6.57431 6.61105 6.73162 7.64870 7.92542 8.22314 8.26924 8.85479 9.60107 9.97578 11.06744 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.031976 B = 0.002554 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.439267 B =10962.099549 C =11338.697363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.595 5.595 3 C -0.275 4.275 4 H 0.083 0.917 5 C 0.037 3.963 6 N -0.897 5.897 7 Si 0.882 3.118 8 H -0.286 1.286 9 H -0.301 1.301 10 H -0.269 1.269 11 C 0.171 3.829 12 H 0.088 0.912 13 C -0.151 4.151 14 C 0.103 3.897 15 N -0.614 5.614 16 C 0.523 3.477 17 O -0.545 6.545 18 C -0.132 4.132 19 C -0.111 4.111 20 C -0.166 4.166 21 C 0.452 3.548 22 F -0.183 7.183 23 F -0.188 7.188 24 F -0.183 7.183 25 C 0.080 3.920 26 H 0.020 0.980 27 H 0.048 0.952 28 H 0.032 0.968 29 H 0.265 0.735 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.011 -24.968 2.522 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.317 5.317 3 C -0.404 4.404 4 H 0.100 0.900 5 C -0.165 4.165 6 N -0.537 5.537 7 Si 0.713 3.287 8 H -0.214 1.214 9 H -0.229 1.229 10 H -0.193 1.193 11 C 0.062 3.938 12 H 0.106 0.894 13 C -0.191 4.191 14 C -0.021 4.021 15 N -0.349 5.349 16 C 0.311 3.689 17 O -0.422 6.422 18 C -0.172 4.172 19 C -0.149 4.149 20 C -0.204 4.204 21 C 0.398 3.602 22 F -0.164 7.164 23 F -0.169 7.169 24 F -0.164 7.164 25 C -0.044 4.044 26 H 0.038 0.962 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.084 0.916 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.983 -24.754 1.774 24.837 hybrid contribution -0.738 -0.205 -0.908 1.188 sum 0.246 -24.959 0.866 24.975 Atomic orbital electron populations 1.21370 0.84711 0.99274 0.98433 1.43994 1.00576 1.01349 1.85742 1.18791 1.08634 0.86171 1.26758 0.89977 1.25452 0.98208 0.95208 0.97600 1.69856 1.45963 0.97723 1.40157 0.86885 0.80309 0.77973 0.83566 1.21417 1.22879 1.19327 1.21613 0.96987 0.85168 0.90035 0.89418 1.23159 1.02822 0.92688 1.00456 1.22055 1.00903 0.99160 0.79946 1.48541 1.69392 1.09625 1.07307 1.20185 0.77079 0.85171 0.86482 1.90723 1.52015 1.85015 1.14484 1.21553 1.04138 0.92349 0.99124 1.21355 1.04928 0.90598 0.98018 1.22919 1.07076 0.94538 0.95914 1.20601 0.73860 0.81695 0.84073 1.93200 1.57857 1.90397 1.74952 1.93186 1.93520 1.44918 1.85291 1.93194 1.48412 1.96467 1.78375 1.23077 1.00974 0.79815 1.00533 0.96211 0.93412 0.94930 0.92523 0.90157 0.90650 0.91608 0.91919 0.88536 0.88673 0.89689 0.89596 0.87089 0.87139 0.91578 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.21 8.40 59.85 0.50 2.71 16 2 N -0.59 -13.34 2.55 -171.04 -0.44 -13.78 16 3 C -0.28 -7.39 9.89 -15.06 -0.15 -7.54 16 4 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 5 C 0.04 1.03 5.30 -17.43 -0.09 0.94 16 6 N -0.90 -26.75 13.97 55.49 0.78 -25.98 16 7 Si 0.88 22.00 24.95 -169.99 -4.24 17.75 16 8 H -0.29 -6.90 6.67 56.52 0.38 -6.52 16 9 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.17 3.11 3.54 -65.78 -0.23 2.88 16 12 H 0.09 1.65 7.96 -51.93 -0.41 1.23 16 13 C -0.15 -2.08 6.54 -24.89 -0.16 -2.25 16 14 C 0.10 1.12 6.49 -3.06 -0.02 1.10 16 15 N -0.61 -8.72 3.33 -170.52 -0.57 -9.29 16 16 C 0.52 7.28 7.85 -10.99 -0.09 7.20 16 17 O -0.54 -9.93 16.24 5.56 0.09 -9.84 16 18 C -0.13 -1.09 4.89 -27.88 -0.14 -1.23 16 19 C -0.11 -0.93 4.26 -26.73 -0.11 -1.05 16 20 C -0.17 -0.94 5.26 -26.73 -0.14 -1.08 16 21 C 0.45 3.68 3.16 37.16 0.12 3.79 16 22 F -0.18 -1.77 16.80 2.25 0.04 -1.74 16 23 F -0.19 -1.59 17.32 2.25 0.04 -1.55 16 24 F -0.18 -1.77 16.80 2.25 0.04 -1.73 16 25 C 0.08 1.41 6.47 -2.53 -0.02 1.40 16 26 H 0.02 0.38 7.98 -51.93 -0.41 -0.03 16 27 H 0.05 1.09 3.16 -51.93 -0.16 0.93 16 28 H 0.03 0.60 6.00 -51.93 -0.31 0.29 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.06 7.17 -51.93 -0.37 0.69 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.84 7.76 -51.93 -0.40 0.43 16 37 H 0.09 0.85 7.76 -51.93 -0.40 0.45 16 38 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 1.22 5.99 -51.92 -0.31 0.91 16 41 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -32.41 340.04 -5.42 -37.83 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -5.75 Total: -3.69 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -0.53 Total: 6.88 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.23 Total: -49.04 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.11 Total: -5.01 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.24 Total: 17.75 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.41 -5.42 -37.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192481115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.832 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds