Wall clock time and date at job start Fri Apr 10 2020 22:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 119.99504 * 2 1 4 4 H 1.07999 * 120.00038 * 144.25304 * 3 2 1 5 5 C 1.38807 * 120.00333 * 324.24672 * 3 2 1 6 6 N 1.31623 * 120.00367 * 157.67023 * 5 3 2 7 7 Si 1.86801 * 120.00041 * 337.67799 * 5 3 2 8 8 H 1.48495 * 109.47683 * 95.59711 * 7 5 3 9 9 H 1.48498 * 109.47342 * 215.60072 * 7 5 3 10 10 H 1.48509 * 109.46872 * 335.59440 * 7 5 3 11 11 C 1.46493 * 120.00616 * 179.97438 * 2 1 3 12 12 H 1.08992 * 110.92184 * 177.55172 * 11 2 1 13 13 C 1.55161 * 111.00261 * 301.45452 * 11 2 1 14 14 C 1.54326 * 102.94120 * 153.57242 * 13 11 2 15 15 N 1.47021 * 107.27450 * 337.80777 * 14 13 11 16 16 C 1.34774 * 125.65040 * 178.89431 * 15 14 13 17 17 O 1.21282 * 119.99869 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.99794 * 0.02562 * 16 15 14 19 19 C 1.52999 * 109.46664 * 179.97438 * 18 16 15 20 20 C 1.53007 * 109.46996 * 180.02562 * 19 18 16 21 21 C 1.52999 * 109.46996 * 180.02562 * 20 19 18 22 22 F 1.39903 * 109.47100 * 60.00121 * 21 20 19 23 23 F 1.39900 * 109.46886 * 179.97438 * 21 20 19 24 24 F 1.39890 * 109.47372 * 299.99512 * 21 20 19 25 25 C 1.47423 * 108.70010 * 358.94005 * 15 14 13 26 26 H 1.08999 * 109.47174 * 267.27099 * 1 2 3 27 27 H 1.08999 * 109.47118 * 27.26791 * 1 2 3 28 28 H 1.09005 * 109.46689 * 147.27342 * 1 2 3 29 29 H 0.96999 * 120.00383 * 180.02562 * 6 5 3 30 30 H 1.08994 * 110.72008 * 271.93639 * 13 11 2 31 31 H 1.09004 * 110.71830 * 35.21456 * 13 11 2 32 32 H 1.08998 * 109.88365 * 97.22751 * 14 13 11 33 33 H 1.09005 * 109.88112 * 218.23605 * 14 13 11 34 34 H 1.09000 * 109.47352 * 299.99812 * 18 16 15 35 35 H 1.08996 * 109.46988 * 60.00307 * 18 16 15 36 36 H 1.09005 * 109.47578 * 299.99958 * 19 18 16 37 37 H 1.08998 * 109.47629 * 60.00369 * 19 18 16 38 38 H 1.09000 * 109.47002 * 299.99865 * 20 19 18 39 39 H 1.08998 * 109.46814 * 59.99645 * 20 19 18 40 40 H 1.09007 * 110.36990 * 265.28946 * 25 15 14 41 41 H 1.09000 * 110.36627 * 142.97028 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0770 1.2742 0.5464 5 6 1.6517 2.2748 -0.7024 6 7 2.0235 3.4945 -0.3759 7 14 0.4538 2.0092 -2.1109 8 1 -0.9370 2.1607 -1.6131 9 1 0.7107 3.0125 -3.1751 10 1 0.6356 0.6431 -2.6643 11 6 2.1976 -1.2686 0.0006 12 1 3.2730 -1.0970 -0.0430 13 6 1.8211 -2.1276 1.2366 14 6 2.0897 -3.5678 0.7514 15 7 2.0421 -3.5494 -0.7179 16 6 2.2480 -4.6099 -1.5238 17 8 2.1842 -4.4780 -2.7278 18 6 2.5576 -5.9594 -0.9289 19 6 2.7451 -6.9810 -2.0524 20 6 3.0587 -8.3514 -1.4485 21 6 3.2469 -9.3728 -2.5719 22 9 4.3056 -8.9721 -3.3940 23 9 3.5342 -10.6257 -2.0197 24 9 2.0735 -9.4546 -3.3292 25 6 1.7329 -2.1787 -1.1637 26 1 -0.3633 -0.0489 1.0265 27 1 -0.3633 0.9135 -0.4708 28 1 -0.3633 -0.8646 -0.5556 29 1 1.6753 4.2554 -0.8665 30 1 2.4586 -1.8816 2.0858 31 1 0.7695 -1.9965 1.4916 32 1 3.0743 -3.8943 1.0863 33 1 1.3244 -4.2390 1.1410 34 1 3.4720 -5.8955 -0.3392 35 1 1.7330 -6.2718 -0.2882 36 1 1.8304 -7.0449 -2.6419 37 1 3.5694 -6.6689 -2.6935 38 1 3.9733 -8.2879 -0.8588 39 1 2.2341 -8.6633 -0.8075 40 1 0.6614 -2.0660 -1.3289 41 1 2.2847 -1.9421 -2.0735 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192481115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:07:38 Heat of formation + Delta-G solvation = -191.904587 kcal Electronic energy + Delta-G solvation = -25607.705952 eV Core-core repulsion = 21300.263541 eV Total energy + Delta-G solvation = -4307.442411 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -51.04455 -48.55082 -48.54410 -41.12424 -39.09393 -36.66083 -35.90684 -33.83509 -31.87142 -30.65960 -29.35929 -28.12345 -26.11776 -24.71943 -23.64921 -22.56949 -20.99782 -20.18969 -19.50193 -19.22054 -19.02477 -18.56058 -17.85739 -17.71195 -17.06472 -16.47704 -16.08440 -15.60164 -15.47588 -15.32106 -15.02293 -14.93605 -14.72078 -14.70322 -14.67460 -14.58673 -14.34339 -14.06784 -13.80660 -13.60203 -13.38453 -13.33312 -13.00204 -12.77629 -12.54393 -12.42171 -12.30573 -12.20737 -12.05982 -11.81948 -11.63152 -11.44349 -10.92083 -10.67450 -9.64853 -8.82168 -8.24566 -5.61702 1.25692 1.39626 1.48541 1.64975 1.81411 2.03932 2.36764 2.92126 3.01548 3.07474 3.15735 3.29627 3.54964 3.86294 3.94073 3.98661 4.06097 4.18175 4.29405 4.33591 4.45715 4.51168 4.54562 4.58041 4.66466 4.71595 4.80818 4.92617 4.95931 5.00203 5.06330 5.17874 5.27465 5.30537 5.40033 5.88479 6.13556 6.60387 6.91362 7.17351 7.56858 7.97762 8.94866 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.031976 B = 0.002554 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.439267 B =10962.099549 C =11338.697363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.610 5.610 3 C -0.259 4.259 4 H 0.052 0.948 5 C -0.019 4.019 6 N -0.945 5.945 7 Si 0.942 3.058 8 H -0.271 1.271 9 H -0.311 1.311 10 H -0.268 1.268 11 C 0.162 3.838 12 H 0.072 0.928 13 C -0.140 4.140 14 C 0.107 3.893 15 N -0.616 5.616 16 C 0.513 3.487 17 O -0.600 6.600 18 C -0.118 4.118 19 C -0.111 4.111 20 C -0.152 4.152 21 C 0.444 3.556 22 F -0.197 7.197 23 F -0.189 7.189 24 F -0.196 7.196 25 C 0.088 3.912 26 H 0.038 0.962 27 H 0.026 0.974 28 H 0.056 0.944 29 H 0.264 0.736 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.058 0.942 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.272 -28.187 4.582 28.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.333 5.333 3 C -0.388 4.388 4 H 0.070 0.930 5 C -0.216 4.216 6 N -0.588 5.588 7 Si 0.772 3.228 8 H -0.198 1.198 9 H -0.240 1.240 10 H -0.193 1.193 11 C 0.054 3.946 12 H 0.090 0.910 13 C -0.179 4.179 14 C -0.015 4.015 15 N -0.349 5.349 16 C 0.304 3.696 17 O -0.481 6.481 18 C -0.157 4.157 19 C -0.149 4.149 20 C -0.190 4.190 21 C 0.391 3.609 22 F -0.178 7.178 23 F -0.171 7.171 24 F -0.178 7.178 25 C -0.037 4.037 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.076 0.924 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.234 -28.040 3.873 28.307 hybrid contribution -0.437 0.721 -1.523 1.741 sum -0.203 -27.320 2.350 27.421 Atomic orbital electron populations 1.21405 0.83548 0.99154 0.99711 1.44071 1.01441 1.01454 1.86286 1.18729 1.07421 0.87862 1.24833 0.93013 1.26017 1.00718 0.95023 0.99813 1.69965 1.48617 0.98535 1.41729 0.85913 0.79277 0.77227 0.80432 1.19801 1.23994 1.19273 1.21707 0.95826 0.84146 0.92873 0.90956 1.23045 1.03087 0.93464 0.98345 1.22283 1.04150 0.97680 0.77396 1.48632 1.69255 1.08056 1.08983 1.21322 0.75587 0.86774 0.85876 1.90705 1.54256 1.85984 1.17163 1.21612 1.06973 0.88004 0.99092 1.21270 1.03111 0.92476 0.98030 1.22927 1.09591 0.91575 0.94878 1.21108 0.73050 0.82310 0.84470 1.93174 1.58521 1.90519 1.75620 1.93181 1.93490 1.45227 1.85169 1.93169 1.49104 1.96561 1.78944 1.22646 0.99756 0.82459 0.98858 0.94333 0.95588 0.92592 0.92706 0.89042 0.90496 0.88402 0.88079 0.85215 0.85023 0.91779 0.91928 0.84383 0.84255 0.92399 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.21 8.40 127.77 1.07 5.29 16 2 N -0.61 -27.10 2.55 -695.03 -1.77 -28.87 16 3 C -0.26 -14.19 9.89 84.03 0.83 -13.36 16 4 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 5 C -0.02 -1.08 5.30 84.86 0.45 -0.63 16 6 N -0.94 -58.20 13.97 21.65 0.30 -57.89 16 7 Si 0.94 46.52 24.95 68.60 1.71 48.23 16 8 H -0.27 -12.58 6.67 99.48 0.66 -11.92 16 9 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 10 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 11 C 0.16 5.74 3.54 46.39 0.16 5.91 16 12 H 0.07 2.74 7.96 -2.39 -0.02 2.72 16 13 C -0.14 -3.36 6.54 31.78 0.21 -3.15 16 14 C 0.11 1.76 6.49 86.73 0.56 2.33 16 15 N -0.62 -15.74 3.33 -811.78 -2.70 -18.44 16 16 C 0.51 13.10 7.85 87.66 0.69 13.79 16 17 O -0.60 -21.91 16.24 -3.03 -0.05 -21.96 16 18 C -0.12 -1.40 4.89 29.85 0.15 -1.25 16 19 C -0.11 -1.58 4.26 30.60 0.13 -1.45 16 20 C -0.15 -1.11 5.26 30.60 0.16 -0.95 16 21 C 0.44 6.40 3.16 71.98 0.23 6.62 16 22 F -0.20 -3.66 16.80 44.97 0.76 -2.91 16 23 F -0.19 -2.79 17.32 44.97 0.78 -2.01 16 24 F -0.20 -3.59 16.80 44.97 0.76 -2.84 16 25 C 0.09 3.06 6.47 86.86 0.56 3.62 16 26 H 0.04 1.39 7.98 -2.39 -0.02 1.37 16 27 H 0.03 1.15 3.16 -2.39 -0.01 1.15 16 28 H 0.06 1.95 6.00 -2.38 -0.01 1.94 16 29 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 1.86 7.17 -2.39 -0.02 1.84 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 1.18 7.76 -2.38 -0.02 1.17 16 37 H 0.06 1.18 7.76 -2.39 -0.02 1.17 16 38 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.06 2.08 5.99 -2.38 -0.01 2.07 16 41 H 0.04 1.67 8.04 -2.39 -0.02 1.65 16 Total: -1.00 -76.20 340.04 5.98 -70.22 By element: Atomic # 1 Polarization: -1.28 SS G_CDS: 1.00 Total: -0.28 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 5.20 Total: 16.76 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -4.17 Total: -105.20 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.96 kcal Atomic # 9 Polarization: -10.05 SS G_CDS: 2.29 Total: -7.76 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.71 Total: 48.23 kcal Total: -76.20 5.98 -70.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192481115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.686 kcal (2) G-P(sol) polarization free energy of solvation -76.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds