Wall clock time and date at job start Fri Apr 10 2020 22:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35672 * 116.99857 * 2 1 4 4 C 1.37978 * 120.19873 * 0.23614 * 3 2 1 5 5 C 1.39621 * 119.93532 * 180.26995 * 4 3 2 6 6 C 1.48026 * 119.84041 * 179.74851 * 5 4 3 7 7 C 1.39604 * 120.14039 * 55.69089 * 6 5 4 8 8 C 1.37925 * 119.85073 * 179.70615 * 7 6 5 9 9 C 1.38399 * 120.14538 * 0.54386 * 8 7 6 10 10 C 1.50702 * 119.85765 * 179.72318 * 9 8 7 11 11 C 1.52998 * 117.49663 * 299.73177 * 10 9 8 12 12 C 1.53000 * 117.49756 * 8.35618 * 10 9 8 13 13 C 1.38361 * 120.28617 * 359.45631 * 9 8 7 14 14 C 1.37971 * 120.14270 * 0.26898 * 13 9 8 15 15 C 1.50700 * 120.06979 * 179.97438 * 14 13 9 16 16 C 1.40076 * 120.31960 * 359.46844 * 5 4 3 17 17 C 1.36113 * 120.39898 * 0.30363 * 16 5 4 18 18 C 1.40911 * 120.05811 * 359.94888 * 17 16 5 19 19 C 1.40832 * 120.16436 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00711 * 205.16842 * 19 18 17 21 21 C 1.40013 * 119.99508 * 25.17336 * 19 18 17 22 22 N 1.30829 * 119.99982 * 17.36162 * 21 19 18 23 23 Si 1.86800 * 119.99809 * 197.36434 * 21 19 18 24 24 H 1.48504 * 109.47122 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47263 * 119.99694 * 23 21 19 26 26 H 1.48496 * 109.46879 * 239.99939 * 23 21 19 27 27 H 1.09005 * 109.47033 * 299.99344 * 1 2 3 28 28 H 1.08998 * 109.47531 * 59.99429 * 1 2 3 29 29 H 1.09000 * 109.47408 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.03247 * 0.02562 * 4 3 2 31 31 H 1.08001 * 120.06984 * 359.95771 * 7 6 5 32 32 H 1.08002 * 119.92618 * 180.27140 * 8 7 6 33 33 H 1.09002 * 115.55963 * 154.03662 * 10 9 8 34 34 H 1.08994 * 117.50311 * 359.97438 * 11 10 9 35 35 H 1.09005 * 117.49503 * 214.97683 * 11 10 9 36 36 H 1.08997 * 117.50083 * 145.02227 * 12 10 9 37 37 H 1.08998 * 117.51613 * 359.97438 * 12 10 9 38 38 H 1.08000 * 119.92832 * 180.29499 * 13 9 8 39 39 H 1.08998 * 109.47021 * 93.43919 * 15 14 13 40 40 H 1.09002 * 109.46865 * 213.42955 * 15 14 13 41 41 H 1.08994 * 109.47441 * 333.43667 * 15 14 13 42 42 H 1.08003 * 119.80081 * 180.27093 * 16 5 4 43 43 H 1.07998 * 119.97028 * 179.97438 * 17 16 5 44 44 H 0.97002 * 119.99524 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2974 2.3686 0.0049 5 6 1.9369 3.6097 -0.0008 6 6 1.1329 4.8526 -0.0012 7 6 0.1845 5.0743 0.9990 8 6 -0.5571 6.2372 0.9964 9 6 -0.3706 7.1781 -0.0012 10 6 -1.1888 8.4437 -0.0014 11 6 -2.7092 8.3019 -0.0974 12 6 -2.0618 8.7206 1.2242 13 6 0.5677 6.9645 -0.9954 14 6 1.3200 5.8079 -1.0011 15 6 2.3411 5.5767 -2.0850 16 6 3.3357 3.6845 -0.0003 17 6 4.0861 2.5489 -0.0005 18 6 3.4577 1.2877 -0.0001 19 6 4.2320 0.1113 0.0003 20 1 3.8219 -0.8053 -0.3971 21 6 5.5335 0.1301 0.5161 22 7 5.9153 1.1114 1.2927 23 14 6.7249 -1.2457 0.0953 24 1 6.0531 -2.2277 -0.7933 25 1 7.9098 -0.6797 -0.5981 26 1 7.1586 -1.9238 1.3432 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2186 2.3164 0.0092 31 1 0.0348 4.3386 1.7754 32 1 -1.2880 6.4119 1.7720 33 1 -0.7308 9.2998 -0.4968 34 1 -3.1176 7.2933 -0.1609 35 1 -3.2515 9.0648 -0.6561 36 1 -2.1783 9.7588 1.5351 37 1 -2.0449 7.9873 2.0306 38 1 0.7118 7.7048 -1.7684 39 1 3.3159 5.9283 -1.7469 40 1 2.3972 4.5116 -2.3100 41 1 2.0490 6.1227 -2.9819 42 1 3.8217 4.6490 -0.0003 43 1 5.1641 2.6146 -0.0005 44 1 6.8171 1.1245 1.6497 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244276734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:40 Heat of formation + Delta-G solvation = 18.588644 kcal Electronic energy + Delta-G solvation = -24334.779460 eV Core-core repulsion = 20989.170724 eV Total energy + Delta-G solvation = -3345.608736 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.59417 -38.57710 -37.04735 -35.84352 -33.81166 -32.13287 -31.19450 -29.03847 -28.78986 -26.64028 -26.47436 -25.16580 -22.99060 -22.54491 -21.75949 -20.62775 -20.49511 -19.12120 -17.49194 -16.86739 -16.13990 -15.55619 -15.27258 -14.65804 -14.65124 -14.37253 -14.22505 -14.12432 -13.56310 -13.32524 -12.87915 -12.76138 -12.37799 -12.34783 -11.95975 -11.85636 -11.67699 -11.58307 -11.37295 -11.22519 -11.22112 -10.92875 -10.85246 -10.66818 -10.49320 -10.34222 -10.27117 -9.88933 -9.74886 -9.49454 -9.20237 -8.35738 -8.05796 -7.34703 -7.03824 -6.75947 -4.27666 1.61573 1.81960 2.68259 3.00992 3.06245 3.11813 3.14171 3.74789 3.90784 4.25491 4.50793 4.56772 4.59499 4.83456 4.97199 5.13991 5.30211 5.37113 5.48343 5.54893 5.57185 5.71598 5.74744 5.78771 5.80334 5.83477 5.97254 6.00933 6.07331 6.09625 6.13495 6.16638 6.32077 6.42836 6.47196 6.63990 6.84611 6.88335 6.93773 7.01789 7.14132 7.30371 7.32981 7.42848 7.71144 7.73589 8.02891 8.15395 8.37940 8.64210 8.77316 9.03273 10.11200 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.022343 B = 0.003278 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.862817 B = 8540.613510 C = 9198.592983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.313 6.313 3 C 0.006 3.994 4 C -0.151 4.151 5 C -0.169 4.169 6 C 0.007 3.993 7 C -0.118 4.118 8 C -0.125 4.125 9 C -0.078 4.078 10 C -0.107 4.107 11 C -0.174 4.174 12 C -0.181 4.181 13 C -0.113 4.113 14 C -0.085 4.085 15 C -0.108 4.108 16 C -0.093 4.093 17 C -0.154 4.154 18 C 0.106 3.894 19 C -0.436 4.436 20 H 0.085 0.915 21 C 0.072 3.928 22 N -0.787 5.787 23 Si 0.910 3.090 24 H -0.259 1.259 25 H -0.271 1.271 26 H -0.274 1.274 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.052 0.948 42 H 0.090 0.910 43 H 0.124 0.876 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 9.295 -2.242 13.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.227 6.227 3 C -0.038 4.038 4 C -0.170 4.170 5 C -0.170 4.170 6 C 0.007 3.993 7 C -0.136 4.136 8 C -0.143 4.143 9 C -0.078 4.078 10 C -0.125 4.125 11 C -0.211 4.211 12 C -0.218 4.218 13 C -0.131 4.131 14 C -0.085 4.085 15 C -0.165 4.165 16 C -0.112 4.112 17 C -0.173 4.173 18 C 0.103 3.897 19 C -0.465 4.465 20 H 0.103 0.897 21 C -0.146 4.146 22 N -0.412 5.412 23 Si 0.734 3.266 24 H -0.182 1.182 25 H -0.197 1.197 26 H -0.199 1.199 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.108 0.892 43 H 0.142 0.858 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.193 9.171 -2.097 13.153 hybrid contribution 0.234 -0.314 0.074 0.398 sum -8.959 8.857 -2.023 12.760 Atomic orbital electron populations 1.22720 0.81778 1.01688 0.99911 1.85965 1.18158 1.28168 1.90442 1.19063 0.92279 0.82577 1.09895 1.20581 0.97114 0.91846 1.07498 1.17717 0.92295 0.89833 1.17162 1.18887 0.94095 0.93584 0.92700 1.21275 0.96787 0.97002 0.98554 1.20818 1.00532 0.94404 0.98546 1.18948 0.97853 0.94670 0.96336 1.20966 0.91653 0.97225 1.02674 1.23004 0.94675 1.02814 1.00591 1.23046 1.04485 1.02249 0.91974 1.20632 0.96772 0.97166 0.98536 1.20017 0.97932 0.94025 0.96546 1.20769 0.97059 1.03261 0.95396 1.20361 0.92136 0.97178 1.01514 1.20752 0.99641 0.90478 1.06468 1.17115 0.87337 0.94076 0.91143 1.19527 0.96656 0.96894 1.33414 0.89736 1.25975 0.98909 0.97004 0.92718 1.69833 1.19238 1.30485 1.21640 0.86226 0.79852 0.81168 0.79352 1.18244 1.19651 1.19948 0.94210 0.94277 0.90056 0.88577 0.86468 0.86868 0.87472 0.88690 0.88857 0.88805 0.88382 0.86864 0.91557 0.90498 0.92854 0.89207 0.85787 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.81 101.05 0.99 1.60 16 2 O -0.31 -7.21 9.78 -18.72 -0.18 -7.40 16 3 C 0.01 0.15 6.71 -38.43 -0.26 -0.11 16 4 C -0.15 -3.38 8.57 -39.16 -0.34 -3.72 16 5 C -0.17 -3.67 4.53 -104.68 -0.47 -4.14 16 6 C 0.01 0.14 5.39 -104.88 -0.57 -0.42 16 7 C -0.12 -2.06 9.61 -39.19 -0.38 -2.43 16 8 C -0.13 -1.88 9.28 -39.64 -0.37 -2.25 16 9 C -0.08 -1.12 5.62 -104.52 -0.59 -1.71 16 10 C -0.11 -1.23 6.04 -91.77 -0.55 -1.78 16 11 C -0.17 -1.73 10.16 -26.73 -0.27 -2.00 16 12 C -0.18 -1.78 9.86 -26.73 -0.26 -2.04 16 13 C -0.11 -1.71 9.36 -39.63 -0.37 -2.08 16 14 C -0.09 -1.46 5.88 -104.23 -0.61 -2.07 16 15 C -0.11 -1.72 8.58 36.01 0.31 -1.41 16 16 C -0.09 -2.12 8.14 -39.66 -0.32 -2.45 16 17 C -0.15 -3.87 8.61 -39.33 -0.34 -4.21 16 18 C 0.11 2.80 5.58 -106.66 -0.60 2.21 16 19 C -0.44 -11.53 8.70 -37.94 -0.33 -11.86 16 20 H 0.08 2.23 7.65 -52.49 -0.40 1.83 16 21 C 0.07 1.78 5.14 -17.31 -0.09 1.69 16 22 N -0.79 -19.87 10.96 55.55 0.61 -19.26 16 23 Si 0.91 18.47 29.59 -169.99 -5.03 13.44 16 24 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 27 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 28 H 0.04 0.63 7.67 -51.93 -0.40 0.23 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.10 1.95 6.29 -52.48 -0.33 1.62 16 31 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.11 1.46 6.00 -52.49 -0.31 1.14 16 33 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.98 6.16 -51.93 -0.32 0.66 16 38 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 39 H 0.07 1.02 7.64 -51.93 -0.40 0.62 16 40 H 0.08 1.36 6.89 -51.93 -0.36 1.01 16 41 H 0.05 0.71 8.06 -51.93 -0.42 0.29 16 42 H 0.09 1.90 7.35 -52.48 -0.39 1.51 16 43 H 0.12 3.20 6.17 -52.49 -0.32 2.88 16 44 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -27.73 359.89 -10.73 -38.46 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.14 Total: 8.53 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: -5.41 Total: -39.19 kcal Atomic # 7 Polarization: -19.87 SS G_CDS: 0.61 Total: -19.26 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.18 Total: -7.40 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.73 -10.73 -38.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244276734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.053 kcal (2) G-P(sol) polarization free energy of solvation -27.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds