Wall clock time and date at job start Fri Apr 10 2020 22:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35672 * 116.99857 * 2 1 4 4 C 1.37978 * 120.19873 * 0.23614 * 3 2 1 5 5 C 1.39621 * 119.93532 * 180.26995 * 4 3 2 6 6 C 1.48026 * 119.84041 * 179.74851 * 5 4 3 7 7 C 1.39604 * 120.14039 * 55.69089 * 6 5 4 8 8 C 1.37925 * 119.85073 * 179.70615 * 7 6 5 9 9 C 1.38399 * 120.14538 * 0.54386 * 8 7 6 10 10 C 1.50702 * 119.85765 * 179.72318 * 9 8 7 11 11 C 1.52998 * 117.49663 * 299.73177 * 10 9 8 12 12 C 1.53000 * 117.49756 * 8.35618 * 10 9 8 13 13 C 1.38361 * 120.28617 * 359.45631 * 9 8 7 14 14 C 1.37971 * 120.14270 * 0.26898 * 13 9 8 15 15 C 1.50700 * 120.06979 * 179.97438 * 14 13 9 16 16 C 1.40076 * 120.31960 * 359.46844 * 5 4 3 17 17 C 1.36113 * 120.39898 * 0.30363 * 16 5 4 18 18 C 1.40911 * 120.05811 * 359.94888 * 17 16 5 19 19 C 1.40832 * 120.16436 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00711 * 205.16842 * 19 18 17 21 21 C 1.40013 * 119.99508 * 25.17336 * 19 18 17 22 22 N 1.30829 * 119.99982 * 17.36162 * 21 19 18 23 23 Si 1.86800 * 119.99809 * 197.36434 * 21 19 18 24 24 H 1.48504 * 109.47122 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47263 * 119.99694 * 23 21 19 26 26 H 1.48496 * 109.46879 * 239.99939 * 23 21 19 27 27 H 1.09005 * 109.47033 * 299.99344 * 1 2 3 28 28 H 1.08998 * 109.47531 * 59.99429 * 1 2 3 29 29 H 1.09000 * 109.47408 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.03247 * 0.02562 * 4 3 2 31 31 H 1.08001 * 120.06984 * 359.95771 * 7 6 5 32 32 H 1.08002 * 119.92618 * 180.27140 * 8 7 6 33 33 H 1.09002 * 115.55963 * 154.03662 * 10 9 8 34 34 H 1.08994 * 117.50311 * 359.97438 * 11 10 9 35 35 H 1.09005 * 117.49503 * 214.97683 * 11 10 9 36 36 H 1.08997 * 117.50083 * 145.02227 * 12 10 9 37 37 H 1.08998 * 117.51613 * 359.97438 * 12 10 9 38 38 H 1.08000 * 119.92832 * 180.29499 * 13 9 8 39 39 H 1.08998 * 109.47021 * 93.43919 * 15 14 13 40 40 H 1.09002 * 109.46865 * 213.42955 * 15 14 13 41 41 H 1.08994 * 109.47441 * 333.43667 * 15 14 13 42 42 H 1.08003 * 119.80081 * 180.27093 * 16 5 4 43 43 H 1.07998 * 119.97028 * 179.97438 * 17 16 5 44 44 H 0.97002 * 119.99524 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2974 2.3686 0.0049 5 6 1.9369 3.6097 -0.0008 6 6 1.1329 4.8526 -0.0012 7 6 0.1845 5.0743 0.9990 8 6 -0.5571 6.2372 0.9964 9 6 -0.3706 7.1781 -0.0012 10 6 -1.1888 8.4437 -0.0014 11 6 -2.7092 8.3019 -0.0974 12 6 -2.0618 8.7206 1.2242 13 6 0.5677 6.9645 -0.9954 14 6 1.3200 5.8079 -1.0011 15 6 2.3411 5.5767 -2.0850 16 6 3.3357 3.6845 -0.0003 17 6 4.0861 2.5489 -0.0005 18 6 3.4577 1.2877 -0.0001 19 6 4.2320 0.1113 0.0003 20 1 3.8219 -0.8053 -0.3971 21 6 5.5335 0.1301 0.5161 22 7 5.9153 1.1114 1.2927 23 14 6.7249 -1.2457 0.0953 24 1 6.0531 -2.2277 -0.7933 25 1 7.9098 -0.6797 -0.5981 26 1 7.1586 -1.9238 1.3432 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2186 2.3164 0.0092 31 1 0.0348 4.3386 1.7754 32 1 -1.2880 6.4119 1.7720 33 1 -0.7308 9.2998 -0.4968 34 1 -3.1176 7.2933 -0.1609 35 1 -3.2515 9.0648 -0.6561 36 1 -2.1783 9.7588 1.5351 37 1 -2.0449 7.9873 2.0306 38 1 0.7118 7.7048 -1.7684 39 1 3.3159 5.9283 -1.7469 40 1 2.3972 4.5116 -2.3100 41 1 2.0490 6.1227 -2.9819 42 1 3.8217 4.6490 -0.0003 43 1 5.1641 2.6146 -0.0005 44 1 6.8171 1.1245 1.6497 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244276734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:39 Heat of formation + Delta-G solvation = 7.760140 kcal Electronic energy + Delta-G solvation = -24335.249019 eV Core-core repulsion = 20989.170724 eV Total energy + Delta-G solvation = -3346.078296 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.95499 -40.15957 -38.28751 -37.37775 -35.55694 -33.41087 -32.74194 -30.67900 -30.49875 -28.13784 -27.87801 -26.74086 -24.32015 -23.43425 -22.94428 -22.22914 -22.21934 -20.31752 -19.34023 -18.38359 -17.32541 -17.17865 -16.68854 -16.24828 -16.14758 -15.92926 -15.68263 -15.28493 -14.83972 -14.70501 -14.53275 -14.04690 -13.94375 -13.82915 -13.41968 -13.18248 -13.02698 -12.95947 -12.83261 -12.64683 -12.58178 -12.38273 -12.18122 -12.01799 -11.84471 -11.69204 -11.49583 -11.36789 -11.23781 -11.13078 -11.01010 -9.63683 -9.54250 -9.02794 -8.83433 -8.56392 -6.20444 0.26550 0.55290 0.99002 1.12865 1.38258 1.49391 1.53745 2.22003 2.62536 2.78976 2.90195 3.22188 3.64939 3.68481 3.96311 4.07648 4.08759 4.10616 4.21770 4.32685 4.35208 4.43314 4.45196 4.48416 4.56476 4.63397 4.71123 4.82659 4.85756 4.87035 4.94519 5.00762 5.08081 5.14075 5.19438 5.25319 5.29266 5.36014 5.42646 5.42913 5.57812 5.74195 5.80906 5.85879 5.91863 6.17068 6.23745 6.28187 6.50847 6.77314 6.88499 7.21646 8.32432 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.022343 B = 0.003278 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.862817 B = 8540.613510 C = 9198.592983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.339 6.339 3 C -0.004 4.004 4 C -0.159 4.159 5 C -0.146 4.146 6 C -0.032 4.032 7 C -0.125 4.125 8 C -0.127 4.127 9 C -0.066 4.066 10 C -0.125 4.125 11 C -0.165 4.165 12 C -0.174 4.174 13 C -0.116 4.116 14 C -0.090 4.090 15 C -0.106 4.106 16 C -0.101 4.101 17 C -0.166 4.166 18 C 0.068 3.932 19 C -0.477 4.477 20 H 0.070 0.930 21 C 0.034 3.966 22 N -0.821 5.821 23 Si 0.981 3.019 24 H -0.262 1.262 25 H -0.260 1.260 26 H -0.265 1.265 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.141 0.859 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.509 11.626 -2.579 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.254 6.254 3 C -0.048 4.048 4 C -0.177 4.177 5 C -0.147 4.147 6 C -0.032 4.032 7 C -0.144 4.144 8 C -0.144 4.144 9 C -0.066 4.066 10 C -0.143 4.143 11 C -0.202 4.202 12 C -0.211 4.211 13 C -0.133 4.133 14 C -0.090 4.090 15 C -0.163 4.163 16 C -0.120 4.120 17 C -0.186 4.186 18 C 0.065 3.935 19 C -0.506 4.506 20 H 0.088 0.912 21 C -0.180 4.180 22 N -0.448 5.448 23 Si 0.802 3.198 24 H -0.185 1.185 25 H -0.185 1.185 26 H -0.190 1.190 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.154 0.846 33 H 0.141 0.859 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.158 0.842 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.233 11.514 -2.432 16.268 hybrid contribution 0.564 -0.797 0.179 0.992 sum -10.669 10.717 -2.253 15.289 Atomic orbital electron populations 1.23052 0.78815 1.04155 1.00704 1.85911 1.21294 1.27817 1.90393 1.19244 0.92222 0.83792 1.09587 1.20830 0.98110 0.91471 1.07335 1.18059 0.92172 0.91165 1.13316 1.18841 0.95785 0.93454 0.95090 1.21318 0.96802 0.98064 0.98168 1.21059 1.00450 0.93538 0.99384 1.19363 0.96927 0.95360 0.94960 1.21049 0.92306 0.96211 1.04774 1.23074 0.93234 1.03151 1.00768 1.23154 1.03011 1.03386 0.91537 1.20930 0.96220 0.96803 0.99386 1.20172 0.98343 0.94284 0.96234 1.20748 0.97152 1.01936 0.96420 1.20495 0.92860 0.96934 1.01679 1.20704 0.99181 0.91188 1.07527 1.17458 0.88704 0.94591 0.92744 1.19578 0.98413 0.96608 1.35992 0.91172 1.26741 0.99851 0.99512 0.91944 1.69870 1.20032 1.32308 1.22549 0.85172 0.77499 0.77933 0.79199 1.18546 1.18475 1.19017 0.93411 0.93259 0.86891 0.86528 0.86910 0.84563 0.85936 0.89422 0.86840 0.86897 0.88656 0.84156 0.91386 0.93139 0.90003 0.87933 0.87294 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.81 113.37 1.11 2.05 16 2 O -0.34 -16.15 9.78 -89.89 -0.88 -17.03 16 3 C 0.00 -0.21 6.71 23.01 0.15 -0.06 16 4 C -0.16 -7.24 8.57 22.54 0.19 -7.05 16 5 C -0.15 -6.47 4.53 -19.90 -0.09 -6.56 16 6 C -0.03 -1.19 5.39 -20.03 -0.11 -1.30 16 7 C -0.13 -4.24 9.61 22.53 0.22 -4.02 16 8 C -0.13 -3.50 9.28 22.23 0.21 -3.29 16 9 C -0.07 -1.69 5.62 -19.80 -0.11 -1.80 16 10 C -0.13 -2.35 6.04 -11.54 -0.07 -2.42 16 11 C -0.17 -2.59 10.16 30.60 0.31 -2.28 16 12 C -0.17 -2.70 9.86 30.60 0.30 -2.40 16 13 C -0.12 -3.15 9.36 22.24 0.21 -2.94 16 14 C -0.09 -2.97 5.88 -19.61 -0.12 -3.08 16 15 C -0.11 -3.27 8.58 71.24 0.61 -2.65 16 16 C -0.10 -4.79 8.14 22.22 0.18 -4.61 16 17 C -0.17 -8.88 8.61 22.43 0.19 -8.68 16 18 C 0.07 3.78 5.58 -21.19 -0.12 3.66 16 19 C -0.48 -26.82 8.70 23.34 0.20 -26.61 16 20 H 0.07 3.97 7.65 -2.91 -0.02 3.95 16 21 C 0.03 1.77 5.14 85.27 0.44 2.21 16 22 N -0.82 -43.50 10.96 21.84 0.24 -43.26 16 23 Si 0.98 39.29 29.59 68.60 2.03 41.32 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 25 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 26 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 27 H 0.05 1.53 7.65 -2.38 -0.02 1.51 16 28 H 0.05 1.55 7.67 -2.39 -0.02 1.54 16 29 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 30 H 0.12 4.72 6.29 -2.91 -0.02 4.70 16 31 H 0.11 3.81 8.06 -2.91 -0.02 3.79 16 32 H 0.14 3.09 6.00 -2.91 -0.02 3.07 16 33 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.54 6.16 -2.39 -0.01 1.53 16 38 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 39 H 0.07 2.05 7.64 -2.39 -0.02 2.03 16 40 H 0.05 1.81 6.89 -2.39 -0.02 1.79 16 41 H 0.08 2.00 8.06 -2.39 -0.02 1.98 16 42 H 0.10 4.47 7.35 -2.91 -0.02 4.45 16 43 H 0.11 6.03 6.17 -2.91 -0.02 6.01 16 44 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 Total: -1.00 -63.77 359.89 6.11 -57.66 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 1.01 Total: 33.14 kcal Atomic # 6 Polarization: -75.55 SS G_CDS: 3.72 Total: -71.84 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.24 Total: -43.26 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.88 Total: -17.03 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -63.77 6.11 -57.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244276734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.420 kcal (2) G-P(sol) polarization free energy of solvation -63.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds