Wall clock time and date at job start Fri Apr 10 2020 22:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99643 * 2 1 4 4 H 1.48500 * 109.46739 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47333 * 299.99747 * 3 2 1 6 6 H 1.48497 * 109.47119 * 60.00065 * 3 2 1 7 7 C 1.37877 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99909 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47134 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47110 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47420 * 55.00120 * 11 10 9 13 13 N 1.46903 * 109.47186 * 294.99559 * 11 10 9 14 14 C 1.50694 * 109.46906 * 175.00049 * 11 10 9 15 15 O 1.21296 * 120.00197 * 99.99817 * 14 11 10 16 16 N 1.34781 * 120.00241 * 279.99782 * 14 11 10 17 17 C 1.40156 * 120.00295 * 180.02562 * 16 14 11 18 18 C 1.40413 * 125.97350 * 359.97438 * 17 16 14 19 19 C 1.35235 * 107.86713 * 179.97438 * 18 17 16 20 20 C 1.50700 * 126.07006 * 179.97438 * 19 18 17 21 21 H 1.09003 * 110.41793 * 327.69616 * 20 19 18 22 22 C 1.54478 * 110.37139 * 90.00038 * 20 19 18 23 23 C 1.54510 * 104.06500 * 142.81210 * 22 20 19 24 24 C 1.54477 * 104.18108 * 359.93120 * 23 22 20 25 25 O 1.44415 * 110.37723 * 205.38269 * 20 19 18 26 26 N 1.34965 * 107.86033 * 0.26449 * 19 18 17 27 27 H 0.97010 * 125.97203 * 179.73449 * 26 19 18 28 28 N 1.31216 * 125.97359 * 180.02562 * 17 16 14 29 29 H 0.96992 * 119.99901 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47202 * 60.00609 * 9 7 2 31 31 H 1.09000 * 109.47410 * 300.00584 * 9 7 2 32 32 H 1.09001 * 109.46940 * 60.00007 * 10 9 7 33 33 H 1.09000 * 109.47088 * 300.00339 * 10 9 7 34 34 H 1.00902 * 111.00154 * 300.00471 * 13 11 10 35 35 H 1.00908 * 110.99872 * 63.95595 * 13 11 10 36 36 H 0.97003 * 119.99564 * 0.02562 * 16 14 11 37 37 H 1.07999 * 126.06548 * 0.02562 * 18 17 16 38 38 H 1.09000 * 110.51268 * 24.16636 * 22 20 19 39 39 H 1.09007 * 110.63128 * 261.51455 * 22 20 19 40 40 H 1.09002 * 110.51305 * 118.64650 * 23 22 20 41 41 H 1.08994 * 110.51141 * 241.21979 * 23 22 20 42 42 H 1.09006 * 110.37498 * 94.92285 * 24 23 22 43 43 H 1.09000 * 110.37254 * 217.25804 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7885 -5.0068 -0.8432 13 7 0.7283 -5.1189 1.2538 14 6 2.4550 -6.1297 -0.1250 15 8 2.7866 -6.7536 0.8609 16 7 2.9584 -6.4585 -1.3313 17 6 3.8644 -7.5216 -1.4465 18 6 4.3322 -8.3244 -0.3938 19 6 5.1869 -9.2342 -0.9141 20 6 5.9263 -10.2984 -0.1447 21 1 6.1617 -9.9470 0.8599 22 6 5.0882 -11.5943 -0.0785 23 6 6.1346 -12.7248 -0.1992 24 6 7.4825 -11.9809 -0.3261 25 8 7.1339 -10.6751 -0.8414 26 7 5.2652 -9.0157 -2.2436 27 1 5.8076 -9.5170 -2.8725 28 7 4.4246 -7.9399 -2.5569 29 1 -0.4849 0.8400 -0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6247 -2.5570 0.8896 32 1 2.8720 -3.6043 0.8895 33 1 2.8721 -3.6043 -0.8905 34 1 1.3479 -5.1034 2.0501 35 1 0.0234 -4.4009 1.3301 36 1 2.6935 -5.9593 -2.1197 37 1 4.0574 -8.2323 0.6465 38 1 4.3833 -11.6361 -0.9089 39 1 4.5605 -11.6623 0.8729 40 1 6.1259 -13.3501 0.6935 41 1 5.9455 -13.3268 -1.0879 42 1 7.9581 -11.8881 0.6504 43 1 8.1400 -12.5028 -1.0213 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326354195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:07:18 Heat of formation + Delta-G solvation = -14.473979 kcal Electronic energy + Delta-G solvation = -24711.251253 eV Core-core repulsion = 20985.652301 eV Total energy + Delta-G solvation = -3725.598951 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59694 -39.88946 -39.28259 -35.66958 -34.78642 -32.87831 -32.66799 -31.65471 -30.37699 -29.92657 -28.20281 -26.68301 -24.24201 -23.79488 -22.00215 -21.58003 -20.86010 -20.35255 -19.69028 -17.99347 -17.40389 -16.81191 -16.38030 -16.24846 -15.81863 -15.32793 -15.15383 -14.81500 -14.48296 -14.31271 -14.17015 -14.13707 -13.47045 -13.18834 -13.17801 -12.97713 -12.27011 -12.19454 -12.09131 -11.82956 -11.77695 -11.20130 -11.13438 -10.98184 -10.94013 -10.79497 -10.65948 -10.36135 -10.01869 -9.93220 -9.34411 -9.22983 -8.81415 -8.45163 -8.40603 -8.25591 -6.09419 -4.12356 1.63945 2.34755 2.38108 3.18890 3.26464 3.27441 3.34610 3.37663 3.39181 4.07824 4.21123 4.39295 4.42525 4.56629 4.75391 4.79917 4.94595 5.04390 5.10026 5.19926 5.22201 5.26962 5.35542 5.49560 5.50623 5.57483 5.63326 5.68044 5.68874 6.16442 6.25017 6.27435 6.47500 6.82911 6.83977 7.00563 7.27293 7.44358 7.50242 7.60311 7.82347 7.84178 7.88022 8.23715 8.30273 8.93799 9.52793 11.01482 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.028293 B = 0.002333 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.405668 B =11999.644330 C =12360.434143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.140 4.140 11 C 0.081 3.919 12 H 0.103 0.897 13 N -0.830 5.830 14 C 0.535 3.465 15 O -0.511 6.511 16 N -0.638 5.638 17 C 0.311 3.689 18 C -0.254 4.254 19 C 0.096 3.904 20 C 0.140 3.860 21 H 0.100 0.900 22 C -0.145 4.145 23 C -0.156 4.156 24 C 0.045 3.955 25 O -0.374 6.374 26 N -0.456 5.456 27 H 0.442 0.558 28 N -0.320 5.320 29 H 0.261 0.739 30 H 0.020 0.980 31 H 0.019 0.981 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.347 0.653 35 H 0.358 0.642 36 H 0.418 0.582 37 H 0.174 0.826 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.601 -24.935 -1.320 27.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.179 4.179 11 C -0.035 4.035 12 H 0.120 0.880 13 N -0.362 5.362 14 C 0.322 3.678 15 O -0.383 6.383 16 N -0.288 5.288 17 C 0.055 3.945 18 C -0.285 4.285 19 C -0.033 4.033 20 C 0.081 3.919 21 H 0.117 0.883 22 C -0.184 4.184 23 C -0.194 4.194 24 C -0.031 4.031 25 O -0.293 6.293 26 N -0.166 5.166 27 H 0.287 0.713 28 N -0.152 5.152 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.174 0.826 36 H 0.254 0.746 37 H 0.192 0.808 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.588 -25.613 -2.212 27.803 hybrid contribution 0.836 1.721 0.322 1.940 sum 11.424 -23.892 -1.890 26.551 Atomic orbital electron populations 1.69956 1.06000 1.26701 1.50518 1.25016 0.94883 0.99341 0.95126 0.86523 0.80124 0.83657 0.77646 1.19752 1.20948 1.20949 1.21209 0.93092 0.90835 1.50999 0.92619 1.19113 0.93676 0.91036 0.97480 1.22431 0.99988 0.93679 1.01847 1.21442 0.94396 0.91460 0.96161 0.87954 1.58739 1.18427 1.56084 1.02976 1.21149 0.80803 0.84515 0.81336 1.90558 1.58705 1.52218 1.36813 1.42884 1.42985 1.31018 1.11925 1.19135 0.92619 0.90639 0.92121 1.21513 1.05861 0.99139 1.01966 1.20648 0.99296 0.98080 0.85320 1.21512 0.83839 0.91771 0.94770 0.88277 1.22985 0.98470 0.92645 1.04256 1.22971 0.94656 0.98395 1.03349 1.23495 0.96783 0.83005 0.99866 1.89152 1.41958 1.34542 1.63669 1.45702 1.37338 1.27204 1.06360 0.71282 1.77373 1.12634 1.05225 1.19934 0.92924 0.96183 0.96293 0.92380 0.92307 0.83991 0.82649 0.74557 0.80838 0.90277 0.89311 0.90037 0.90476 0.91646 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.65 4.78 -26.73 -0.13 -2.78 16 11 C 0.08 1.31 3.21 -68.87 -0.22 1.09 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 13 N -0.83 -13.43 8.94 -5.66 -0.05 -13.48 16 14 C 0.53 8.66 7.05 -10.99 -0.08 8.58 16 15 O -0.51 -9.21 13.38 5.54 0.07 -9.14 16 16 N -0.64 -9.29 5.45 -11.13 -0.06 -9.35 16 17 C 0.31 4.76 8.11 -154.39 -1.25 3.51 16 18 C -0.25 -3.68 9.52 -39.83 -0.38 -4.06 16 19 C 0.10 1.15 6.10 -82.28 -0.50 0.65 16 20 C 0.14 1.25 3.77 -27.11 -0.10 1.15 16 21 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 22 C -0.15 -0.99 6.62 -25.16 -0.17 -1.16 16 23 C -0.16 -0.77 7.08 -25.16 -0.18 -0.94 16 24 C 0.05 0.25 7.65 37.93 0.29 0.54 16 25 O -0.37 -3.36 11.19 -35.23 -0.39 -3.75 16 26 N -0.46 -5.48 7.25 33.46 0.24 -5.24 16 27 H 0.44 4.20 8.90 -182.61 -1.62 2.58 16 28 N -0.32 -4.69 12.72 31.44 0.40 -4.29 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.46 6.87 -51.93 -0.36 0.11 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.35 5.62 8.58 -39.29 -0.34 5.29 16 35 H 0.36 5.82 7.55 -39.29 -0.30 5.52 16 36 H 0.42 5.20 8.82 -40.82 -0.36 4.84 16 37 H 0.17 2.66 5.92 -52.49 -0.31 2.35 16 38 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 39 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 358.23 15.07 5.40 5.40 Total: -1.00 -32.37 358.23 -9.40 -41.77 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -7.46 Total: 12.93 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -3.26 Total: -6.00 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 1.27 Total: -57.43 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.32 Total: -12.89 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.37 -9.40 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326354195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.295 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds