Wall clock time and date at job start Fri Apr 10 2020 22:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99878 * 2 1 4 4 H 1.48498 * 109.47018 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46964 * 300.00582 * 3 2 1 6 6 H 1.48505 * 109.46877 * 60.00123 * 3 2 1 7 7 C 1.37877 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99515 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99826 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46838 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46897 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47270 * 304.99847 * 11 10 9 13 13 N 1.46904 * 109.46681 * 64.99774 * 11 10 9 14 14 C 1.50697 * 109.46857 * 184.99272 * 11 10 9 15 15 O 1.21287 * 120.00636 * 259.99931 * 14 11 10 16 16 N 1.34782 * 119.99398 * 80.00577 * 14 11 10 17 17 C 1.40160 * 119.99700 * 179.97438 * 16 14 11 18 18 C 1.40408 * 125.97454 * 0.02562 * 17 16 14 19 19 C 1.35234 * 107.86913 * 180.02562 * 18 17 16 20 20 C 1.50703 * 126.07016 * 180.02562 * 19 18 17 21 21 H 1.09003 * 110.33316 * 35.69497 * 20 19 18 22 22 C 1.54481 * 110.37079 * 273.44822 * 20 19 18 23 23 C 1.54509 * 104.05840 * 217.19040 * 22 20 19 24 24 C 1.54477 * 104.06896 * 359.97438 * 23 22 20 25 25 O 1.44423 * 110.37250 * 157.94764 * 20 19 18 26 26 N 1.34966 * 107.86019 * 359.97438 * 19 18 17 27 27 H 0.97006 * 125.97615 * 180.26244 * 26 19 18 28 28 N 1.31213 * 125.97158 * 180.02562 * 17 16 14 29 29 H 0.97007 * 120.00178 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47616 * 60.00029 * 9 7 2 31 31 H 1.09004 * 109.46958 * 299.99542 * 9 7 2 32 32 H 1.08989 * 109.47340 * 59.99819 * 10 9 7 33 33 H 1.09004 * 109.46725 * 299.99382 * 10 9 7 34 34 H 1.00897 * 110.99953 * 296.04101 * 13 11 10 35 35 H 1.00897 * 111.00514 * 60.00440 * 13 11 10 36 36 H 0.97000 * 120.00438 * 359.97438 * 16 14 11 37 37 H 1.08001 * 126.06737 * 359.97302 * 18 17 16 38 38 H 1.08996 * 110.50743 * 335.82993 * 22 20 19 39 39 H 1.08999 * 110.51013 * 98.54427 * 22 20 19 40 40 H 1.09005 * 110.51226 * 118.64666 * 23 22 20 41 41 H 1.09002 * 110.50782 * 241.35422 * 23 22 20 42 42 H 1.08994 * 110.37316 * 142.80871 * 24 23 22 43 43 H 1.08993 * 110.37090 * 265.04280 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 1 0.7885 -5.0068 0.8421 13 7 0.7282 -5.1187 -1.2549 14 6 2.4551 -6.1297 0.1238 15 8 2.7866 -6.7536 -0.8621 16 7 2.9584 -6.4585 1.3301 17 6 3.8645 -7.5216 1.4453 18 6 4.3323 -8.3243 0.3925 19 6 5.1871 -9.2341 0.9126 20 6 5.9265 -10.2982 0.1432 21 1 6.2136 -9.9244 -0.8396 22 6 5.0534 -11.5648 0.0027 23 6 6.0592 -12.7304 0.1331 24 6 7.4211 -12.0302 0.3362 25 8 7.0927 -10.7305 0.8771 26 7 5.2613 -9.0191 2.2430 27 1 5.8027 -9.5212 2.8721 28 7 4.4240 -7.9405 2.5557 29 1 -0.4851 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6248 -2.5570 0.8898 32 1 2.8720 -3.6043 0.8893 33 1 2.8719 -3.6042 -0.8906 34 1 0.0233 -4.4008 -1.3310 35 1 1.3476 -5.1033 -2.0511 36 1 2.6935 -5.9594 2.1186 37 1 4.0575 -8.2322 -0.6479 38 1 4.3127 -11.6085 0.8011 39 1 4.5671 -11.5872 -0.9725 40 1 5.8157 -13.3504 0.9959 41 1 6.0702 -13.3291 -0.7778 42 1 8.0346 -12.5908 1.0414 43 1 7.9396 -11.9251 -0.6167 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326354196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:07:21 Heat of formation + Delta-G solvation = -14.513230 kcal Electronic energy + Delta-G solvation = -24715.501327 eV Core-core repulsion = 20989.900674 eV Total energy + Delta-G solvation = -3725.600653 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59687 -39.89483 -39.28886 -35.66955 -34.78633 -32.87955 -32.68260 -31.65324 -30.37254 -29.92714 -28.19230 -26.68293 -24.24131 -23.79692 -22.01281 -21.57061 -20.85677 -20.34815 -19.68541 -18.00074 -17.40285 -16.81979 -16.38373 -16.24824 -15.81463 -15.33589 -15.14848 -14.81481 -14.48397 -14.31413 -14.17096 -14.13614 -13.47268 -13.18901 -13.16704 -12.97281 -12.27275 -12.19459 -12.10158 -11.82778 -11.77682 -11.19874 -11.13466 -10.98128 -10.93916 -10.79235 -10.65980 -10.36754 -10.01919 -9.93241 -9.34423 -9.23010 -8.80942 -8.45257 -8.40562 -8.25586 -6.09454 -4.12394 1.64565 2.34966 2.38318 3.19250 3.26419 3.27512 3.34549 3.36779 3.38999 4.07753 4.21905 4.39245 4.42850 4.56798 4.75483 4.80075 4.95017 5.04597 5.10080 5.19995 5.22358 5.26954 5.35806 5.49581 5.51005 5.58325 5.63224 5.68041 5.68642 6.16452 6.24772 6.27375 6.47447 6.82968 6.83980 7.00735 7.27583 7.44389 7.50199 7.60289 7.82495 7.84229 7.87933 8.23734 8.30231 8.93734 9.52764 11.01420 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.028398 B = 0.002334 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.736298 B =11993.912815 C =12355.716701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.140 4.140 11 C 0.081 3.919 12 H 0.103 0.897 13 N -0.830 5.830 14 C 0.535 3.465 15 O -0.511 6.511 16 N -0.638 5.638 17 C 0.311 3.689 18 C -0.255 4.255 19 C 0.096 3.904 20 C 0.140 3.860 21 H 0.099 0.901 22 C -0.145 4.145 23 C -0.156 4.156 24 C 0.045 3.955 25 O -0.374 6.374 26 N -0.455 5.455 27 H 0.442 0.558 28 N -0.320 5.320 29 H 0.261 0.739 30 H 0.019 0.981 31 H 0.020 0.980 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.358 0.642 35 H 0.347 0.653 36 H 0.418 0.582 37 H 0.174 0.826 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.565 -24.902 1.217 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.179 4.179 11 C -0.035 4.035 12 H 0.120 0.880 13 N -0.362 5.362 14 C 0.322 3.678 15 O -0.383 6.383 16 N -0.288 5.288 17 C 0.055 3.945 18 C -0.285 4.285 19 C -0.033 4.033 20 C 0.081 3.919 21 H 0.117 0.883 22 C -0.183 4.183 23 C -0.193 4.193 24 C -0.032 4.032 25 O -0.293 6.293 26 N -0.166 5.166 27 H 0.287 0.713 28 N -0.152 5.152 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.174 0.826 35 H 0.160 0.840 36 H 0.254 0.746 37 H 0.192 0.808 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.547 -25.589 2.120 27.759 hybrid contribution 0.844 1.735 -0.328 1.957 sum 11.391 -23.854 1.792 26.495 Atomic orbital electron populations 1.69955 1.06004 1.26699 1.50509 1.25014 0.94880 0.99340 0.95124 0.86526 0.80126 0.83663 0.77648 1.19750 1.20946 1.20948 1.21209 0.93091 0.90835 1.51009 0.92619 1.19114 0.93675 0.91036 0.97478 1.22432 0.99988 0.93678 1.01844 1.21445 0.94397 0.91464 0.96159 0.87955 1.58731 1.18430 1.56093 1.02977 1.21145 0.80804 0.84512 0.81335 1.90556 1.58709 1.52213 1.36811 1.42886 1.42970 1.31036 1.11923 1.19133 0.92613 0.90634 0.92125 1.21502 1.05811 0.99256 1.01974 1.20660 0.99304 0.98073 0.85313 1.21524 0.84600 0.91654 0.94156 0.88301 1.22982 0.98519 0.92613 1.04194 1.22973 0.94794 0.98329 1.03253 1.23471 0.96737 0.83389 0.99569 1.89143 1.45611 1.34205 1.60346 1.45708 1.37515 1.27065 1.06310 0.71257 1.77373 1.12813 1.05057 1.19953 0.92923 0.96283 0.96195 0.92308 0.92382 0.82649 0.83990 0.74558 0.80841 0.90223 0.89296 0.90452 0.90013 0.88726 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.65 4.78 -26.72 -0.13 -2.78 16 11 C 0.08 1.31 3.21 -68.86 -0.22 1.09 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 13 N -0.83 -13.43 8.94 -5.65 -0.05 -13.48 16 14 C 0.53 8.66 7.05 -10.98 -0.08 8.58 16 15 O -0.51 -9.21 13.38 5.55 0.07 -9.13 16 16 N -0.64 -9.29 5.45 -11.13 -0.06 -9.35 16 17 C 0.31 4.76 8.11 -154.39 -1.25 3.51 16 18 C -0.25 -3.69 9.52 -39.84 -0.38 -4.06 16 19 C 0.10 1.15 6.11 -82.28 -0.50 0.65 16 20 C 0.14 1.24 3.76 -27.10 -0.10 1.14 16 21 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 22 C -0.14 -1.00 6.62 -25.16 -0.17 -1.16 16 23 C -0.16 -0.77 7.09 -25.16 -0.18 -0.95 16 24 C 0.04 0.25 7.63 37.93 0.29 0.54 16 25 O -0.37 -3.34 11.14 -35.23 -0.39 -3.73 16 26 N -0.46 -5.50 7.24 33.47 0.24 -5.26 16 27 H 0.44 4.23 8.84 -182.61 -1.61 2.62 16 28 N -0.32 -4.70 12.72 31.44 0.40 -4.30 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.02 0.46 6.87 -51.93 -0.36 0.11 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.36 5.82 7.55 -39.29 -0.30 5.52 16 35 H 0.35 5.62 8.58 -39.29 -0.34 5.28 16 36 H 0.42 5.20 8.82 -40.82 -0.36 4.84 16 37 H 0.17 2.66 5.92 -52.49 -0.31 2.35 16 38 H 0.08 0.62 7.86 -51.93 -0.41 0.21 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -32.34 358.11 -9.39 -41.73 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -7.45 Total: 12.98 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -3.26 Total: -6.02 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 1.27 Total: -57.44 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.32 Total: -12.86 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.34 -9.39 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326354196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.213 kcal (2) G-P(sol) polarization free energy of solvation -32.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds