Wall clock time and date at job start Fri Apr 10 2020 22:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99878 * 2 1 4 4 H 1.48498 * 109.47018 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46964 * 300.00582 * 3 2 1 6 6 H 1.48505 * 109.46877 * 60.00123 * 3 2 1 7 7 C 1.37877 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99515 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99826 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46838 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46897 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47270 * 304.99847 * 11 10 9 13 13 N 1.46904 * 109.46681 * 64.99774 * 11 10 9 14 14 C 1.50697 * 109.46857 * 184.99272 * 11 10 9 15 15 O 1.21287 * 120.00636 * 259.99931 * 14 11 10 16 16 N 1.34782 * 119.99398 * 80.00577 * 14 11 10 17 17 C 1.40160 * 119.99700 * 179.97438 * 16 14 11 18 18 C 1.40408 * 125.97454 * 0.02562 * 17 16 14 19 19 C 1.35234 * 107.86913 * 180.02562 * 18 17 16 20 20 C 1.50703 * 126.07016 * 180.02562 * 19 18 17 21 21 H 1.09003 * 110.33316 * 35.69497 * 20 19 18 22 22 C 1.54481 * 110.37079 * 273.44822 * 20 19 18 23 23 C 1.54509 * 104.05840 * 217.19040 * 22 20 19 24 24 C 1.54477 * 104.06896 * 359.97438 * 23 22 20 25 25 O 1.44423 * 110.37250 * 157.94764 * 20 19 18 26 26 N 1.34966 * 107.86019 * 359.97438 * 19 18 17 27 27 H 0.97006 * 125.97615 * 180.26244 * 26 19 18 28 28 N 1.31213 * 125.97158 * 180.02562 * 17 16 14 29 29 H 0.97007 * 120.00178 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47616 * 60.00029 * 9 7 2 31 31 H 1.09004 * 109.46958 * 299.99542 * 9 7 2 32 32 H 1.08989 * 109.47340 * 59.99819 * 10 9 7 33 33 H 1.09004 * 109.46725 * 299.99382 * 10 9 7 34 34 H 1.00897 * 110.99953 * 296.04101 * 13 11 10 35 35 H 1.00897 * 111.00514 * 60.00440 * 13 11 10 36 36 H 0.97000 * 120.00438 * 359.97438 * 16 14 11 37 37 H 1.08001 * 126.06737 * 359.97302 * 18 17 16 38 38 H 1.08996 * 110.50743 * 335.82993 * 22 20 19 39 39 H 1.08999 * 110.51013 * 98.54427 * 22 20 19 40 40 H 1.09005 * 110.51226 * 118.64666 * 23 22 20 41 41 H 1.09002 * 110.50782 * 241.35422 * 23 22 20 42 42 H 1.08994 * 110.37316 * 142.80871 * 24 23 22 43 43 H 1.08993 * 110.37090 * 265.04280 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 1 0.7885 -5.0068 0.8421 13 7 0.7282 -5.1187 -1.2549 14 6 2.4551 -6.1297 0.1238 15 8 2.7866 -6.7536 -0.8621 16 7 2.9584 -6.4585 1.3301 17 6 3.8645 -7.5216 1.4453 18 6 4.3323 -8.3243 0.3925 19 6 5.1871 -9.2341 0.9126 20 6 5.9265 -10.2982 0.1432 21 1 6.2136 -9.9244 -0.8396 22 6 5.0534 -11.5648 0.0027 23 6 6.0592 -12.7304 0.1331 24 6 7.4211 -12.0302 0.3362 25 8 7.0927 -10.7305 0.8771 26 7 5.2613 -9.0191 2.2430 27 1 5.8027 -9.5212 2.8721 28 7 4.4240 -7.9405 2.5557 29 1 -0.4851 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6248 -2.5570 0.8898 32 1 2.8720 -3.6043 0.8893 33 1 2.8719 -3.6042 -0.8906 34 1 0.0233 -4.4008 -1.3310 35 1 1.3476 -5.1033 -2.0511 36 1 2.6935 -5.9594 2.1186 37 1 4.0575 -8.2322 -0.6479 38 1 4.3127 -11.6085 0.8011 39 1 4.5671 -11.5872 -0.9725 40 1 5.8157 -13.3504 0.9959 41 1 6.0702 -13.3291 -0.7778 42 1 8.0346 -12.5908 1.0414 43 1 7.9396 -11.9251 -0.6167 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326354196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:07:20 Heat of formation + Delta-G solvation = -38.570554 kcal Electronic energy + Delta-G solvation = -24716.544531 eV Core-core repulsion = 20989.900674 eV Total energy + Delta-G solvation = -3726.643857 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.63994 -40.99442 -40.07984 -37.18577 -36.00867 -34.84251 -33.27898 -32.45897 -31.68176 -31.44861 -28.95048 -28.26250 -25.97989 -24.46570 -23.14897 -22.50663 -21.81784 -21.74906 -20.91250 -18.99772 -18.74979 -18.11115 -17.60389 -17.28565 -16.67034 -16.46875 -16.39402 -16.03249 -15.88533 -15.57053 -15.48485 -14.74781 -14.74393 -14.65461 -14.45125 -14.02297 -13.80212 -13.47023 -12.96545 -12.84168 -12.74852 -12.68702 -12.51048 -12.30042 -12.07520 -11.91533 -11.79292 -11.68383 -11.56959 -11.27279 -10.95235 -10.79187 -10.55060 -9.85717 -9.67231 -9.49449 -8.20654 -6.30150 0.59178 1.20165 1.27258 1.39012 1.41047 1.52497 2.00595 2.24152 2.40779 2.69046 3.13289 3.41210 3.60948 3.68868 3.73415 3.91049 3.99436 4.10017 4.11040 4.21647 4.25833 4.34834 4.53907 4.62476 4.66107 4.75478 4.83376 4.85609 4.96863 5.05423 5.06660 5.10977 5.12865 5.48976 5.63727 5.67897 5.71935 5.82481 5.92820 6.12333 6.23037 6.35627 6.50345 6.70625 6.85532 6.99858 7.38758 8.90127 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.028398 B = 0.002334 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.736298 B =11993.912815 C =12355.716701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.005 3.995 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.029 3.971 10 C -0.124 4.124 11 C 0.090 3.910 12 H 0.117 0.883 13 N -0.827 5.827 14 C 0.538 3.462 15 O -0.530 6.530 16 N -0.630 5.630 17 C 0.292 3.708 18 C -0.281 4.281 19 C 0.115 3.885 20 C 0.139 3.861 21 H 0.107 0.893 22 C -0.143 4.143 23 C -0.148 4.148 24 C 0.039 3.961 25 O -0.393 6.393 26 N -0.445 5.445 27 H 0.453 0.547 28 N -0.337 5.337 29 H 0.264 0.736 30 H 0.007 0.993 31 H 0.004 0.996 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.357 0.643 35 H 0.347 0.653 36 H 0.427 0.573 37 H 0.163 0.837 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.925 -26.158 1.330 28.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.164 4.164 11 C -0.025 4.025 12 H 0.135 0.865 13 N -0.359 5.359 14 C 0.325 3.675 15 O -0.403 6.403 16 N -0.280 5.280 17 C 0.037 3.963 18 C -0.312 4.312 19 C -0.016 4.016 20 C 0.080 3.920 21 H 0.125 0.875 22 C -0.181 4.181 23 C -0.186 4.186 24 C -0.037 4.037 25 O -0.312 6.312 26 N -0.157 5.157 27 H 0.301 0.699 28 N -0.169 5.169 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.022 0.978 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.173 0.827 35 H 0.160 0.840 36 H 0.265 0.735 37 H 0.181 0.819 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.127 0.873 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.922 -26.861 2.266 29.476 hybrid contribution 0.474 2.033 -0.342 2.115 sum 12.396 -24.829 1.924 27.818 Atomic orbital electron populations 1.70058 1.07364 1.27649 1.51455 1.25839 0.95744 1.02878 0.94881 0.85515 0.78986 0.79473 0.77770 1.19170 1.20478 1.20410 1.21645 0.93326 0.92513 1.50615 0.92840 1.18982 0.94005 0.91742 0.96048 1.22182 0.98914 0.93556 1.01727 1.21326 0.94334 0.90066 0.96773 0.86483 1.58741 1.18331 1.55856 1.03013 1.20979 0.80601 0.84332 0.81548 1.90556 1.59287 1.52923 1.37581 1.42717 1.42552 1.30931 1.11771 1.19321 0.93183 0.91104 0.92679 1.21471 1.07531 1.00655 1.01541 1.21030 0.97943 0.97541 0.85117 1.21640 0.85049 0.91645 0.93716 0.87529 1.22975 0.98482 0.92370 1.04295 1.22965 0.93529 0.97621 1.04453 1.23711 0.97382 0.82141 1.00482 1.89121 1.45403 1.35893 1.60815 1.45737 1.36854 1.26332 1.06783 0.69927 1.77306 1.13501 1.06029 1.20032 0.92753 0.97449 0.97753 0.91709 0.93176 0.82747 0.83969 0.73505 0.81914 0.91332 0.88400 0.89922 0.88196 0.87300 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.83 13.29 21.45 0.28 -53.55 16 2 C 0.01 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.54 -29.58 9.11 25.60 0.23 -29.35 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.03 1.41 4.74 29.85 0.14 1.55 16 10 C -0.12 -4.69 4.78 30.60 0.15 -4.54 16 11 C 0.09 2.89 3.21 44.17 0.14 3.03 16 12 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 13 N -0.83 -26.58 8.94 -171.79 -1.54 -28.12 16 14 C 0.54 17.25 7.05 87.66 0.62 17.86 16 15 O -0.53 -19.08 13.38 -3.05 -0.04 -19.12 16 16 N -0.63 -18.10 5.45 -307.51 -1.68 -19.78 16 17 C 0.29 8.89 8.11 133.33 1.08 9.97 16 18 C -0.28 -8.11 9.52 22.11 0.21 -7.90 16 19 C 0.11 2.65 6.11 41.38 0.25 2.91 16 20 C 0.14 2.27 3.76 30.35 0.11 2.39 16 21 H 0.11 1.59 8.14 -2.39 -0.02 1.58 16 22 C -0.14 -1.72 6.62 31.61 0.21 -1.51 16 23 C -0.15 -1.08 7.09 31.61 0.22 -0.85 16 24 C 0.04 0.34 7.63 72.48 0.55 0.89 16 25 O -0.39 -6.30 11.14 -148.98 -1.66 -7.96 16 26 N -0.45 -10.37 7.24 -48.04 -0.35 -10.71 16 27 H 0.45 8.14 8.84 -213.33 -1.89 6.26 16 28 N -0.34 -9.70 12.72 -54.45 -0.69 -10.39 16 29 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 30 H 0.01 0.36 6.87 -2.39 -0.02 0.34 16 31 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.36 11.63 7.55 -89.70 -0.68 10.95 16 35 H 0.35 11.21 8.58 -89.70 -0.77 10.44 16 36 H 0.43 10.38 8.82 -92.71 -0.82 9.56 16 37 H 0.16 5.05 5.92 -2.91 -0.02 5.04 16 38 H 0.07 0.98 7.86 -2.39 -0.02 0.96 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -68.48 358.11 -2.32 -70.80 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: -3.07 Total: 38.14 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 4.39 Total: -4.81 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -3.97 Total: -122.54 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -1.70 Total: -27.08 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -68.48 -2.32 -70.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326354196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.234 kcal (2) G-P(sol) polarization free energy of solvation -68.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds