Wall clock time and date at job start Fri Apr 10 2020 22:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00045 * 2 1 4 4 C 1.38774 * 120.02717 * 180.02562 * 3 2 1 5 5 C 1.38175 * 120.05516 * 180.02562 * 4 3 2 6 6 C 1.50697 * 119.94409 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47466 * 89.99878 * 6 5 4 8 8 N 1.46505 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21584 * 120.00541 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99489 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99511 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46708 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00462 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00032 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00203 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00175 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47108 * 60.00262 * 17 15 13 19 19 H 1.48505 * 109.47276 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47359 * 299.99971 * 17 15 13 21 21 C 1.38171 * 120.10863 * 0.23060 * 5 4 3 22 22 C 1.38778 * 120.05387 * 359.49774 * 21 5 4 23 23 O 1.35902 * 120.02416 * 180.27753 * 22 21 5 24 24 C 1.42904 * 116.99481 * 180.25408 * 23 22 21 25 25 C 1.38630 * 120.02617 * 0.02851 * 3 2 1 26 26 H 1.09002 * 109.47429 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47017 * 299.99756 * 1 2 3 28 28 H 1.09004 * 109.47383 * 59.99378 * 1 2 3 29 29 H 1.08004 * 119.97018 * 0.02654 * 4 3 2 30 30 H 1.09002 * 109.47120 * 329.99631 * 6 5 4 31 31 H 1.08998 * 109.46862 * 210.00433 * 6 5 4 32 32 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 33 33 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 34 34 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 35 35 H 0.97003 * 120.00377 * 0.02562 * 11 9 8 36 36 H 1.08994 * 109.47121 * 299.99693 * 12 11 9 37 37 H 1.08994 * 109.47503 * 60.00345 * 12 11 9 38 38 H 0.96994 * 120.00630 * 180.02562 * 16 15 13 39 39 H 1.08003 * 119.97212 * 179.72166 * 21 5 4 40 40 H 1.08994 * 109.47438 * 59.99222 * 24 23 22 41 41 H 1.09001 * 109.46835 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.46553 * 299.98809 * 24 23 22 43 43 H 1.07992 * 120.05887 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4318 1.2841 -0.0005 5 6 4.0597 2.5150 0.0000 6 6 5.5647 2.5916 0.0000 7 6 6.0741 2.6182 -1.4424 8 7 7.5372 2.6933 -1.4424 9 6 8.2102 2.7277 -2.6095 10 8 7.6031 2.6968 -3.6625 11 7 9.5562 2.7963 -2.6095 12 6 10.2877 2.8342 -3.8782 13 6 11.7675 2.9088 -3.6028 14 1 12.1271 2.9267 -2.5845 15 6 12.6624 2.9543 -4.6507 16 7 12.2246 2.9320 -5.8907 17 14 14.4965 3.0476 -4.3093 18 1 14.9164 1.8548 -3.5307 19 1 15.2382 3.0846 -5.5953 20 1 14.7933 4.2767 -3.5306 21 6 3.3100 3.6755 0.0059 22 6 1.9238 3.6076 0.0007 23 8 1.1870 4.7495 0.0008 24 6 -0.2346 4.6042 0.0010 25 6 1.2915 2.3738 0.0006 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 4.0200 0.3783 -0.0014 30 1 5.9729 1.7210 0.5135 31 1 5.8823 3.4986 0.5143 32 1 5.6660 3.4887 -1.9559 33 1 5.7565 1.7110 -1.9566 34 1 8.0215 2.7176 -0.6023 35 1 10.0406 2.8205 -1.7694 36 1 10.0701 1.9323 -4.4502 37 1 9.9795 3.7099 -4.4494 38 1 12.8541 2.9637 -6.6279 39 1 3.8031 4.6364 0.0108 40 1 -0.5437 4.0560 0.8909 41 1 -0.7005 5.5896 0.0015 42 1 -0.5438 4.0562 -0.8891 43 1 0.2130 2.3189 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351141373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:05 Heat of formation + Delta-G solvation = -88.780304 kcal Electronic energy + Delta-G solvation = -23997.663055 eV Core-core repulsion = 20236.549189 eV Total energy + Delta-G solvation = -3761.113867 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87324 -39.14447 -39.13760 -37.55379 -34.96800 -33.96133 -32.42311 -31.82504 -30.61565 -28.90827 -28.04348 -26.96153 -26.73879 -23.65469 -22.71900 -22.20291 -21.09282 -20.10724 -18.69417 -17.82939 -17.34056 -16.41750 -16.35037 -16.29049 -16.04069 -15.84347 -15.65552 -15.07624 -15.07579 -14.64062 -13.98392 -13.85484 -13.69152 -13.29809 -13.02874 -12.99272 -12.57414 -12.18946 -12.05537 -11.97140 -11.89155 -11.89076 -11.52860 -11.52292 -11.20600 -10.93538 -10.81980 -10.69769 -10.25796 -9.35504 -9.33270 -8.87017 -8.71903 -8.61483 -8.26641 -7.69052 -6.10513 -4.17028 0.99160 1.21615 2.85534 2.91845 3.29199 3.31535 3.34343 3.37175 3.55489 4.03612 4.36026 4.42477 4.52747 4.62010 4.71445 4.73477 4.78699 4.88449 4.89753 4.94298 5.03530 5.05119 5.07145 5.18744 5.25218 5.28610 5.50313 5.51995 5.92915 5.95545 5.96556 6.10407 6.32338 6.35772 6.82697 6.92583 7.16670 7.18937 7.57846 7.61251 7.63388 7.97066 8.10324 8.81966 9.01445 9.39809 9.54284 10.99711 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.027641 B = 0.002011 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.727350 B =13918.696965 C =14331.100381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.166 3.834 4 C -0.180 4.180 5 C 0.001 3.999 6 C -0.092 4.092 7 C 0.147 3.853 8 N -0.759 5.759 9 C 0.692 3.308 10 O -0.601 6.601 11 N -0.730 5.730 12 C 0.267 3.733 13 C -0.542 4.542 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.905 3.095 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.180 4.180 22 C 0.166 3.834 23 O -0.313 6.313 24 C 0.027 3.973 25 C -0.301 4.301 26 H 0.101 0.899 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.135 0.865 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.391 0.609 35 H 0.386 0.614 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.266 0.734 39 H 0.135 0.865 40 H 0.054 0.946 41 H 0.101 0.899 42 H 0.055 0.945 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.940 -1.326 17.592 31.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.120 3.880 4 C -0.199 4.199 5 C 0.000 4.000 6 C -0.130 4.130 7 C 0.022 3.978 8 N -0.417 5.417 9 C 0.392 3.608 10 O -0.480 6.480 11 N -0.383 5.383 12 C 0.146 3.854 13 C -0.580 4.580 14 H 0.080 0.920 15 C -0.141 4.141 16 N -0.523 5.523 17 Si 0.732 3.268 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.199 4.199 22 C 0.120 3.880 23 O -0.226 6.226 24 C -0.068 4.068 25 C -0.320 4.320 26 H 0.119 0.881 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.152 0.848 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.224 0.776 35 H 0.218 0.782 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.152 0.848 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.073 0.927 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -26.281 -1.342 16.345 30.978 hybrid contribution 0.794 0.039 0.851 1.165 sum -25.487 -1.303 17.196 30.773 Atomic orbital electron populations 1.23065 0.78438 1.04071 1.01225 1.86104 1.21366 1.26794 1.88363 1.18684 0.92007 0.83526 0.93784 1.20245 0.91121 0.98439 1.10103 1.19199 0.94979 0.91339 0.94461 1.20828 0.90327 1.04138 0.97673 1.20980 0.79556 1.02586 0.94644 1.45132 1.06557 1.82395 1.07566 1.16142 0.82681 0.78412 0.83560 1.90875 1.68201 1.58587 1.30315 1.45711 1.03526 1.77171 1.11844 1.18966 0.89536 0.97570 0.79354 1.21200 0.90643 1.52944 0.93223 0.91997 1.24952 0.99467 0.94846 0.94830 1.69970 1.35104 1.48898 0.98341 0.86468 0.84175 0.78640 0.77545 1.20118 1.21117 1.20111 1.20246 0.90232 0.99324 1.10108 1.18687 0.91134 0.84399 0.93781 1.86107 1.19122 1.29034 1.88365 1.23064 0.78547 1.03964 1.01225 1.21216 1.00367 0.92067 1.18369 0.88054 0.92767 0.92656 0.84751 0.89701 0.89700 0.91672 0.91669 0.77568 0.78187 0.95768 0.95769 0.92437 0.84752 0.92771 0.88056 0.92650 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.09 10.50 -19.42 -0.20 -3.30 16 3 C 0.17 1.75 6.68 -39.24 -0.26 1.49 16 4 C -0.18 -1.94 9.64 -39.41 -0.38 -2.32 16 5 C 0.00 0.01 5.13 -104.67 -0.54 -0.53 16 6 C -0.09 -0.87 5.46 -27.89 -0.15 -1.02 16 7 C 0.15 1.98 5.66 -4.04 -0.02 1.95 16 8 N -0.76 -11.49 5.56 -65.22 -0.36 -11.85 16 9 C 0.69 14.77 8.57 -86.92 -0.74 14.02 16 10 O -0.60 -15.63 16.34 5.29 0.09 -15.54 16 11 N -0.73 -16.03 5.55 -66.42 -0.37 -16.40 16 12 C 0.27 7.32 5.43 -5.19 -0.03 7.29 16 13 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 14 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 17 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.18 -1.94 9.63 -39.41 -0.38 -2.32 16 22 C 0.17 1.75 6.68 -39.24 -0.26 1.49 16 23 O -0.31 -3.09 10.50 -19.43 -0.20 -3.30 16 24 C 0.03 0.15 9.81 101.05 0.99 1.15 16 25 C -0.30 -2.87 8.02 -39.29 -0.32 -3.19 16 26 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.24 7.66 -51.93 -0.40 -0.15 16 28 H 0.05 0.27 7.66 -51.93 -0.40 -0.12 16 29 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 30 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.39 4.55 8.49 -40.82 -0.35 4.21 16 35 H 0.39 7.17 8.34 -40.82 -0.34 6.83 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 40 H 0.05 0.24 7.66 -51.93 -0.40 -0.15 16 41 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.27 7.66 -51.93 -0.40 -0.12 16 43 H 0.13 0.93 4.54 -52.49 -0.24 0.69 16 LS Contribution 366.89 15.07 5.53 5.53 Total: -1.00 -35.95 366.89 -7.60 -43.55 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.27 Total: 5.47 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -1.52 Total: 5.54 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.00 Total: -54.05 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.32 Total: -22.13 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.95 -7.60 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351141373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.231 kcal (2) G-P(sol) polarization free energy of solvation -35.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds