Wall clock time and date at job start Fri Apr 10 2020 22:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00045 * 2 1 4 4 C 1.38774 * 120.02717 * 180.02562 * 3 2 1 5 5 C 1.38175 * 120.05516 * 180.02562 * 4 3 2 6 6 C 1.50697 * 119.94409 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47466 * 89.99878 * 6 5 4 8 8 N 1.46505 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21584 * 120.00541 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99489 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99511 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46708 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00462 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00032 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00203 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00175 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47108 * 60.00262 * 17 15 13 19 19 H 1.48505 * 109.47276 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47359 * 299.99971 * 17 15 13 21 21 C 1.38171 * 120.10863 * 0.23060 * 5 4 3 22 22 C 1.38778 * 120.05387 * 359.49774 * 21 5 4 23 23 O 1.35902 * 120.02416 * 180.27753 * 22 21 5 24 24 C 1.42904 * 116.99481 * 180.25408 * 23 22 21 25 25 C 1.38630 * 120.02617 * 0.02851 * 3 2 1 26 26 H 1.09002 * 109.47429 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47017 * 299.99756 * 1 2 3 28 28 H 1.09004 * 109.47383 * 59.99378 * 1 2 3 29 29 H 1.08004 * 119.97018 * 0.02654 * 4 3 2 30 30 H 1.09002 * 109.47120 * 329.99631 * 6 5 4 31 31 H 1.08998 * 109.46862 * 210.00433 * 6 5 4 32 32 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 33 33 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 34 34 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 35 35 H 0.97003 * 120.00377 * 0.02562 * 11 9 8 36 36 H 1.08994 * 109.47121 * 299.99693 * 12 11 9 37 37 H 1.08994 * 109.47503 * 60.00345 * 12 11 9 38 38 H 0.96994 * 120.00630 * 180.02562 * 16 15 13 39 39 H 1.08003 * 119.97212 * 179.72166 * 21 5 4 40 40 H 1.08994 * 109.47438 * 59.99222 * 24 23 22 41 41 H 1.09001 * 109.46835 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.46553 * 299.98809 * 24 23 22 43 43 H 1.07992 * 120.05887 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4318 1.2841 -0.0005 5 6 4.0597 2.5150 0.0000 6 6 5.5647 2.5916 0.0000 7 6 6.0741 2.6182 -1.4424 8 7 7.5372 2.6933 -1.4424 9 6 8.2102 2.7277 -2.6095 10 8 7.6031 2.6968 -3.6625 11 7 9.5562 2.7963 -2.6095 12 6 10.2877 2.8342 -3.8782 13 6 11.7675 2.9088 -3.6028 14 1 12.1271 2.9267 -2.5845 15 6 12.6624 2.9543 -4.6507 16 7 12.2246 2.9320 -5.8907 17 14 14.4965 3.0476 -4.3093 18 1 14.9164 1.8548 -3.5307 19 1 15.2382 3.0846 -5.5953 20 1 14.7933 4.2767 -3.5306 21 6 3.3100 3.6755 0.0059 22 6 1.9238 3.6076 0.0007 23 8 1.1870 4.7495 0.0008 24 6 -0.2346 4.6042 0.0010 25 6 1.2915 2.3738 0.0006 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 4.0200 0.3783 -0.0014 30 1 5.9729 1.7210 0.5135 31 1 5.8823 3.4986 0.5143 32 1 5.6660 3.4887 -1.9559 33 1 5.7565 1.7110 -1.9566 34 1 8.0215 2.7176 -0.6023 35 1 10.0406 2.8205 -1.7694 36 1 10.0701 1.9323 -4.4502 37 1 9.9795 3.7099 -4.4494 38 1 12.8541 2.9637 -6.6279 39 1 3.8031 4.6364 0.0108 40 1 -0.5437 4.0560 0.8909 41 1 -0.7005 5.5896 0.0015 42 1 -0.5438 4.0562 -0.8891 43 1 0.2130 2.3189 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351141373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:04 Heat of formation + Delta-G solvation = -115.932900 kcal Electronic energy + Delta-G solvation = -23998.840480 eV Core-core repulsion = 20236.549189 eV Total energy + Delta-G solvation = -3762.291291 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58819 -40.82837 -39.79616 -38.37642 -36.39510 -35.82972 -34.35451 -32.98631 -31.29781 -29.97176 -29.04089 -28.24270 -27.48905 -25.09234 -23.89185 -23.45512 -22.01635 -21.68555 -19.90353 -19.12561 -18.00359 -17.97773 -17.38855 -17.17617 -17.02604 -16.92260 -16.52552 -16.45283 -16.41438 -15.67498 -15.35459 -15.17158 -15.00976 -14.37616 -14.24042 -13.99863 -13.80935 -13.75954 -13.17804 -12.95831 -12.88096 -12.78405 -12.66296 -12.49133 -12.28531 -12.21013 -12.19829 -12.09738 -11.47575 -11.40158 -11.22952 -10.77051 -10.25164 -9.62213 -9.55589 -9.02230 -8.25691 -6.42338 0.22198 0.43883 1.45216 1.50071 1.57929 1.90350 2.27629 2.27702 2.32765 2.42233 2.66774 3.08921 3.53925 3.78573 3.91284 4.07534 4.08244 4.09437 4.19255 4.30312 4.33164 4.35274 4.37243 4.45067 4.59976 4.64904 4.70494 4.70670 5.00761 5.01881 5.14699 5.20042 5.23721 5.29706 5.51233 5.54062 5.56532 5.61342 5.71315 5.87730 6.17987 6.31584 6.48925 6.69471 7.26985 7.36559 7.76157 8.86499 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.027641 B = 0.002011 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.727350 B =13918.696965 C =14331.100381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.155 3.845 4 C -0.196 4.196 5 C -0.004 4.004 6 C -0.076 4.076 7 C 0.148 3.852 8 N -0.730 5.730 9 C 0.689 3.311 10 O -0.652 6.652 11 N -0.723 5.723 12 C 0.285 3.715 13 C -0.555 4.555 14 H 0.085 0.915 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.988 3.012 18 H -0.262 1.262 19 H -0.286 1.286 20 H -0.262 1.262 21 C -0.196 4.196 22 C 0.155 3.845 23 O -0.332 6.332 24 C 0.017 3.983 25 C -0.299 4.299 26 H 0.120 0.880 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.137 0.863 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.414 0.586 35 H 0.406 0.594 36 H -0.016 1.016 37 H -0.016 1.016 38 H 0.269 0.731 39 H 0.137 0.863 40 H 0.067 0.933 41 H 0.120 0.880 42 H 0.062 0.938 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.872 -1.322 20.144 32.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.109 3.891 4 C -0.215 4.215 5 C -0.005 4.005 6 C -0.114 4.114 7 C 0.023 3.977 8 N -0.388 5.388 9 C 0.389 3.611 10 O -0.535 6.535 11 N -0.377 5.377 12 C 0.161 3.839 13 C -0.593 4.593 14 H 0.103 0.897 15 C -0.198 4.198 16 N -0.570 5.570 17 Si 0.811 3.189 18 H -0.186 1.186 19 H -0.212 1.212 20 H -0.186 1.186 21 C -0.215 4.215 22 C 0.109 3.891 23 O -0.245 6.245 24 C -0.078 4.078 25 C -0.318 4.318 26 H 0.138 0.862 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.251 0.749 35 H 0.241 0.759 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.077 0.923 39 H 0.155 0.845 40 H 0.086 0.914 41 H 0.138 0.862 42 H 0.081 0.919 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -26.246 -1.340 19.004 32.432 hybrid contribution 0.565 0.027 0.062 0.569 sum -25.682 -1.313 19.066 32.012 Atomic orbital electron populations 1.23372 0.76416 1.05753 1.02213 1.86082 1.23566 1.26589 1.88273 1.18854 0.92235 0.84176 0.93787 1.20434 0.91708 0.98721 1.10606 1.19237 0.95290 0.91209 0.94718 1.20726 0.89753 1.06102 0.94805 1.21072 0.77994 1.01190 0.97412 1.44847 1.07276 1.80165 1.06511 1.16343 0.82356 0.77964 0.84444 1.90842 1.69111 1.60683 1.32866 1.45283 1.03919 1.77508 1.10956 1.18402 0.90711 0.93874 0.80876 1.21584 0.90462 1.52746 0.94482 0.89672 1.26102 1.05397 0.93945 0.94355 1.70143 1.37249 1.49910 0.99700 0.85166 0.76768 0.79491 0.77504 1.18625 1.21176 1.18611 1.20435 0.90816 0.99605 1.10605 1.18859 0.91375 0.85039 0.93785 1.86085 1.21132 1.29019 1.88275 1.23371 0.76543 1.05627 1.02213 1.21419 1.01556 0.91351 1.17459 0.86182 0.91411 0.91954 0.84471 0.87729 0.87727 0.93174 0.93166 0.74916 0.75851 0.99765 0.99761 0.92268 0.84464 0.91414 0.86184 0.91948 0.82732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -6.25 10.50 -92.39 -0.97 -7.22 16 3 C 0.16 3.18 6.68 22.49 0.15 3.33 16 4 C -0.20 -4.12 9.64 22.38 0.22 -3.91 16 5 C 0.00 -0.07 5.13 -19.90 -0.10 -0.17 16 6 C -0.08 -1.31 5.46 29.85 0.16 -1.15 16 7 C 0.15 3.90 5.66 86.38 0.49 4.39 16 8 N -0.73 -21.34 5.56 -478.53 -2.66 -24.00 16 9 C 0.69 29.74 8.57 179.05 1.53 31.28 16 10 O -0.65 -35.27 16.34 -3.98 -0.07 -35.34 16 11 N -0.72 -31.90 5.55 -482.30 -2.68 -34.58 16 12 C 0.28 16.18 5.43 85.63 0.46 16.65 16 13 C -0.55 -30.68 9.28 25.60 0.24 -30.45 16 14 H 0.09 4.21 7.60 -2.91 -0.02 4.19 16 15 C 0.00 0.08 5.46 84.65 0.46 0.55 16 16 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 17 Si 0.99 42.72 29.54 68.60 2.03 44.75 16 18 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 19 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 20 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 21 C -0.20 -4.12 9.63 22.38 0.22 -3.90 16 22 C 0.16 3.18 6.68 22.49 0.15 3.33 16 23 O -0.33 -6.25 10.50 -92.44 -0.97 -7.22 16 24 C 0.02 0.16 9.81 113.37 1.11 1.27 16 25 C -0.30 -5.37 8.02 22.46 0.18 -5.19 16 26 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 28 H 0.06 0.51 7.66 -2.38 -0.02 0.49 16 29 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.10 1.42 8.08 -2.39 -0.02 1.40 16 31 H 0.10 1.42 8.08 -2.39 -0.02 1.40 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.41 8.57 8.49 -92.71 -0.79 7.78 16 35 H 0.41 14.50 8.34 -92.71 -0.77 13.73 16 36 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 37 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 38 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 40 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 41 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.06 0.51 7.66 -2.39 -0.02 0.49 16 43 H 0.16 1.89 4.54 -2.91 -0.01 1.88 16 Total: -1.00 -81.12 366.89 0.83 -80.29 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -0.52 Total: 22.87 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 6.38 Total: 17.29 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -5.05 Total: -115.42 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -2.01 Total: -49.77 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -81.12 0.83 -80.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351141373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.642 kcal (2) G-P(sol) polarization free energy of solvation -81.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds