Wall clock time and date at job start Fri Apr 10 2020 22:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35901 * 116.99626 * 2 1 4 4 C 1.38417 * 120.07545 * 359.97333 * 3 2 1 5 5 C 1.38763 * 119.98448 * 180.02562 * 4 3 2 6 6 O 1.35871 * 119.94241 * 180.02562 * 5 4 3 7 7 C 1.42896 * 116.99821 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.46883 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47383 * 63.71260 * 8 7 6 10 10 C 1.46904 * 111.00213 * 66.70780 * 9 8 7 11 11 C 1.46899 * 111.00180 * 190.66660 * 9 8 7 12 12 C 1.39017 * 120.11539 * 0.02562 * 5 4 3 13 13 C 1.37959 * 120.14710 * 359.74082 * 12 5 4 14 14 C 1.39063 * 120.01262 * 0.51031 * 13 12 5 15 15 N 1.39456 * 120.05358 * 179.77007 * 14 13 12 16 16 C 1.34772 * 120.00621 * 34.09834 * 15 14 13 17 17 O 1.21814 * 119.99550 * 355.14467 * 16 15 14 18 18 C 1.41597 * 120.00541 * 175.14533 * 16 15 14 19 19 H 1.08001 * 119.99538 * 359.97438 * 18 16 15 20 20 C 1.40147 * 120.00240 * 179.72568 * 18 16 15 21 21 N 1.30621 * 120.00043 * 0.27506 * 20 18 16 22 22 Si 1.86799 * 119.99889 * 180.27121 * 20 18 16 23 23 H 1.48497 * 109.47201 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47098 * 119.99915 * 22 20 18 25 25 H 1.48500 * 109.47457 * 239.99874 * 22 20 18 26 26 H 1.09002 * 109.46976 * 300.00255 * 1 2 3 27 27 H 1.09002 * 109.46737 * 60.00255 * 1 2 3 28 28 H 1.08996 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.08006 * 120.00714 * 0.02562 * 4 3 2 30 30 H 1.09009 * 109.47098 * 299.99641 * 7 6 5 31 31 H 1.08999 * 109.47700 * 59.99866 * 7 6 5 32 32 H 1.09005 * 109.46942 * 183.70969 * 8 7 6 33 33 H 1.08992 * 109.47336 * 303.70778 * 8 7 6 34 34 H 1.08999 * 109.47074 * 60.00054 * 10 9 8 35 35 H 1.09000 * 109.47186 * 180.02562 * 10 9 8 36 36 H 1.08998 * 109.47284 * 300.00319 * 10 9 8 37 37 H 1.08992 * 109.47109 * 64.93571 * 11 9 8 38 38 H 1.09004 * 109.46973 * 184.93744 * 11 9 8 39 39 H 1.09001 * 109.46969 * 304.93152 * 11 9 8 40 40 H 1.08000 * 119.92532 * 179.97438 * 12 5 4 41 41 H 1.07998 * 119.99310 * 180.25825 * 13 12 5 42 42 H 0.97002 * 119.99780 * 214.10443 * 15 14 13 43 43 H 0.97000 * 120.00114 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2935 2.3727 -0.0006 5 6 1.9254 3.6082 -0.0011 6 8 1.1860 4.7481 -0.0011 7 6 1.9011 5.9852 -0.0023 8 6 0.9075 7.1486 -0.0015 9 7 0.1244 7.1230 1.2412 10 6 0.9745 7.4067 2.4051 11 6 -1.0038 8.0613 1.1719 12 6 3.3136 3.6816 -0.0016 13 6 4.0685 2.5269 0.0038 14 6 3.4413 1.2858 -0.0009 15 7 4.2036 0.1180 -0.0003 16 6 5.3788 0.0806 0.6583 17 8 5.8179 1.0909 1.1783 18 6 6.1032 -1.1329 0.7459 19 1 5.7137 -2.0286 0.2852 20 6 7.3281 -1.1703 1.4259 21 7 7.7989 -0.0870 1.9835 22 14 8.2873 -2.7695 1.5348 23 1 7.5439 -3.8419 0.8259 24 1 9.6198 -2.5914 0.9039 25 1 8.4611 -3.1464 2.9606 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 0.2149 2.3177 -0.0006 30 1 2.5285 6.0430 0.8873 31 1 2.5272 6.0422 -0.8927 32 1 1.4513 8.0909 -0.0688 33 1 0.2369 7.0543 -0.8555 34 1 1.4234 8.3939 2.2952 35 1 0.3698 7.3811 3.3116 36 1 1.7613 6.6554 2.4723 37 1 -1.7004 7.7355 0.3997 38 1 -1.5144 8.0871 2.1346 39 1 -0.6334 9.0576 0.9304 40 1 3.8022 4.6448 -0.0024 41 1 5.1468 2.5869 0.0076 42 1 3.8880 -0.6674 -0.4740 43 1 8.6465 -0.1130 2.4545 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362553660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:08 Heat of formation + Delta-G solvation = -70.600770 kcal Electronic energy + Delta-G solvation = -25215.101713 eV Core-core repulsion = 21454.776170 eV Total energy + Delta-G solvation = -3760.325543 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.09595 -38.87494 -37.72391 -37.33838 -35.52257 -33.15328 -32.25476 -30.60002 -29.49987 -28.43129 -27.79658 -27.00168 -25.87926 -24.55041 -22.18474 -21.98882 -20.64251 -19.78478 -18.33320 -17.50286 -16.42299 -16.20689 -16.14588 -15.80687 -15.44405 -15.24251 -15.12765 -15.02493 -14.54799 -14.04980 -13.83869 -13.40908 -13.05008 -12.78741 -12.65183 -12.59178 -12.38708 -12.22205 -11.93437 -11.77752 -11.72989 -11.48645 -11.37204 -11.08795 -11.08418 -10.99028 -10.58497 -10.47184 -10.24919 -10.12083 -9.03679 -8.60122 -8.53887 -8.04327 -7.56636 -6.57729 -6.29723 -4.80850 1.96845 2.09183 3.08309 3.17055 3.22016 3.40000 3.69764 3.74695 4.04285 4.28458 4.55552 4.74457 4.84375 4.84892 5.00753 5.12187 5.21061 5.27005 5.29683 5.33449 5.38628 5.41856 5.43352 5.57289 5.61343 5.62328 5.67351 5.78833 5.81082 5.92296 6.03769 6.32774 6.55109 6.76921 6.79113 6.86365 7.06614 7.22794 7.32010 7.70088 7.84338 8.00058 8.15502 8.39374 8.88340 9.43696 10.46455 10.69182 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.003078 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.773795 B = 9094.443997 C =10139.011438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.311 6.311 3 C 0.105 3.895 4 C -0.220 4.220 5 C 0.118 3.882 6 O -0.303 6.303 7 C 0.064 3.936 8 C 0.056 3.944 9 N -0.540 5.540 10 C 0.019 3.981 11 C 0.026 3.974 12 C -0.221 4.221 13 C -0.062 4.062 14 C 0.135 3.865 15 N -0.693 5.693 16 C 0.547 3.453 17 O -0.573 6.573 18 C -0.537 4.537 19 H 0.070 0.930 20 C 0.088 3.912 21 N -0.749 5.749 22 Si 0.911 3.089 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.275 1.275 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.128 0.872 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.024 0.976 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.023 0.977 40 H 0.120 0.880 41 H 0.154 0.846 42 H 0.394 0.606 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.364 11.037 -3.931 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.225 6.225 3 C 0.057 3.943 4 C -0.240 4.240 5 C 0.072 3.928 6 O -0.217 6.217 7 C -0.012 4.012 8 C -0.071 4.071 9 N -0.264 5.264 10 C -0.129 4.129 11 C -0.123 4.123 12 C -0.241 4.241 13 C -0.083 4.083 14 C 0.036 3.964 15 N -0.337 5.337 16 C 0.356 3.644 17 O -0.457 6.457 18 C -0.573 4.573 19 H 0.088 0.912 20 C -0.134 4.134 21 N -0.377 5.377 22 Si 0.735 3.265 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.146 0.854 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.041 0.959 40 H 0.138 0.862 41 H 0.172 0.828 42 H 0.227 0.773 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.152 11.134 -3.360 18.318 hybrid contribution 0.552 -0.104 -0.142 0.580 sum -13.600 11.030 -3.502 17.857 Atomic orbital electron populations 1.22954 0.79278 1.03183 1.01041 1.86060 1.20576 1.26529 1.89320 1.18617 0.90711 0.83808 1.01185 1.19950 0.99468 0.89312 1.15289 1.18536 0.89610 0.85592 0.99040 1.86044 1.34665 1.11822 1.89188 1.22740 0.94267 0.82736 1.01422 1.22195 0.96108 0.95541 0.93306 1.61914 1.10480 1.51273 1.02712 1.22485 0.97628 0.99383 0.93407 1.22380 0.93888 0.93275 1.02716 1.21029 0.92074 0.99198 1.11787 1.21220 1.01728 0.89139 0.96196 1.17282 0.86312 0.89171 1.03599 1.43791 1.23030 1.11469 1.55453 1.16981 0.78600 0.90515 0.78276 1.90610 1.68119 1.36288 1.50679 1.20045 1.05268 0.95796 1.36150 0.91184 1.25756 0.97148 0.97242 0.93270 1.70025 1.16607 1.27849 1.23215 0.86256 0.79496 0.82099 0.78605 1.18565 1.20009 1.20005 0.92952 0.93091 0.88788 0.85397 0.92021 0.91782 0.92881 0.89697 0.95743 0.91241 0.90856 0.91281 0.91380 0.95865 0.86235 0.82829 0.77337 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.38 16 2 O -0.31 -5.53 10.05 -19.43 -0.20 -5.73 16 3 C 0.10 2.05 6.71 -38.96 -0.26 1.79 16 4 C -0.22 -3.90 8.97 -39.32 -0.35 -4.25 16 5 C 0.12 2.09 6.69 -39.10 -0.26 1.83 16 6 O -0.30 -4.74 10.06 -19.33 -0.19 -4.93 16 7 C 0.06 0.78 4.79 37.16 0.18 0.96 16 8 C 0.06 0.56 5.34 -3.82 -0.02 0.54 16 9 N -0.54 -5.77 4.94 -251.26 -1.24 -7.01 16 10 C 0.02 0.19 9.33 60.07 0.56 0.75 16 11 C 0.03 0.21 9.60 60.06 0.58 0.79 16 12 C -0.22 -4.11 9.03 -39.40 -0.36 -4.46 16 13 C -0.06 -1.36 8.69 -39.38 -0.34 -1.71 16 14 C 0.14 3.04 6.34 -83.53 -0.53 2.51 16 15 N -0.69 -16.73 5.16 -12.31 -0.06 -16.80 16 16 C 0.55 15.62 7.41 -14.98 -0.11 15.51 16 17 O -0.57 -18.02 12.23 5.09 0.06 -17.96 16 18 C -0.54 -15.02 9.30 -37.59 -0.35 -15.37 16 19 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 20 C 0.09 2.41 5.50 -17.35 -0.10 2.32 16 21 N -0.75 -21.83 11.73 55.56 0.65 -21.18 16 22 Si 0.91 19.71 29.56 -169.99 -5.02 14.69 16 23 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 27 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.13 1.96 6.29 -52.48 -0.33 1.63 16 30 H 0.06 0.76 5.92 -51.92 -0.31 0.45 16 31 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 32 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 33 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 36 H 0.07 0.80 6.42 -51.93 -0.33 0.47 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.51 8.04 -51.93 -0.42 0.09 16 39 H 0.02 0.17 8.13 -51.93 -0.42 -0.26 16 40 H 0.12 1.92 6.28 -52.49 -0.33 1.59 16 41 H 0.15 3.80 6.13 -52.49 -0.32 3.48 16 42 H 0.39 8.56 8.51 -40.82 -0.35 8.21 16 43 H 0.27 7.09 8.29 -40.82 -0.34 6.76 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -34.33 356.07 -7.09 -41.42 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.08 Total: 9.57 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.37 Total: 2.57 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.65 Total: -44.99 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.33 Total: -28.62 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.33 -7.09 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362553660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.184 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds