Wall clock time and date at job start Fri Apr 10 2020 22:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35901 * 116.99626 * 2 1 4 4 C 1.38417 * 120.07545 * 359.97333 * 3 2 1 5 5 C 1.38763 * 119.98448 * 180.02562 * 4 3 2 6 6 O 1.35871 * 119.94241 * 180.02562 * 5 4 3 7 7 C 1.42896 * 116.99821 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.46883 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47383 * 63.71260 * 8 7 6 10 10 C 1.46904 * 111.00213 * 66.70780 * 9 8 7 11 11 C 1.46899 * 111.00180 * 190.66660 * 9 8 7 12 12 C 1.39017 * 120.11539 * 0.02562 * 5 4 3 13 13 C 1.37959 * 120.14710 * 359.74082 * 12 5 4 14 14 C 1.39063 * 120.01262 * 0.51031 * 13 12 5 15 15 N 1.39456 * 120.05358 * 179.77007 * 14 13 12 16 16 C 1.34772 * 120.00621 * 34.09834 * 15 14 13 17 17 O 1.21814 * 119.99550 * 355.14467 * 16 15 14 18 18 C 1.41597 * 120.00541 * 175.14533 * 16 15 14 19 19 H 1.08001 * 119.99538 * 359.97438 * 18 16 15 20 20 C 1.40147 * 120.00240 * 179.72568 * 18 16 15 21 21 N 1.30621 * 120.00043 * 0.27506 * 20 18 16 22 22 Si 1.86799 * 119.99889 * 180.27121 * 20 18 16 23 23 H 1.48497 * 109.47201 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47098 * 119.99915 * 22 20 18 25 25 H 1.48500 * 109.47457 * 239.99874 * 22 20 18 26 26 H 1.09002 * 109.46976 * 300.00255 * 1 2 3 27 27 H 1.09002 * 109.46737 * 60.00255 * 1 2 3 28 28 H 1.08996 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.08006 * 120.00714 * 0.02562 * 4 3 2 30 30 H 1.09009 * 109.47098 * 299.99641 * 7 6 5 31 31 H 1.08999 * 109.47700 * 59.99866 * 7 6 5 32 32 H 1.09005 * 109.46942 * 183.70969 * 8 7 6 33 33 H 1.08992 * 109.47336 * 303.70778 * 8 7 6 34 34 H 1.08999 * 109.47074 * 60.00054 * 10 9 8 35 35 H 1.09000 * 109.47186 * 180.02562 * 10 9 8 36 36 H 1.08998 * 109.47284 * 300.00319 * 10 9 8 37 37 H 1.08992 * 109.47109 * 64.93571 * 11 9 8 38 38 H 1.09004 * 109.46973 * 184.93744 * 11 9 8 39 39 H 1.09001 * 109.46969 * 304.93152 * 11 9 8 40 40 H 1.08000 * 119.92532 * 179.97438 * 12 5 4 41 41 H 1.07998 * 119.99310 * 180.25825 * 13 12 5 42 42 H 0.97002 * 119.99780 * 214.10443 * 15 14 13 43 43 H 0.97000 * 120.00114 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2935 2.3727 -0.0006 5 6 1.9254 3.6082 -0.0011 6 8 1.1860 4.7481 -0.0011 7 6 1.9011 5.9852 -0.0023 8 6 0.9075 7.1486 -0.0015 9 7 0.1244 7.1230 1.2412 10 6 0.9745 7.4067 2.4051 11 6 -1.0038 8.0613 1.1719 12 6 3.3136 3.6816 -0.0016 13 6 4.0685 2.5269 0.0038 14 6 3.4413 1.2858 -0.0009 15 7 4.2036 0.1180 -0.0003 16 6 5.3788 0.0806 0.6583 17 8 5.8179 1.0909 1.1783 18 6 6.1032 -1.1329 0.7459 19 1 5.7137 -2.0286 0.2852 20 6 7.3281 -1.1703 1.4259 21 7 7.7989 -0.0870 1.9835 22 14 8.2873 -2.7695 1.5348 23 1 7.5439 -3.8419 0.8259 24 1 9.6198 -2.5914 0.9039 25 1 8.4611 -3.1464 2.9606 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 0.2149 2.3177 -0.0006 30 1 2.5285 6.0430 0.8873 31 1 2.5272 6.0422 -0.8927 32 1 1.4513 8.0909 -0.0688 33 1 0.2369 7.0543 -0.8555 34 1 1.4234 8.3939 2.2952 35 1 0.3698 7.3811 3.3116 36 1 1.7613 6.6554 2.4723 37 1 -1.7004 7.7355 0.3997 38 1 -1.5144 8.0871 2.1346 39 1 -0.6334 9.0576 0.9304 40 1 3.8022 4.6448 -0.0024 41 1 5.1468 2.5869 0.0076 42 1 3.8880 -0.6674 -0.4740 43 1 8.6465 -0.1130 2.4545 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362553660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:07 Heat of formation + Delta-G solvation = -96.529716 kcal Electronic energy + Delta-G solvation = -25216.226077 eV Core-core repulsion = 21454.776170 eV Total energy + Delta-G solvation = -3761.449906 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.56969 -40.15954 -39.51960 -38.27506 -37.05359 -35.03506 -34.31799 -31.78629 -30.82175 -29.99786 -28.49531 -28.49218 -27.52238 -25.45975 -23.85581 -23.17987 -21.80257 -21.56149 -19.75790 -19.32495 -17.81664 -17.72014 -17.41306 -17.35984 -16.95765 -16.57682 -16.10313 -15.86957 -15.81620 -15.54096 -15.11723 -15.00926 -14.68423 -14.56617 -13.96848 -13.52807 -13.47987 -13.32934 -13.25841 -13.12453 -12.83935 -12.73703 -12.69291 -12.62041 -12.51094 -12.33924 -12.05090 -11.97152 -11.71295 -11.54826 -10.98634 -10.40492 -9.81092 -9.44633 -9.26780 -8.36993 -8.26023 -6.96860 0.43935 0.52552 1.39524 1.40241 1.58696 2.18165 2.22894 2.38549 2.47036 2.83001 3.00131 3.08756 3.67368 3.85939 3.97450 4.05738 4.12519 4.25416 4.29334 4.31312 4.42717 4.45892 4.47608 4.50596 4.63277 4.69481 4.75098 4.76243 4.79026 4.86183 4.99460 5.03384 5.03963 5.23832 5.33618 5.48983 5.60648 5.92937 6.04288 6.09565 6.19684 6.23260 6.45950 6.68609 6.76729 7.46261 8.42699 8.60906 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.003078 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.773795 B = 9094.443997 C =10139.011438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.118 3.882 4 C -0.219 4.219 5 C 0.135 3.865 6 O -0.303 6.303 7 C 0.054 3.946 8 C 0.061 3.939 9 N -0.564 5.564 10 C 0.020 3.980 11 C 0.027 3.973 12 C -0.223 4.223 13 C -0.079 4.079 14 C 0.089 3.911 15 N -0.689 5.689 16 C 0.532 3.468 17 O -0.615 6.615 18 C -0.566 4.566 19 H 0.086 0.914 20 C 0.032 3.968 21 N -0.801 5.801 22 Si 1.002 2.998 23 H -0.248 1.248 24 H -0.265 1.265 25 H -0.267 1.267 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.121 0.879 29 H 0.158 0.842 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.035 0.965 40 H 0.141 0.859 41 H 0.116 0.884 42 H 0.402 0.598 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.307 10.958 -4.391 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.243 6.243 3 C 0.070 3.930 4 C -0.239 4.239 5 C 0.088 3.912 6 O -0.217 6.217 7 C -0.021 4.021 8 C -0.067 4.067 9 N -0.289 5.289 10 C -0.128 4.128 11 C -0.121 4.121 12 C -0.242 4.242 13 C -0.101 4.101 14 C -0.008 4.008 15 N -0.333 5.333 16 C 0.341 3.659 17 O -0.503 6.503 18 C -0.601 4.601 19 H 0.104 0.896 20 C -0.186 4.186 21 N -0.429 5.429 22 Si 0.820 3.180 23 H -0.171 1.171 24 H -0.190 1.190 25 H -0.191 1.191 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.139 0.861 29 H 0.176 0.824 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.158 0.842 41 H 0.134 0.866 42 H 0.236 0.764 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.167 11.077 -3.850 19.972 hybrid contribution 0.950 0.073 -0.024 0.953 sum -15.217 11.150 -3.874 19.259 Atomic orbital electron populations 1.23358 0.76261 1.05544 1.02281 1.86044 1.23632 1.25713 1.88904 1.18532 0.89681 0.85211 0.99616 1.20238 1.00811 0.88562 1.14255 1.18610 0.89146 0.86683 0.96727 1.86068 1.34939 1.12202 1.88484 1.23084 0.95241 0.81861 1.01945 1.22202 0.95945 0.95167 0.93368 1.61906 1.11289 1.52688 1.03031 1.22451 0.97278 0.99499 0.93565 1.22398 0.93138 0.93368 1.03181 1.21116 0.92706 0.98829 1.11563 1.20971 1.00282 0.90758 0.98051 1.17526 0.87845 0.88512 1.06897 1.43360 1.22244 1.12540 1.55193 1.17346 0.79753 0.90408 0.78355 1.90569 1.69634 1.37527 1.52585 1.20544 1.06320 0.96217 1.36995 0.89578 1.27016 0.97910 1.01693 0.91977 1.70168 1.17540 1.31021 1.24162 0.84917 0.77649 0.76378 0.79022 1.17080 1.18964 1.19139 0.92143 0.91242 0.86075 0.82436 0.92355 0.90424 0.90662 0.89011 0.94416 0.90824 0.92574 0.90954 0.90942 0.94675 0.84177 0.86586 0.76407 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.55 16 2 O -0.33 -11.34 10.05 -92.44 -0.93 -12.27 16 3 C 0.12 4.58 6.71 22.67 0.15 4.73 16 4 C -0.22 -7.38 8.97 22.44 0.20 -7.18 16 5 C 0.14 4.61 6.69 22.58 0.15 4.76 16 6 O -0.30 -8.84 10.06 -92.10 -0.93 -9.77 16 7 C 0.05 1.21 4.79 71.98 0.34 1.55 16 8 C 0.06 1.04 5.34 86.30 0.46 1.51 16 9 N -0.56 -10.80 4.94 -948.85 -4.69 -15.49 16 10 C 0.02 0.36 9.33 127.69 1.19 1.55 16 11 C 0.03 0.37 9.60 127.69 1.23 1.60 16 12 C -0.22 -8.38 9.03 22.39 0.20 -8.18 16 13 C -0.08 -3.71 8.69 22.40 0.19 -3.51 16 14 C 0.09 4.18 6.34 38.49 0.24 4.43 16 15 N -0.69 -34.84 5.16 -311.04 -1.61 -36.44 16 16 C 0.53 32.00 7.41 85.07 0.63 32.63 16 17 O -0.62 -41.27 12.23 -4.71 -0.06 -41.33 16 18 C -0.57 -32.59 9.30 23.56 0.22 -32.38 16 19 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 20 C 0.03 1.78 5.50 85.34 0.47 2.25 16 21 N -0.80 -48.42 11.73 21.85 0.26 -48.16 16 22 Si 1.00 40.67 29.56 68.60 2.03 42.70 16 23 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 26 H 0.06 1.25 7.66 -2.39 -0.02 1.24 16 27 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 28 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.16 4.32 6.29 -2.91 -0.02 4.30 16 30 H 0.06 1.37 5.92 -2.38 -0.01 1.35 16 31 H 0.08 1.54 7.66 -2.39 -0.02 1.52 16 32 H 0.08 0.98 8.12 -2.38 -0.02 0.96 16 33 H 0.09 1.46 8.07 -2.39 -0.02 1.44 16 34 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 1.22 8.07 -2.39 -0.02 1.20 16 36 H 0.06 1.18 6.42 -2.39 -0.02 1.17 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 0.92 8.04 -2.38 -0.02 0.90 16 39 H 0.03 0.40 8.13 -2.39 -0.02 0.38 16 40 H 0.14 4.51 6.28 -2.91 -0.02 4.50 16 41 H 0.12 6.28 6.13 -2.91 -0.02 6.26 16 42 H 0.40 18.16 8.51 -92.71 -0.79 17.37 16 43 H 0.28 15.08 8.29 -92.71 -0.77 14.31 16 Total: -1.00 -78.38 356.07 1.12 -77.26 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: 0.25 Total: 38.21 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 6.80 Total: 5.31 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -6.04 Total: -100.10 kcal Atomic # 8 Polarization: -61.46 SS G_CDS: -1.91 Total: -63.37 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -78.38 1.12 -77.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362553660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.271 kcal (2) G-P(sol) polarization free energy of solvation -78.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds