Wall clock time and date at job start Fri Apr 10 2020 22:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42902 * 113.99896 * 2 1 4 4 C 1.52998 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46984 * 304.99524 * 4 3 2 6 6 C 1.53000 * 109.46885 * 184.99819 * 4 3 2 7 7 N 1.46502 * 109.46632 * 179.97438 * 6 4 3 8 8 C 1.34786 * 119.99733 * 179.97438 * 7 6 4 9 9 O 1.21588 * 119.99956 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00052 * 179.97438 * 8 7 6 11 11 C 1.39951 * 120.00317 * 174.85075 * 10 8 7 12 12 C 1.39285 * 119.95185 * 145.76845 * 11 10 8 13 13 C 1.38491 * 120.43302 * 180.02562 * 12 11 10 14 14 C 1.37691 * 120.31882 * 359.97091 * 13 12 11 15 15 C 1.40744 * 119.88170 * 0.02562 * 14 13 12 16 16 C 1.41404 * 120.20577 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00047 * 205.17674 * 16 15 14 18 18 C 1.39932 * 120.00149 * 25.18733 * 16 15 14 19 19 N 1.30832 * 119.99819 * 16.77958 * 18 16 15 20 20 Si 1.86803 * 120.00068 * 196.78088 * 18 16 15 21 21 H 1.48498 * 109.46952 * 94.96220 * 20 18 16 22 22 H 1.48499 * 109.47063 * 214.96375 * 20 18 16 23 23 H 1.48501 * 109.46991 * 334.96350 * 20 18 16 24 24 C 1.38245 * 119.94333 * 325.49678 * 11 10 8 25 25 O 1.42902 * 109.46951 * 64.99849 * 4 3 2 26 26 C 1.42907 * 113.99769 * 269.99664 * 25 4 3 27 27 H 1.09000 * 109.46555 * 60.00434 * 1 2 3 28 28 H 1.09004 * 109.46740 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46974 * 300.00358 * 1 2 3 30 30 H 1.08992 * 109.47077 * 59.99372 * 3 2 1 31 31 H 1.09003 * 109.46804 * 300.00131 * 3 2 1 32 32 H 1.08996 * 109.46957 * 299.99628 * 6 4 3 33 33 H 1.08993 * 109.47356 * 60.00278 * 6 4 3 34 34 H 0.96997 * 120.00334 * 359.97438 * 7 6 4 35 35 H 0.97005 * 119.99681 * 354.84791 * 10 8 7 36 36 H 1.08001 * 119.78090 * 359.97438 * 12 11 10 37 37 H 1.07994 * 119.84192 * 179.97438 * 13 12 11 38 38 H 1.07990 * 120.05669 * 179.97438 * 14 13 12 39 39 H 0.97001 * 119.99773 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.15763 * 359.97438 * 24 11 10 41 41 H 1.09001 * 109.47167 * 300.00513 * 26 25 4 42 42 H 1.08996 * 109.46663 * 60.00359 * 26 25 4 43 43 H 1.09000 * 109.46549 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8515 0.5683 0.8410 6 6 4.1573 2.5770 0.1250 7 7 5.6178 2.4612 0.1250 8 6 6.3814 3.5672 0.2262 9 8 5.8582 4.6610 0.3170 10 7 7.7249 3.4608 0.2267 11 6 8.5183 4.6136 0.2230 12 6 9.7344 4.6231 0.9020 13 6 10.5272 5.7587 0.9053 14 6 10.1214 6.8916 0.2361 15 6 8.8951 6.8967 -0.4545 16 6 8.4715 8.0566 -1.1435 17 1 7.4194 8.2267 -1.3186 18 6 9.4154 8.9838 -1.5989 19 7 10.6756 8.6439 -1.6891 20 14 8.8762 10.7070 -2.0779 21 1 9.0577 11.6216 -0.9221 22 1 9.6976 11.1832 -3.2197 23 1 7.4448 10.6860 -2.4726 24 6 8.0964 5.7395 -0.4594 25 8 3.9649 0.5797 -1.2220 26 6 4.0464 -0.8460 -1.1671 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8414 3.1933 -0.7166 33 1 3.8299 3.0384 1.0566 34 1 6.0352 1.5887 0.0522 35 1 8.1420 2.5850 0.2297 36 1 10.0609 3.7394 1.4301 37 1 11.4681 5.7556 1.4352 38 1 10.7427 7.7748 0.2418 39 1 11.3298 9.2865 -2.0051 40 1 7.1559 5.7315 -0.9901 41 1 4.7576 -1.1398 -0.3951 42 1 3.0647 -1.2572 -0.9322 43 1 4.3794 -1.2282 -2.1320 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425709470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:46 Heat of formation + Delta-G solvation = -96.426499 kcal Electronic energy + Delta-G solvation = -24709.254188 eV Core-core repulsion = 20947.808758 eV Total energy + Delta-G solvation = -3761.445430 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.99196 -39.08797 -37.47534 -37.12661 -34.72086 -34.21375 -32.96868 -31.28855 -29.74201 -28.19772 -27.32336 -26.40404 -25.27831 -24.98727 -21.98499 -21.48314 -20.78154 -19.95296 -17.99512 -17.67931 -17.40130 -16.92358 -16.24771 -15.70731 -15.61365 -15.23447 -14.91257 -14.83392 -14.52881 -14.26267 -14.22396 -13.80029 -13.25371 -12.95674 -12.85063 -12.64755 -12.34192 -12.12178 -12.02451 -11.58440 -11.50878 -11.28844 -11.09982 -11.08375 -10.84369 -10.39877 -10.15848 -10.12271 -9.82327 -9.63629 -9.43080 -9.06971 -8.94552 -8.86001 -7.37011 -6.81625 -6.63438 -4.26288 2.74638 2.86507 3.03525 3.14035 3.19614 3.27566 3.40773 3.49395 3.79430 4.02270 4.49165 4.67755 4.71870 4.72525 4.74100 4.94371 4.97964 5.08248 5.14274 5.27179 5.29397 5.35309 5.49219 5.62663 5.73536 5.80563 6.30591 6.47003 6.55483 6.70775 6.85213 6.87417 6.89966 7.11788 7.16976 7.31800 7.42446 7.76391 7.90828 8.07120 8.18710 8.32403 8.51117 8.74168 8.97476 9.05087 9.12029 10.28764 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.002612 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.093903 B =10715.983865 C =11615.297012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.040 3.960 4 C 0.082 3.918 5 H 0.075 0.925 6 C 0.147 3.853 7 N -0.745 5.745 8 C 0.700 3.300 9 O -0.567 6.567 10 N -0.681 5.681 11 C 0.169 3.831 12 C -0.263 4.263 13 C -0.092 4.092 14 C -0.174 4.174 15 C 0.120 3.880 16 C -0.458 4.458 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.797 5.797 20 Si 0.908 3.092 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.262 1.262 24 C -0.209 4.209 25 O -0.375 6.375 26 C 0.030 3.970 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.395 0.605 35 H 0.394 0.606 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.279 0.721 40 H 0.107 0.893 41 H 0.038 0.962 42 H 0.057 0.943 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.520 -16.950 2.917 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.037 4.037 4 C 0.023 3.977 5 H 0.093 0.907 6 C 0.022 3.978 7 N -0.402 5.402 8 C 0.400 3.600 9 O -0.443 6.443 10 N -0.327 5.327 11 C 0.077 3.923 12 C -0.285 4.285 13 C -0.111 4.111 14 C -0.193 4.193 15 C 0.116 3.884 16 C -0.487 4.487 17 H 0.096 0.904 18 C -0.142 4.142 19 N -0.422 5.422 20 Si 0.733 3.267 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.230 4.230 25 O -0.293 6.293 26 C -0.067 4.067 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.228 0.772 35 H 0.227 0.773 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.673 -15.905 2.729 21.151 hybrid contribution -0.054 -0.170 -0.083 0.197 sum -13.726 -16.074 2.646 21.303 Atomic orbital electron populations 1.22758 0.80768 1.02758 1.00220 1.87832 1.20000 1.27592 1.95506 1.23063 0.93558 0.85362 1.01719 1.22362 0.91875 0.94908 0.88516 0.90681 1.21059 0.79472 0.94078 1.03182 1.44856 1.05858 1.08429 1.81087 1.15913 0.81576 0.84231 0.78259 1.90978 1.72329 1.25107 1.55854 1.42558 1.03979 1.08907 1.77262 1.17225 0.90965 0.85914 0.98168 1.20005 0.98160 0.99434 1.10875 1.20441 0.97541 0.93615 0.99539 1.21333 0.99370 0.97854 1.00782 1.17497 0.90768 0.91126 0.88965 1.19591 0.94537 1.03111 1.31503 0.90378 1.25900 0.94459 1.00260 0.93567 1.69839 1.02618 1.35396 1.34393 0.86298 0.79932 0.81890 0.78581 1.19399 1.20388 1.18568 1.21008 1.02883 0.92926 1.06225 1.87974 1.87766 1.20144 1.33436 1.22879 1.01033 0.80768 1.01995 0.93860 0.89625 0.93947 0.91860 0.91764 0.90505 0.90078 0.77202 0.77284 0.89398 0.89100 0.86361 0.91050 0.87520 0.94350 0.92478 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.47 8.83 -40.09 -0.35 -3.82 16 3 C 0.04 0.34 5.60 37.16 0.21 0.55 16 4 C 0.08 0.78 2.58 -26.73 -0.07 0.71 16 5 H 0.08 0.64 7.79 -51.93 -0.40 0.23 16 6 C 0.15 1.74 5.37 -4.04 -0.02 1.72 16 7 N -0.74 -10.08 5.45 -65.23 -0.36 -10.43 16 8 C 0.70 13.18 8.29 -86.91 -0.72 12.46 16 9 O -0.57 -13.32 14.10 5.29 0.07 -13.25 16 10 N -0.68 -12.68 5.34 -14.27 -0.08 -12.76 16 11 C 0.17 3.97 6.25 -83.76 -0.52 3.45 16 12 C -0.26 -5.95 9.97 -39.10 -0.39 -6.34 16 13 C -0.09 -2.21 10.02 -39.69 -0.40 -2.61 16 14 C -0.17 -4.67 8.69 -38.84 -0.34 -5.00 16 15 C 0.12 3.38 5.57 -106.85 -0.59 2.78 16 16 C -0.46 -12.88 9.05 -37.74 -0.34 -13.22 16 17 H 0.08 2.18 7.90 -52.48 -0.41 1.76 16 18 C 0.08 1.96 5.16 -17.34 -0.09 1.88 16 19 N -0.80 -21.18 10.94 55.55 0.61 -20.57 16 20 Si 0.91 19.52 29.59 -169.99 -5.03 14.49 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 23 H -0.26 -5.62 7.11 56.52 0.40 -5.21 16 24 C -0.21 -5.60 8.39 -38.68 -0.32 -5.93 16 25 O -0.37 -4.08 10.09 -40.09 -0.40 -4.48 16 26 C 0.03 0.25 10.71 101.05 1.08 1.33 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.39 4.25 8.37 -40.82 -0.34 3.91 16 35 H 0.39 5.69 8.84 -40.82 -0.36 5.33 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.12 3.25 6.17 -52.49 -0.32 2.93 16 39 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 40 H 0.11 2.98 6.48 -52.49 -0.34 2.64 16 41 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 42 H 0.06 0.48 6.40 -51.93 -0.33 0.15 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -33.38 361.88 -7.79 -41.17 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.30 Total: 11.12 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.41 Total: -6.92 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.18 Total: -43.76 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.68 Total: -21.55 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.38 -7.79 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425709470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.257 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds