Wall clock time and date at job start Fri Apr 10 2020 22:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34960 * 125.97985 * 124.71356 * 10 9 7 12 12 C 1.35243 * 107.86064 * 179.83521 * 11 10 9 13 13 C 1.40395 * 107.86535 * 0.42509 * 12 11 10 14 14 N 1.40196 * 125.97533 * 179.71691 * 13 12 11 15 15 C 1.34787 * 119.99563 * 359.97438 * 14 13 12 16 16 O 1.21589 * 119.99988 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99663 * 179.97438 * 15 14 13 18 18 C 1.46500 * 119.99738 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47049 * 179.97438 * 18 17 15 20 20 H 1.08999 * 109.47249 * 305.00374 * 19 18 17 21 21 O 1.42897 * 109.46952 * 65.00660 * 19 18 17 22 22 C 1.53002 * 109.46872 * 185.00361 * 19 18 17 23 23 C 1.53778 * 113.61428 * 279.13678 * 22 19 18 24 24 C 1.53954 * 87.02050 * 220.04866 * 23 22 19 25 25 C 1.53777 * 87.10867 * 25.36662 * 24 23 22 26 26 N 1.31213 * 108.05618 * 359.73465 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.08007 * 126.06930 * 359.97438 * 11 10 9 31 31 H 1.08003 * 126.06501 * 180.12029 * 12 11 10 32 32 H 0.96998 * 120.00770 * 179.97438 * 14 13 12 33 33 H 0.96998 * 120.00102 * 0.02562 * 17 15 14 34 34 H 1.08994 * 109.47484 * 300.00768 * 18 17 15 35 35 H 1.09001 * 109.46808 * 60.00196 * 18 17 15 36 36 H 0.96698 * 114.00295 * 59.99563 * 21 19 18 37 37 H 1.08999 * 112.85212 * 50.33703 * 22 19 18 38 38 H 1.09003 * 113.61935 * 334.57092 * 23 22 19 39 39 H 1.09005 * 113.61512 * 105.47077 * 23 22 19 40 40 H 1.09000 * 113.53813 * 270.81400 * 24 23 22 41 41 H 1.09004 * 113.73965 * 139.93966 * 24 23 22 42 42 H 1.09011 * 113.61266 * 220.08867 * 25 24 23 43 43 H 1.09000 * 113.62005 * 89.18682 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8835 12 6 3.2626 -5.4440 0.5300 13 6 3.8667 -4.9131 -0.6208 14 7 4.9608 -5.4620 -1.3044 15 6 5.5275 -6.6027 -0.8635 16 8 5.0902 -7.1553 0.1273 17 7 6.5789 -7.1307 -1.5210 18 6 7.1953 -8.3702 -1.0415 19 6 8.3585 -8.7499 -1.9600 20 1 8.0041 -8.8105 -2.9890 21 8 9.3826 -7.7578 -1.8665 22 6 8.9225 -10.1069 -1.5341 23 6 9.8860 -10.0257 -0.3383 24 6 10.7475 -11.0750 -1.0641 25 6 10.1259 -10.5650 -2.3749 26 7 3.2287 -3.8132 -0.9445 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5912 -4.7504 1.7304 31 1 3.5584 -6.3462 1.0448 32 1 5.3099 -5.0210 -2.0946 33 1 6.9280 -6.6896 -2.3112 34 1 7.5659 -8.2229 -0.0271 35 1 6.4541 -9.1694 -1.0450 36 1 9.7453 -7.6494 -0.9767 37 1 8.1519 -10.8696 -1.4230 38 1 10.3734 -9.0561 -0.2352 39 1 9.4538 -10.3846 0.5958 40 1 10.4764 -12.1029 -0.8232 41 1 11.8193 -10.8911 -0.9886 42 1 9.8871 -11.3589 -3.0828 43 1 10.6790 -9.7432 -2.8298 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476179383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:06:08 Heat of formation + Delta-G solvation = -5.957168 kcal Electronic energy + Delta-G solvation = -24408.031173 eV Core-core repulsion = 20682.801538 eV Total energy + Delta-G solvation = -3725.229635 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.30470 -41.12080 -40.36026 -37.19958 -36.40321 -35.53663 -35.33175 -32.69154 -31.04756 -30.61821 -28.17616 -26.70674 -26.15415 -25.01143 -23.23413 -22.73503 -22.12488 -21.32208 -20.13930 -19.31353 -19.18962 -18.43517 -17.90191 -17.18690 -16.96262 -16.56351 -16.27043 -15.96937 -15.79445 -15.56266 -15.28142 -15.04124 -14.90543 -14.23662 -14.00308 -13.91019 -13.71948 -13.58045 -13.28175 -13.21191 -12.80883 -12.59936 -12.17231 -12.01900 -11.97708 -11.80970 -11.69393 -11.37993 -11.23138 -11.05534 -11.00339 -10.71789 -10.68527 -10.25563 -9.80634 -9.14685 -8.76638 -6.55398 0.98762 1.07363 1.50581 1.58434 1.63908 1.78353 2.02719 2.35555 2.48503 3.01256 3.07300 3.46855 3.48799 3.73613 3.82182 3.86901 3.97689 4.10095 4.14710 4.24885 4.39395 4.56897 4.62420 4.75534 4.78803 4.83305 4.86230 4.89863 4.91914 5.00007 5.07624 5.11368 5.14926 5.36216 5.43179 5.55036 5.62965 5.78987 5.85239 5.95701 6.27966 6.42465 6.66672 6.73918 7.07415 7.20302 7.38750 8.58654 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.031397 B = 0.002150 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.604689 B =13021.206045 C =13561.883228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.020 4.020 3 Si 1.123 2.877 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.621 4.621 8 H 0.044 0.956 9 C 0.259 3.741 10 N -0.344 5.344 11 C 0.055 3.945 12 C -0.290 4.290 13 C 0.287 3.713 14 N -0.637 5.637 15 C 0.710 3.290 16 O -0.602 6.602 17 N -0.718 5.718 18 C 0.109 3.891 19 C 0.116 3.884 20 H 0.114 0.886 21 O -0.565 6.565 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.142 4.142 25 C -0.130 4.130 26 N -0.348 5.348 27 H 0.261 0.739 28 H 0.055 0.945 29 H 0.017 0.983 30 H 0.202 0.798 31 H 0.169 0.831 32 H 0.420 0.580 33 H 0.414 0.586 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.383 0.617 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.687 -22.184 -3.306 30.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.944 3.056 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.659 4.659 8 H 0.063 0.937 9 C 0.140 3.860 10 N -0.126 5.126 11 C -0.093 4.093 12 C -0.321 4.321 13 C 0.031 3.969 14 N -0.289 5.289 15 C 0.410 3.590 16 O -0.480 6.480 17 N -0.375 5.375 18 C -0.015 4.015 19 C 0.057 3.943 20 H 0.131 0.869 21 O -0.374 6.374 22 C -0.158 4.158 23 C -0.181 4.181 24 C -0.179 4.179 25 C -0.168 4.168 26 N -0.179 5.179 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.219 0.781 31 H 0.186 0.814 32 H 0.258 0.742 33 H 0.250 0.750 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.235 0.765 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 19.853 -19.987 -3.867 28.436 hybrid contribution 0.178 -1.959 0.414 2.010 sum 20.031 -21.946 -3.453 29.913 Atomic orbital electron populations 1.70915 1.07415 1.30200 1.47415 1.27285 0.96468 1.06088 0.92111 0.82839 0.73816 0.70962 0.78027 1.19333 1.20590 1.20036 1.22305 0.94652 0.92138 1.56755 0.93734 1.19426 0.86424 0.82797 0.97380 1.48546 1.24113 1.20219 1.19755 1.23175 1.00619 0.88784 0.96678 1.21704 1.02170 1.06531 1.01699 1.19103 0.90880 0.92820 0.94109 1.41410 1.30525 1.25428 1.31539 1.15816 0.80699 0.79651 0.82848 1.90832 1.65882 1.63104 1.28223 1.44831 1.31988 1.28096 1.32539 1.22080 0.95744 0.84872 0.98767 1.21965 0.85132 0.87450 0.99784 0.86871 1.86593 1.55178 1.59197 1.36451 1.23210 0.97539 0.97032 0.98048 1.23026 0.97607 1.00266 0.97242 1.22815 0.99653 0.99053 0.96386 1.22878 0.96395 1.00873 0.96647 1.77266 1.04975 1.18167 1.17522 0.92940 0.92771 0.96542 0.78126 0.81358 0.74236 0.74953 0.91472 0.90714 0.76545 0.87589 0.89276 0.91132 0.89877 0.91275 0.91186 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.27 13.65 21.45 0.29 -53.97 16 2 C -0.02 -1.12 5.46 84.65 0.46 -0.66 16 3 Si 1.12 50.17 29.90 68.60 2.05 52.23 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.62 -35.70 9.24 25.60 0.24 -35.47 16 8 H 0.04 2.69 7.81 -2.91 -0.02 2.67 16 9 C 0.26 13.50 5.57 85.64 0.48 13.98 16 10 N -0.34 -16.49 3.67 -351.84 -1.29 -17.78 16 11 C 0.06 2.23 11.43 83.52 0.96 3.18 16 12 C -0.29 -11.61 9.61 22.10 0.21 -11.40 16 13 C 0.29 11.73 8.11 133.31 1.08 12.82 16 14 N -0.64 -19.74 5.46 -321.22 -1.75 -21.49 16 15 C 0.71 20.23 8.53 179.05 1.53 21.76 16 16 O -0.60 -21.23 13.47 -4.00 -0.05 -21.29 16 17 N -0.72 -13.15 5.51 -478.52 -2.64 -15.79 16 18 C 0.11 1.59 5.29 86.38 0.46 2.04 16 19 C 0.12 1.14 3.06 30.60 0.09 1.23 16 20 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 21 O -0.57 -6.44 12.52 -148.98 -1.86 -8.30 16 22 C -0.14 -1.14 3.58 -10.27 -0.04 -1.18 16 23 C -0.14 -1.13 7.42 31.18 0.23 -0.90 16 24 C -0.14 -1.12 8.09 31.18 0.25 -0.87 16 25 C -0.13 -1.11 7.54 31.12 0.23 -0.87 16 26 N -0.35 -16.60 12.42 -54.44 -0.68 -17.28 16 27 H 0.26 15.18 7.22 -92.71 -0.67 14.51 16 28 H 0.05 2.70 7.94 -2.39 -0.02 2.68 16 29 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 30 H 0.20 6.34 8.06 -2.91 -0.02 6.31 16 31 H 0.17 6.55 5.91 -2.91 -0.02 6.53 16 32 H 0.42 10.53 8.84 -92.71 -0.82 9.71 16 33 H 0.41 5.68 8.49 -92.71 -0.79 4.89 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.38 2.92 6.82 -74.06 -0.51 2.42 16 37 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.09 0.59 5.92 -2.39 -0.01 0.57 16 39 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 43 H 0.08 0.83 7.72 -2.39 -0.02 0.82 16 Total: -1.00 -74.25 358.70 -0.69 -74.95 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: -0.95 Total: 25.06 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 6.18 Total: 3.67 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -6.06 Total: -126.31 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -1.92 Total: -29.59 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.05 Total: 52.23 kcal Total: -74.25 -0.69 -74.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476179383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.988 kcal (2) G-P(sol) polarization free energy of solvation -74.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds