Wall clock time and date at job start Fri Apr 10 2020 22:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00055 * 2 1 4 4 C 1.53000 * 109.47026 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47280 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47148 * 305.00626 * 5 4 3 7 7 N 1.46907 * 109.46863 * 65.00169 * 5 4 3 8 8 C 1.50698 * 109.47328 * 185.00270 * 5 4 3 9 9 O 1.21285 * 119.99665 * 259.99998 * 8 5 4 10 10 N 1.34766 * 120.00138 * 79.99932 * 8 5 4 11 11 C 1.46496 * 120.00212 * 180.02562 * 10 8 5 12 12 C 1.50701 * 109.47321 * 180.02562 * 11 10 8 13 13 C 1.38302 * 119.92948 * 269.72563 * 12 11 10 14 14 C 1.38102 * 120.06847 * 179.72523 * 13 12 11 15 15 C 1.38878 * 119.93104 * 0.56862 * 14 13 12 16 16 O 1.35751 * 120.07387 * 179.68334 * 15 14 13 17 17 C 1.34826 * 117.00405 * 174.48976 * 16 15 14 18 18 H 1.08010 * 119.99839 * 5.05505 * 17 16 15 19 19 C 1.38648 * 120.00428 * 185.05776 * 17 16 15 20 20 N 1.31558 * 119.99645 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00551 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47377 * 89.99564 * 21 19 17 23 23 H 1.48500 * 109.47093 * 210.00110 * 21 19 17 24 24 H 1.48504 * 109.46776 * 329.99600 * 21 19 17 25 25 C 1.38883 * 119.86112 * 359.70516 * 15 14 13 26 26 C 1.38101 * 119.92995 * 0.02562 * 25 15 14 27 27 H 1.09006 * 109.46649 * 59.99817 * 1 2 3 28 28 H 1.08999 * 109.47177 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47127 * 300.00454 * 1 2 3 30 30 H 1.09010 * 109.47345 * 60.00106 * 3 2 1 31 31 H 1.08996 * 109.47816 * 300.00140 * 3 2 1 32 32 H 1.09000 * 109.47147 * 60.00325 * 4 3 2 33 33 H 1.08999 * 109.47433 * 300.00121 * 4 3 2 34 34 H 1.00895 * 110.99701 * 60.00468 * 7 5 4 35 35 H 1.00902 * 110.99551 * 183.95336 * 7 5 4 36 36 H 0.96997 * 120.00139 * 0.02562 * 10 8 5 37 37 H 1.09000 * 109.47088 * 300.00038 * 11 10 8 38 38 H 1.09003 * 109.47212 * 60.00532 * 11 10 8 39 39 H 1.08000 * 119.96776 * 359.97438 * 13 12 11 40 40 H 1.08002 * 120.03722 * 180.27568 * 14 13 12 41 41 H 0.97007 * 120.00020 * 180.02562 * 20 19 17 42 42 H 1.07998 * 120.03871 * 179.97438 * 25 15 14 43 43 H 1.07999 * 119.96930 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1579 2.5823 0.0013 6 1 3.7675 3.1542 -0.8404 7 7 3.8218 3.2673 1.2566 8 6 5.6553 2.4655 -0.1220 9 8 6.3543 2.5633 0.8643 10 7 6.2175 2.2524 -1.3281 11 6 7.6731 2.1383 -1.4478 12 6 8.0417 1.9043 -2.8902 13 6 8.1374 0.6134 -3.3772 14 6 8.4695 0.3958 -4.7000 15 6 8.7189 1.4745 -5.5383 16 8 9.0518 1.2637 -6.8374 17 6 9.1688 2.3526 -7.6238 18 1 9.0802 3.3402 -7.1955 19 6 9.4026 2.2047 -8.9824 20 7 9.5099 1.0019 -9.5043 21 14 9.5654 3.7134 -10.0719 22 1 10.9884 4.1343 -10.1253 23 1 9.0937 3.3878 -11.4418 24 1 8.7432 4.8173 -9.5146 25 6 8.6276 2.7695 -5.0448 26 6 8.2896 2.9806 -3.7225 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6887 1.8464 0.8901 31 1 1.6887 1.8464 -0.8899 32 1 3.8575 0.6435 -0.8891 33 1 3.8568 0.6438 0.8908 34 1 4.1731 2.7564 2.0526 35 1 4.1668 4.2155 1.2546 36 1 5.6585 2.1746 -2.1169 37 1 8.1397 3.0595 -1.0988 38 1 8.0231 1.3018 -0.8428 39 1 7.9484 -0.2252 -2.7235 40 1 8.5397 -0.6124 -5.0809 41 1 9.6739 0.8984 -10.4547 42 1 8.8214 3.6104 -5.6941 43 1 8.2180 3.9874 -3.3381 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578997333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:06:20 Heat of formation + Delta-G solvation = -119.125263 kcal Electronic energy + Delta-G solvation = -24200.423246 eV Core-core repulsion = 20437.993523 eV Total energy + Delta-G solvation = -3762.429723 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19662 -40.68937 -38.88407 -38.52074 -36.20505 -35.71006 -34.28486 -31.87014 -31.61092 -31.35045 -28.15883 -27.52487 -26.74337 -25.29280 -23.66357 -22.92560 -22.13806 -21.21416 -19.88467 -18.96170 -18.50587 -17.73152 -17.15660 -16.92504 -16.66278 -16.46843 -16.33337 -15.96329 -15.74796 -15.60117 -15.54483 -15.17951 -14.88121 -14.64295 -14.39188 -14.23033 -13.68950 -13.66383 -13.34217 -13.04584 -12.73488 -12.62352 -12.56350 -12.38168 -12.25898 -12.15912 -12.12208 -11.97083 -11.37399 -11.21321 -10.82280 -10.55861 -10.11457 -9.85262 -9.82718 -9.00838 -8.48985 -6.17345 0.52867 0.56062 1.35686 1.43926 1.49977 1.52783 2.16450 2.23954 2.81307 2.93738 3.16744 3.44999 3.47274 3.78625 3.91118 3.99456 4.02714 4.10116 4.15772 4.30017 4.42551 4.43177 4.54993 4.58465 4.61125 4.65289 4.73151 4.78755 4.89723 5.02435 5.05497 5.06952 5.13149 5.24852 5.38282 5.51090 5.67836 5.72883 5.94811 6.00545 6.14347 6.29272 6.37570 6.53835 6.95799 7.16004 7.74897 8.73806 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.002424 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.162755 B =11546.822081 C =12265.519438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.423 6.423 3 C 0.071 3.929 4 C -0.101 4.101 5 C 0.088 3.912 6 H 0.127 0.873 7 N -0.816 5.816 8 C 0.480 3.520 9 O -0.585 6.585 10 N -0.710 5.710 11 C 0.182 3.818 12 C -0.183 4.183 13 C -0.044 4.044 14 C -0.205 4.205 15 C 0.122 3.878 16 O -0.229 6.229 17 C -0.414 4.414 18 H 0.104 0.896 19 C -0.022 4.022 20 N -0.919 5.919 21 Si 1.018 2.982 22 H -0.264 1.264 23 H -0.272 1.272 24 H -0.251 1.251 25 C -0.243 4.243 26 C -0.045 4.045 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.348 0.652 35 H 0.351 0.649 36 H 0.412 0.588 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.146 0.854 40 H 0.114 0.886 41 H 0.273 0.727 42 H 0.121 0.879 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.859 4.713 17.991 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.343 6.343 3 C -0.005 4.005 4 C -0.139 4.139 5 C -0.028 4.028 6 H 0.144 0.856 7 N -0.345 5.345 8 C 0.266 3.734 9 O -0.465 6.465 10 N -0.361 5.361 11 C 0.059 3.941 12 C -0.184 4.184 13 C -0.063 4.063 14 C -0.224 4.224 15 C 0.071 3.929 16 O -0.135 6.135 17 C -0.489 4.489 18 H 0.121 0.879 19 C -0.220 4.220 20 N -0.557 5.557 21 Si 0.837 3.163 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.175 1.175 25 C -0.262 4.262 26 C -0.064 4.064 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.248 0.752 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.164 0.836 40 H 0.133 0.867 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.942 4.203 18.167 23.895 hybrid contribution 1.132 0.506 -1.164 1.701 sum -13.809 4.708 17.003 22.404 Atomic orbital electron populations 1.22886 0.79560 1.03580 1.00857 1.87809 1.21436 1.29347 1.95679 1.22438 0.92457 0.83945 1.01705 1.21348 0.94700 0.94283 1.03618 1.21501 0.87323 0.97322 0.96653 0.85560 1.59203 1.65052 1.07201 1.03047 1.22461 0.93068 0.75225 0.82679 1.90690 1.65288 1.52363 1.38185 1.46315 1.07985 1.71755 1.10083 1.19889 0.80703 1.01907 0.91596 1.19487 1.10313 0.92953 0.95619 1.20872 0.95269 0.97220 0.92921 1.20450 1.10324 0.97062 0.94550 1.19997 0.92632 0.94980 0.85262 1.83949 1.77167 1.35619 1.16756 1.21833 1.51468 0.85955 0.89691 0.87856 1.26589 0.95898 1.01974 0.97523 1.70182 1.47430 1.24237 1.13829 0.84592 0.79373 0.75675 0.76634 1.18936 1.19687 1.17486 1.21249 1.11147 0.96032 0.97815 1.20935 0.94760 0.99306 0.91393 0.93204 0.88932 0.93171 0.91657 0.92191 0.90050 0.91735 0.83820 0.83574 0.75151 0.91176 0.91175 0.83649 0.86748 0.91790 0.86136 0.84251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.42 -7.92 10.70 -148.98 -1.59 -9.52 16 3 C 0.07 1.05 5.83 71.98 0.42 1.47 16 4 C -0.10 -1.55 5.21 30.59 0.16 -1.39 16 5 C 0.09 1.26 3.15 44.17 0.14 1.39 16 6 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 7 N -0.82 -11.33 8.44 -171.79 -1.45 -12.78 16 8 C 0.48 9.75 7.07 87.66 0.62 10.37 16 9 O -0.58 -16.17 16.25 -3.04 -0.05 -16.22 16 10 N -0.71 -13.73 5.55 -466.80 -2.59 -16.32 16 11 C 0.18 4.19 5.80 85.63 0.50 4.68 16 12 C -0.18 -5.06 5.25 -19.83 -0.10 -5.17 16 13 C -0.04 -1.35 9.69 22.25 0.22 -1.13 16 14 C -0.20 -8.13 9.99 22.39 0.22 -7.90 16 15 C 0.12 5.76 6.65 22.58 0.15 5.91 16 16 O -0.23 -13.29 9.76 -22.71 -0.22 -13.51 16 17 C -0.41 -23.26 9.49 67.92 0.64 -22.61 16 18 H 0.10 5.28 5.20 -2.91 -0.02 5.27 16 19 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 20 N -0.92 -55.24 13.67 21.61 0.30 -54.94 16 21 Si 1.02 41.54 29.55 68.60 2.03 43.57 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 25 C -0.24 -9.81 9.17 22.39 0.21 -9.60 16 26 C -0.05 -1.40 9.69 22.25 0.22 -1.19 16 27 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.95 7.75 -2.38 -0.02 0.93 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.35 5.45 8.58 -89.70 -0.77 4.68 16 35 H 0.35 4.46 9.06 -89.69 -0.81 3.65 16 36 H 0.41 6.77 8.46 -92.71 -0.78 5.99 16 37 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 38 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 39 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 40 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 42 H 0.12 4.98 5.64 -2.91 -0.02 4.96 16 43 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -71.84 369.07 0.20 -71.64 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -1.31 Total: 32.42 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 5.10 Total: -24.34 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -3.74 Total: -84.04 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -1.87 Total: -39.25 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -71.84 0.20 -71.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578997333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.486 kcal (2) G-P(sol) polarization free energy of solvation -71.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds