Wall clock time and date at job start Fri Apr 10 2020 22:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99900 * 2 1 4 4 H 1.48498 * 109.47471 * 269.99959 * 3 2 1 5 5 H 1.48504 * 109.47232 * 30.00331 * 3 2 1 6 6 H 1.48501 * 109.46984 * 150.00214 * 3 2 1 7 7 C 1.37880 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99546 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00052 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47118 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47216 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.46786 * 304.99769 * 11 10 9 13 13 N 1.46896 * 109.47403 * 64.99595 * 11 10 9 14 14 C 1.50700 * 109.47164 * 185.00058 * 11 10 9 15 15 O 1.21279 * 120.00113 * 259.99858 * 14 11 10 16 16 N 1.34784 * 119.99961 * 79.99626 * 14 11 10 17 17 C 1.46927 * 120.62995 * 359.72079 * 16 14 11 18 18 C 1.52758 * 109.00682 * 233.58186 * 17 16 14 19 19 C 1.53039 * 109.38439 * 305.58958 * 18 17 16 20 20 C 1.53041 * 109.53647 * 61.24252 * 19 18 17 21 21 H 1.08997 * 109.50160 * 58.58619 * 20 19 18 22 22 C 1.50703 * 109.52286 * 178.66650 * 20 19 18 23 23 N 1.34492 * 126.28898 * 239.84997 * 22 20 19 24 24 C 1.31125 * 105.61813 * 179.97438 * 23 22 20 25 25 O 1.33650 * 106.89863 * 0.02562 * 24 23 22 26 26 N 1.21301 * 109.80778 * 359.73489 * 25 24 23 27 27 C 1.46923 * 120.62964 * 179.97438 * 16 14 11 28 28 H 0.96995 * 120.00141 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47405 * 60.00167 * 9 7 2 30 30 H 1.08998 * 109.47422 * 299.99957 * 9 7 2 31 31 H 1.08996 * 109.46899 * 60.00345 * 10 9 7 32 32 H 1.08998 * 109.46940 * 300.00253 * 10 9 7 33 33 H 1.00898 * 111.00348 * 296.04583 * 13 11 10 34 34 H 1.00903 * 110.99667 * 60.00651 * 13 11 10 35 35 H 1.09003 * 109.58790 * 353.42296 * 17 16 14 36 36 H 1.09007 * 109.58432 * 113.84106 * 17 16 14 37 37 H 1.08998 * 109.56153 * 185.55612 * 18 17 16 38 38 H 1.09003 * 109.38437 * 65.51806 * 18 17 16 39 39 H 1.09000 * 109.45771 * 301.22193 * 19 18 17 40 40 H 1.08998 * 109.44648 * 181.25661 * 19 18 17 41 41 H 1.07997 * 126.55243 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.59009 * 246.15627 * 27 16 14 43 43 H 1.09003 * 109.58381 * 6.44334 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6365 -0.0009 12 1 5.9149 -2.0471 -0.8429 13 7 6.0413 -2.0510 1.2542 14 6 6.0540 -4.0519 -0.1247 15 8 6.4281 -4.6509 0.8613 16 7 6.0875 -4.6520 -1.3310 17 6 5.6319 -3.9414 -2.5336 18 6 4.5829 -4.7924 -3.2469 19 6 5.1575 -6.1846 -3.5188 20 6 5.5098 -6.8609 -2.1920 21 1 4.6171 -6.9297 -1.5703 22 6 6.0450 -8.2443 -2.4584 23 7 5.5229 -9.3998 -2.0101 24 6 6.3019 -10.3446 -2.4789 25 8 7.2609 -9.7413 -3.1878 26 7 7.0930 -8.5401 -3.1676 27 6 6.5752 -6.0312 -1.4677 28 1 -0.4850 0.8400 -0.0004 29 1 3.8753 -0.6804 0.8888 30 1 3.8746 -0.6800 -0.8911 31 1 3.6580 -3.1505 -0.8907 32 1 3.6586 -3.1501 0.8892 33 1 5.7719 -1.0816 1.3303 34 1 5.7178 -2.5799 2.0502 35 1 5.1928 -2.9853 -2.2487 36 1 6.4773 -3.7732 -3.2009 37 1 4.3105 -4.3205 -4.1909 38 1 3.6986 -4.8807 -2.6158 39 1 6.0555 -6.0937 -4.1299 40 1 4.4177 -6.7855 -4.0476 41 1 6.1901 -11.4073 -2.3222 42 1 7.4988 -6.0367 -2.0464 43 1 6.7605 -6.4528 -0.4797 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:06:26 Heat of formation + Delta-G solvation = -1.209367 kcal Electronic energy + Delta-G solvation = -25809.068027 eV Core-core repulsion = 22084.044272 eV Total energy + Delta-G solvation = -3725.023755 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -46.64859 -41.56109 -39.05294 -37.22217 -36.85000 -34.85691 -34.49295 -33.22236 -32.09129 -31.90367 -28.73374 -26.84728 -26.05935 -25.14664 -24.64480 -23.30064 -22.15363 -21.58132 -19.93966 -19.19288 -19.06616 -18.82716 -18.50017 -17.25287 -16.78079 -16.31497 -16.21167 -16.03550 -15.84912 -15.42250 -15.30339 -15.02434 -14.83461 -14.64172 -14.40194 -13.98837 -13.67153 -13.59853 -13.48109 -13.05359 -12.85818 -12.71689 -12.51917 -12.14024 -12.12687 -12.06560 -11.97764 -11.86245 -11.78306 -11.67673 -11.39840 -11.07310 -10.76417 -10.75319 -9.81859 -9.67245 -8.28432 -6.33931 0.25358 1.17836 1.39200 1.41833 1.50405 1.52642 1.78592 2.19617 2.37469 2.70056 3.07273 3.07921 3.35124 3.65415 3.71160 3.76591 3.77808 3.96160 4.03377 4.10427 4.13856 4.24401 4.40316 4.51548 4.55841 4.63351 4.64707 4.72923 4.74515 4.84603 4.93658 4.97754 4.99136 5.05944 5.27218 5.38507 5.39829 5.46318 5.63441 6.00672 6.25901 6.28368 6.46616 6.74539 7.05955 7.19506 7.30907 8.88327 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022924 B = 0.003117 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.111970 B = 8979.636648 C = 9496.443345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.238 1.238 7 C -0.532 4.532 8 H 0.026 0.974 9 C -0.004 4.004 10 C -0.119 4.119 11 C 0.082 3.918 12 H 0.123 0.877 13 N -0.831 5.831 14 C 0.525 3.475 15 O -0.573 6.573 16 N -0.607 5.607 17 C 0.094 3.906 18 C -0.132 4.132 19 C -0.100 4.100 20 C -0.008 4.008 21 H 0.088 0.912 22 C 0.166 3.834 23 N -0.525 5.525 24 C 0.186 3.814 25 O 0.079 5.921 26 N -0.393 5.393 27 C 0.131 3.869 28 H 0.266 0.734 29 H 0.024 0.976 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.356 0.644 34 H 0.344 0.656 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.318 0.682 42 H 0.082 0.918 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.997 -16.623 -10.552 25.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.193 4.193 3 Si 0.775 3.225 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.161 1.161 7 C -0.570 4.570 8 H 0.045 0.955 9 C -0.042 4.042 10 C -0.158 4.158 11 C -0.033 4.033 12 H 0.140 0.860 13 N -0.363 5.363 14 C 0.314 3.686 15 O -0.452 6.452 16 N -0.340 5.340 17 C -0.027 4.027 18 C -0.170 4.170 19 C -0.138 4.138 20 C -0.029 4.029 21 H 0.106 0.894 22 C -0.107 4.107 23 N -0.257 5.257 24 C -0.053 4.053 25 O 0.019 5.981 26 N -0.100 5.100 27 C 0.007 3.993 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.333 0.667 42 H 0.100 0.900 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.944 -16.201 -10.473 25.675 hybrid contribution -1.617 0.296 0.606 1.752 sum 15.327 -15.905 -9.867 24.191 Atomic orbital electron populations 1.70081 1.08556 1.28199 1.52536 1.26061 0.95578 1.03711 0.93999 0.85631 0.79670 0.77767 0.79417 1.18755 1.21793 1.16146 1.21405 0.92104 0.92867 1.50640 0.95549 1.19492 0.93856 0.93509 0.97332 1.22056 0.93116 0.98991 1.01680 1.21471 0.93579 0.91972 0.96320 0.85977 1.58756 1.66549 1.07704 1.03290 1.20921 0.76427 0.88922 0.82306 1.90619 1.49589 1.66893 1.38062 1.48074 1.64065 1.14017 1.07812 1.22085 0.98810 0.96180 0.85674 1.21850 0.97900 0.94896 1.02327 1.21512 1.02190 0.96050 0.94050 1.19865 0.98533 0.84900 0.99647 0.89361 1.25659 0.91582 0.97452 0.96025 1.71915 1.29651 0.98976 1.25204 1.31648 0.82100 1.03873 0.87671 1.85283 1.44917 1.13078 1.54798 1.74614 1.19504 0.94578 1.21280 1.21381 0.95805 0.81266 1.00871 0.92561 0.95774 0.94830 0.91359 0.94254 0.82867 0.84250 0.88491 0.88409 0.87343 0.92376 0.90006 0.90807 0.66732 0.89958 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 2 C 0.00 0.18 5.47 84.65 0.46 0.64 16 3 Si 0.95 41.91 27.47 68.60 1.88 43.79 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.24 -9.40 6.54 99.48 0.65 -8.75 16 7 C -0.53 -29.38 9.66 25.60 0.25 -29.13 16 8 H 0.03 1.64 7.99 -2.91 -0.02 1.61 16 9 C 0.00 -0.19 3.81 29.85 0.11 -0.07 16 10 C -0.12 -4.33 4.45 30.60 0.14 -4.19 16 11 C 0.08 2.51 2.35 44.17 0.10 2.61 16 12 H 0.12 3.19 6.81 -2.38 -0.02 3.17 16 13 N -0.83 -25.92 8.94 -171.81 -1.54 -27.45 16 14 C 0.53 17.10 6.95 87.66 0.61 17.71 16 15 O -0.57 -22.70 15.66 -3.03 -0.05 -22.75 16 16 N -0.61 -15.78 2.98 -819.64 -2.44 -18.22 16 17 C 0.09 1.86 5.73 86.22 0.49 2.36 16 18 C -0.13 -2.44 6.06 30.53 0.19 -2.25 16 19 C -0.10 -1.81 5.15 30.62 0.16 -1.66 16 20 C -0.01 -0.19 2.81 -11.45 -0.03 -0.22 16 21 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 22 C 0.17 3.66 6.73 138.46 0.93 4.59 16 23 N -0.53 -10.60 11.55 -315.35 -3.64 -14.24 16 24 C 0.19 1.89 13.40 130.51 1.75 3.63 16 25 O 0.08 1.17 11.31 74.77 0.85 2.02 16 26 N -0.39 -8.11 12.16 -60.36 -0.73 -8.85 16 27 C 0.13 3.27 5.70 86.38 0.49 3.76 16 28 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.02 0.99 5.92 -2.39 -0.01 0.98 16 30 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 31 H 0.07 2.42 6.95 -2.39 -0.02 2.41 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.36 10.33 7.55 -89.70 -0.68 9.65 16 34 H 0.34 11.35 8.58 -89.69 -0.77 10.58 16 35 H 0.10 2.01 4.82 -2.39 -0.01 2.00 16 36 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.32 -1.20 8.06 -2.91 -0.02 -1.22 16 42 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 43 H 0.07 2.10 7.00 -2.39 -0.02 2.09 16 Total: -1.00 -77.75 347.75 -0.17 -77.91 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.45 Total: 28.47 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 5.65 Total: -2.21 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -8.05 Total: -127.23 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: 0.80 Total: -20.73 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.88 Total: 43.79 kcal Total: -77.75 -0.17 -77.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.703 kcal (2) G-P(sol) polarization free energy of solvation -77.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds