Wall clock time and date at job start Fri Apr 10 2020 22:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47346 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47343 * 179.97438 * 11 10 9 13 13 H 1.08994 * 109.47265 * 305.00126 * 12 11 10 14 14 N 1.46900 * 109.46820 * 65.00005 * 12 11 10 15 15 C 1.50696 * 109.46981 * 184.99623 * 12 11 10 16 16 O 1.21275 * 120.00574 * 260.00182 * 15 12 11 17 17 N 1.34783 * 119.99458 * 80.00533 * 15 12 11 18 18 C 1.47016 * 125.64947 * 0.02562 * 17 15 12 19 19 C 1.54329 * 107.26777 * 181.02398 * 18 17 15 20 20 C 1.55157 * 102.94479 * 22.19301 * 19 18 17 21 21 H 1.09003 * 111.00243 * 82.57243 * 20 19 18 22 22 C 1.50692 * 111.00419 * 206.42573 * 20 19 18 23 23 N 1.34504 * 126.28517 * 238.26104 * 22 20 19 24 24 C 1.31131 * 105.61338 * 179.90566 * 23 22 20 25 25 O 1.33648 * 106.89875 * 0.34591 * 24 23 22 26 26 N 1.21298 * 109.80861 * 359.77351 * 25 24 23 27 27 C 1.47429 * 125.64222 * 179.71414 * 17 15 12 28 28 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 30 30 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 31 31 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 32 32 H 1.09004 * 109.47253 * 59.99496 * 10 9 7 33 33 H 1.09000 * 109.46870 * 299.99817 * 11 10 9 34 34 H 1.09004 * 109.47108 * 59.99711 * 11 10 9 35 35 H 1.00900 * 111.00092 * 296.04744 * 14 12 11 36 36 H 1.00904 * 110.99890 * 60.00078 * 14 12 11 37 37 H 1.09003 * 109.88101 * 300.43630 * 18 17 15 38 38 H 1.08995 * 109.88398 * 61.60971 * 18 17 15 39 39 H 1.09005 * 110.71948 * 140.55312 * 19 18 17 40 40 H 1.08992 * 110.72083 * 263.82847 * 19 18 17 41 41 H 1.07998 * 126.55143 * 180.12531 * 24 23 22 42 42 H 1.08994 * 110.36693 * 274.73956 * 27 17 15 43 43 H 1.08996 * 110.36970 * 37.07229 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 6 2.4745 -6.1501 -0.0024 13 1 3.1587 -6.0429 -0.8441 14 7 3.2375 -6.1423 1.2529 15 6 1.7251 -7.4515 -0.1267 16 8 1.5127 -8.1256 0.8589 17 7 1.2909 -7.8665 -1.3333 18 6 1.4792 -7.1516 -2.6040 19 6 0.7957 -7.9883 -3.7060 20 6 -0.2268 -8.8420 -2.9104 21 1 -1.1391 -8.2780 -2.7157 22 6 -0.5335 -10.1289 -3.6320 23 7 -1.7463 -10.5430 -4.0402 24 6 -1.5470 -11.7032 -4.6180 25 8 -0.2375 -11.9578 -4.5368 26 7 0.3243 -11.0448 -3.9692 27 6 0.5542 -9.1157 -1.5982 28 1 -0.4850 -0.8401 -0.0004 29 1 0.6241 -2.5574 0.8881 30 1 0.6247 -2.5564 -0.8919 31 1 2.8726 -3.6039 -0.8910 32 1 2.8713 -3.6047 0.8890 33 1 0.8533 -5.0450 0.8877 34 1 0.8540 -5.0447 -0.8923 35 1 3.7992 -5.3076 1.3295 36 1 2.6252 -6.2404 2.0489 37 1 1.0173 -6.1659 -2.5468 38 1 2.5430 -7.0528 -2.8197 39 1 0.2854 -7.3420 -4.4203 40 1 1.5206 -8.6264 -4.2112 41 1 -2.2981 -12.3343 -5.0696 42 1 1.2490 -9.9445 -1.7335 43 1 -0.1374 -9.3284 -0.7830 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580049170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:06:34 Heat of formation + Delta-G solvation = -7.208421 kcal Electronic energy + Delta-G solvation = -24998.160457 eV Core-core repulsion = 21272.876564 eV Total energy + Delta-G solvation = -3725.283893 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.66668 -41.47188 -39.16132 -37.55236 -36.77501 -35.60403 -34.06299 -32.93806 -32.26704 -30.42529 -29.24538 -27.23316 -25.53094 -25.17517 -24.33412 -23.63936 -22.05186 -21.83630 -20.37483 -19.13810 -19.05477 -18.92515 -18.56600 -17.38606 -16.94124 -16.65693 -16.27644 -15.87067 -15.65711 -15.53122 -15.16893 -14.98357 -14.78335 -14.54079 -14.22889 -13.93387 -13.75343 -13.48915 -13.43782 -13.25813 -12.85100 -12.74693 -12.63225 -12.47498 -12.35253 -12.20609 -11.98706 -11.90904 -11.74413 -11.60213 -11.11889 -10.99276 -10.66778 -10.54876 -9.91272 -9.75233 -8.68825 -6.39902 0.23857 1.15496 1.41396 1.53009 1.61103 1.66018 1.80085 2.18624 2.56892 2.65796 3.03283 3.15615 3.15745 3.46317 3.53721 3.59950 3.79559 3.85934 3.93506 4.05296 4.07621 4.27951 4.29710 4.39882 4.43238 4.57784 4.64513 4.67259 4.75869 4.78306 4.85612 4.95521 5.00443 5.03199 5.04486 5.11502 5.40542 5.49649 5.93087 5.99472 6.18835 6.27940 6.39268 6.57373 6.95573 7.18264 7.42644 8.71818 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020670 B = 0.002529 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.292733 B =11070.251357 C =11934.858533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.042 4.042 3 Si 1.117 2.883 4 H -0.286 1.286 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.617 4.617 8 H 0.055 0.945 9 C 0.008 3.992 10 C -0.087 4.087 11 C -0.134 4.134 12 C 0.091 3.909 13 H 0.121 0.879 14 N -0.833 5.833 15 C 0.538 3.462 16 O -0.572 6.572 17 N -0.617 5.617 18 C 0.091 3.909 19 C -0.109 4.109 20 C -0.010 4.010 21 H 0.120 0.880 22 C 0.170 3.830 23 N -0.519 5.519 24 C 0.188 3.812 25 O 0.078 5.922 26 N -0.398 5.398 27 C 0.121 3.879 28 H 0.254 0.746 29 H -0.020 1.020 30 H -0.009 1.009 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.358 0.642 36 H 0.346 0.654 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.318 0.682 42 H 0.069 0.931 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 -23.786 -13.101 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.239 4.239 3 Si 0.938 3.062 4 H -0.212 1.212 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.655 4.655 8 H 0.073 0.927 9 C -0.029 4.029 10 C -0.125 4.125 11 C -0.174 4.174 12 C -0.024 4.024 13 H 0.139 0.861 14 N -0.365 5.365 15 C 0.327 3.673 16 O -0.450 6.450 17 N -0.351 5.351 18 C -0.031 4.031 19 C -0.148 4.148 20 C -0.031 4.031 21 H 0.138 0.862 22 C -0.102 4.102 23 N -0.251 5.251 24 C -0.052 4.052 25 O 0.019 5.981 26 N -0.105 5.105 27 C -0.003 4.003 28 H 0.064 0.936 29 H -0.001 1.001 30 H 0.009 0.991 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.174 0.826 36 H 0.159 0.841 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.130 0.870 40 H 0.104 0.896 41 H 0.333 0.667 42 H 0.087 0.913 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.432 -22.736 -12.454 25.927 hybrid contribution -1.065 -1.048 0.384 1.543 sum -0.634 -23.784 -12.070 26.679 Atomic orbital electron populations 1.70927 1.08074 1.29810 1.48985 1.27455 0.96604 1.07036 0.92837 0.82945 0.74126 0.71036 0.78137 1.21180 1.19480 1.19052 1.22523 0.94854 0.93360 1.54768 0.92706 1.19172 0.95149 0.94667 0.93914 1.21313 0.97681 0.92011 1.01448 1.22238 0.98384 0.94354 1.02437 1.21317 0.95025 0.89612 0.96436 0.86126 1.58692 1.28185 1.46430 1.03206 1.20586 0.78286 0.87233 0.81216 1.90649 1.58419 1.58223 1.37749 1.48428 1.56354 1.22846 1.07499 1.22406 1.02752 0.96534 0.81385 1.22728 0.97020 0.98105 0.96924 1.20648 1.00664 0.88934 0.92812 0.86229 1.25416 0.84885 0.98753 1.01191 1.71905 1.24428 1.12332 1.16424 1.31672 0.86125 0.93123 0.94231 1.85300 1.22229 1.36100 1.54507 1.74640 1.22500 0.99286 1.14055 1.22140 0.94717 0.87174 0.96248 0.93622 1.00134 0.99075 0.91598 0.92645 0.93335 0.90794 0.82570 0.84078 0.89678 0.88856 0.87034 0.89571 0.66740 0.91299 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.43 13.65 21.45 0.29 -58.14 16 2 C -0.04 -2.43 5.46 84.66 0.46 -1.97 16 3 Si 1.12 49.59 29.90 68.60 2.05 51.64 16 4 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.62 -34.50 9.11 25.60 0.23 -34.27 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 9 C 0.01 0.40 4.28 29.85 0.13 0.53 16 10 C -0.09 -3.23 4.92 30.59 0.15 -3.08 16 11 C -0.13 -4.21 4.83 30.59 0.15 -4.06 16 12 C 0.09 2.51 2.62 44.17 0.12 2.62 16 13 H 0.12 2.83 7.52 -2.39 -0.02 2.81 16 14 N -0.83 -23.46 8.94 -171.81 -1.54 -25.00 16 15 C 0.54 16.30 7.10 87.65 0.62 16.92 16 16 O -0.57 -21.64 16.50 -3.01 -0.05 -21.69 16 17 N -0.62 -14.91 3.32 -811.35 -2.70 -17.61 16 18 C 0.09 1.59 6.18 86.73 0.54 2.12 16 19 C -0.11 -1.58 6.40 31.78 0.20 -1.38 16 20 C -0.01 -0.18 3.59 -10.07 -0.04 -0.21 16 21 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 22 C 0.17 3.12 6.88 138.46 0.95 4.07 16 23 N -0.52 -8.25 11.55 -315.35 -3.64 -11.90 16 24 C 0.19 1.32 13.40 130.51 1.75 3.07 16 25 O 0.08 1.00 11.31 74.79 0.85 1.84 16 26 N -0.40 -7.37 11.87 -60.37 -0.72 -8.09 16 27 C 0.12 2.75 6.37 86.93 0.55 3.31 16 28 H 0.25 16.00 7.22 -92.71 -0.67 15.33 16 29 H -0.02 -1.08 8.01 -2.39 -0.02 -1.10 16 30 H -0.01 -0.48 8.01 -2.39 -0.02 -0.50 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.05 2.01 6.87 -2.38 -0.02 1.99 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 2.20 6.61 -2.38 -0.02 2.18 16 35 H 0.36 9.19 7.55 -89.69 -0.68 8.51 16 36 H 0.35 10.33 8.58 -89.69 -0.77 9.56 16 37 H 0.08 1.48 6.69 -2.39 -0.02 1.47 16 38 H 0.09 1.38 7.93 -2.39 -0.02 1.36 16 39 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.09 1.25 7.97 -2.39 -0.02 1.24 16 41 H 0.32 -2.09 8.06 -2.91 -0.02 -2.11 16 42 H 0.07 1.65 7.85 -2.39 -0.02 1.63 16 43 H 0.07 1.77 8.03 -2.39 -0.02 1.75 16 Total: -1.00 -79.63 356.72 0.07 -79.56 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -0.30 Total: 21.71 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 5.82 Total: -12.33 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -8.30 Total: -120.73 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.80 Total: -19.85 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.05 Total: 51.64 kcal Total: -79.63 0.07 -79.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580049170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.351 kcal (2) G-P(sol) polarization free energy of solvation -79.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds