Wall clock time and date at job start Fri Apr 10 2020 22:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47170 * 54.99895 * 11 10 9 13 13 N 1.46901 * 109.47143 * 294.99574 * 11 10 9 14 14 C 1.50700 * 109.46738 * 175.00110 * 11 10 9 15 15 O 1.21283 * 120.00142 * 100.00354 * 14 11 10 16 16 N 1.34775 * 120.00303 * 279.99439 * 14 11 10 17 17 C 1.46496 * 120.00555 * 180.02562 * 16 14 11 18 18 C 1.50700 * 109.47288 * 179.97438 * 17 16 14 19 19 C 1.34970 * 126.67402 * 95.02848 * 18 17 16 20 20 N 1.34410 * 108.09714 * 179.97438 * 19 18 17 21 21 C 1.29773 * 109.18033 * 359.96376 * 20 19 18 22 22 N 1.35729 * 108.61470 * 359.81942 * 21 20 19 23 23 C 1.46541 * 123.52997 * 179.47635 * 22 21 20 24 24 C 1.53468 * 108.17336 * 344.25751 * 23 22 21 25 25 O 1.43034 * 109.67172 * 48.05044 * 24 23 22 26 26 C 1.43455 * 114.06235 * 289.88126 * 25 24 23 27 27 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.00902 * 111.00138 * 300.00948 * 13 11 10 33 33 H 1.00908 * 110.99704 * 63.95534 * 13 11 10 34 34 H 0.97005 * 119.99246 * 0.02562 * 16 14 11 35 35 H 1.08992 * 109.47266 * 300.00471 * 17 16 14 36 36 H 1.09001 * 109.46731 * 60.00326 * 17 16 14 37 37 H 1.08003 * 125.95669 * 359.97074 * 19 18 17 38 38 H 1.08999 * 109.89610 * 224.47243 * 23 22 21 39 39 H 1.09001 * 109.54701 * 103.84396 * 23 22 21 40 40 H 1.09000 * 109.43884 * 287.99135 * 24 23 22 41 41 H 1.09003 * 109.40751 * 168.09254 * 24 23 22 42 42 H 1.08995 * 109.79839 * 290.04760 * 26 25 24 43 43 H 1.09006 * 109.84204 * 169.21695 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 1 5.9142 -2.0465 0.8452 13 7 6.0423 -2.0518 -1.2517 14 6 6.0539 -4.0517 0.1285 15 8 6.4288 -4.6514 -0.8568 16 7 6.0866 -4.6512 1.3351 17 6 6.5753 -6.0268 1.4567 18 6 6.5095 -6.4577 2.8994 19 6 5.5084 -7.1424 3.4913 20 7 5.8351 -7.3274 4.7819 21 6 6.9930 -6.7877 5.0102 22 7 7.4495 -6.2374 3.8564 23 6 8.7284 -5.5304 3.7474 24 6 9.2112 -5.1930 5.1646 25 8 9.1156 -6.3538 5.9949 26 6 7.7698 -6.7421 6.3047 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.6799 0.8911 29 1 3.8752 -0.6803 -0.8888 30 1 3.6587 -3.1509 -0.8875 31 1 3.6580 -3.1497 0.8925 32 1 5.7193 -2.5811 -2.0477 33 1 5.7729 -1.0824 -1.3287 34 1 5.7864 -4.1716 2.1231 35 1 5.9551 -6.6876 0.8512 36 1 7.6072 -6.0778 1.1094 37 1 4.6024 -7.4825 3.0117 38 1 8.5970 -4.6121 3.1750 39 1 9.4584 -6.1711 3.2526 40 1 8.5912 -4.3983 5.5794 41 1 10.2484 -4.8603 5.1243 42 1 7.3211 -6.0128 6.9790 43 1 7.7672 -7.7271 6.7717 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580049673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:06:44 Heat of formation + Delta-G solvation = -49.808856 kcal Electronic energy + Delta-G solvation = -25160.414994 eV Core-core repulsion = 21433.283807 eV Total energy + Delta-G solvation = -3727.131187 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.58267 -40.93106 -39.31732 -37.25481 -36.20282 -35.06888 -34.81756 -32.09547 -32.06417 -30.95512 -29.11249 -27.87084 -26.09733 -24.93656 -24.60470 -22.26901 -22.08552 -21.23568 -20.41139 -19.20747 -18.67495 -18.31113 -17.47708 -17.38653 -16.57730 -16.42660 -16.27283 -16.22459 -15.96686 -15.91364 -15.49995 -15.24999 -14.85440 -14.58815 -14.48425 -14.39350 -14.08124 -13.81875 -13.59327 -13.49554 -13.05972 -12.89990 -12.67538 -12.27738 -12.09950 -11.92351 -11.67257 -11.41789 -11.33184 -11.11204 -10.90766 -10.77928 -10.66466 -10.24074 -9.69526 -9.44780 -8.30480 -6.36387 0.65834 1.37859 1.39441 1.48880 1.50734 1.56246 1.82714 2.28107 2.35639 2.64031 3.05146 3.07651 3.30986 3.45674 3.71683 3.74780 3.89756 3.95348 4.04477 4.08730 4.17721 4.24958 4.32447 4.44031 4.50019 4.56280 4.58751 4.62297 4.72374 4.75604 4.93554 5.16296 5.24714 5.35731 5.46073 5.55525 5.62066 5.75652 6.00477 6.04467 6.24428 6.41845 6.48391 6.72660 6.89016 7.13951 7.28587 8.86467 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016351 B = 0.002919 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.074705 B = 9590.024971 C = 9987.447560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.236 1.236 7 C -0.536 4.536 8 H 0.025 0.975 9 C -0.005 4.005 10 C -0.119 4.119 11 C 0.082 3.918 12 H 0.120 0.880 13 N -0.829 5.829 14 C 0.530 3.470 15 O -0.566 6.566 16 N -0.717 5.717 17 C 0.208 3.792 18 C -0.031 4.031 19 C -0.022 4.022 20 N -0.508 5.508 21 C 0.166 3.834 22 N -0.446 5.446 23 C 0.060 3.940 24 C 0.047 3.953 25 O -0.382 6.382 26 C 0.151 3.849 27 H 0.266 0.734 28 H 0.031 0.969 29 H 0.025 0.975 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.346 0.654 33 H 0.355 0.645 34 H 0.410 0.590 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.180 0.820 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.149 0.851 42 H 0.102 0.898 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.958 -9.488 11.978 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.158 1.158 7 C -0.574 4.574 8 H 0.043 0.957 9 C -0.043 4.043 10 C -0.159 4.159 11 C -0.033 4.033 12 H 0.137 0.863 13 N -0.361 5.361 14 C 0.317 3.683 15 O -0.444 6.444 16 N -0.371 5.371 17 C 0.084 3.916 18 C -0.147 4.147 19 C -0.171 4.171 20 N -0.228 5.228 21 C -0.097 4.097 22 N -0.130 5.130 23 C -0.061 4.061 24 C -0.030 4.030 25 O -0.299 6.299 26 C 0.073 3.927 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.246 0.754 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.198 0.802 38 H 0.132 0.868 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.166 0.834 42 H 0.120 0.880 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 23.702 -10.405 12.155 28.597 hybrid contribution -1.726 1.276 -0.907 2.330 sum 21.976 -9.129 11.248 26.321 Atomic orbital electron populations 1.70087 1.08618 1.28259 1.52481 1.26114 0.95630 1.03887 0.93961 0.85587 0.79741 0.77609 0.79256 1.19214 1.21495 1.15849 1.21461 0.92325 0.92885 1.50738 0.95650 1.19494 0.93701 0.93861 0.97224 1.22025 0.93620 0.98699 1.01579 1.21418 0.93147 0.92284 0.96428 0.86264 1.58772 1.66365 1.07704 1.03276 1.20724 0.76474 0.88558 0.82583 1.90653 1.48883 1.66680 1.38190 1.45989 1.66409 1.14904 1.09763 1.19413 1.00971 0.83081 0.88154 1.20891 0.92585 1.08589 0.92599 1.22610 1.00580 1.03684 0.90252 1.69920 1.12849 1.22789 1.17241 1.24580 0.93682 0.99799 0.91684 1.45327 1.17014 1.42002 1.08648 1.23059 0.82159 0.99020 1.01858 1.23224 1.05680 0.87620 0.86472 1.88157 1.25332 1.47043 1.69383 1.21444 0.79407 1.04492 0.87404 0.92526 0.95046 0.95706 0.93857 0.91953 0.84123 0.82976 0.75376 0.89290 0.90269 0.80244 0.86773 0.88000 0.90640 0.83376 0.87990 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 2 C 0.00 0.04 5.47 84.65 0.46 0.50 16 3 Si 0.96 41.99 27.47 68.60 1.88 43.87 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 7 C -0.54 -29.85 9.66 25.60 0.25 -29.60 16 8 H 0.03 1.59 7.99 -2.91 -0.02 1.56 16 9 C -0.01 -0.22 3.81 29.85 0.11 -0.11 16 10 C -0.12 -4.22 4.78 30.59 0.15 -4.07 16 11 C 0.08 2.30 3.21 44.17 0.14 2.45 16 12 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 13 N -0.83 -23.46 8.94 -171.81 -1.54 -25.00 16 14 C 0.53 14.78 7.08 87.66 0.62 15.40 16 15 O -0.57 -19.51 16.25 -3.04 -0.05 -19.56 16 16 N -0.72 -15.32 5.55 -466.80 -2.59 -17.91 16 17 C 0.21 4.11 6.03 85.63 0.52 4.63 16 18 C -0.03 -0.62 6.37 41.17 0.26 -0.36 16 19 C -0.02 -0.51 11.81 83.55 0.99 0.48 16 20 N -0.51 -12.67 11.24 -187.31 -2.10 -14.78 16 21 C 0.17 3.26 7.79 138.23 1.08 4.34 16 22 N -0.45 -7.73 3.14 -499.03 -1.57 -9.30 16 23 C 0.06 0.61 7.14 86.53 0.62 1.23 16 24 C 0.05 0.34 6.82 72.14 0.49 0.83 16 25 O -0.38 -4.70 10.79 -148.98 -1.61 -6.31 16 26 C 0.15 1.92 7.29 71.34 0.52 2.44 16 27 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 28 H 0.03 1.25 7.20 -2.39 -0.02 1.23 16 29 H 0.02 0.99 6.30 -2.39 -0.02 0.97 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.35 10.37 8.58 -89.69 -0.77 9.60 16 33 H 0.35 9.47 7.55 -89.69 -0.68 8.79 16 34 H 0.41 7.70 8.46 -92.70 -0.78 6.91 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.18 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.48 8.09 -2.39 -0.02 0.46 16 41 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -76.28 357.30 -2.30 -78.58 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: -1.23 Total: 31.21 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 6.20 Total: -1.85 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -7.50 Total: -125.94 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -1.66 Total: -25.87 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.88 Total: 43.87 kcal Total: -76.28 -2.30 -78.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580049673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.773 kcal (2) G-P(sol) polarization free energy of solvation -76.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds