Wall clock time and date at job start Fri Apr 10 2020 22:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99681 * 2 1 4 4 H 1.48501 * 109.46789 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47249 * 300.00161 * 3 2 1 6 6 H 1.48504 * 109.46892 * 60.00166 * 3 2 1 7 7 C 1.37879 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00007 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99628 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47067 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47223 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.46933 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.48050 * 54.99727 * 12 11 10 14 14 N 1.46900 * 109.47254 * 294.99443 * 12 11 10 15 15 C 1.50707 * 109.47267 * 175.00046 * 12 11 10 16 16 O 1.21279 * 120.00346 * 99.99396 * 15 12 11 17 17 N 1.34775 * 119.99634 * 279.99836 * 15 12 11 18 18 C 1.46498 * 120.00163 * 180.02562 * 17 15 12 19 19 C 1.50698 * 109.47463 * 179.97438 * 18 17 15 20 20 N 1.30275 * 126.28506 * 89.99666 * 19 18 17 21 21 N 1.28664 * 109.38152 * 179.73391 * 20 19 18 22 22 C 1.30270 * 109.38100 * 0.44292 * 21 20 19 23 23 C 1.50706 * 126.28141 * 179.82649 * 22 21 20 24 24 C 1.53002 * 117.49668 * 59.69285 * 23 22 21 25 25 C 1.53000 * 60.02940 * 252.51929 * 24 23 22 26 26 O 1.34358 * 126.28173 * 269.99833 * 19 18 17 27 27 H 0.96999 * 120.00120 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47405 * 60.00200 * 9 7 2 29 29 H 1.09004 * 109.47418 * 299.99911 * 9 7 2 30 30 H 1.08995 * 109.46960 * 59.99787 * 10 9 7 31 31 H 1.09004 * 109.46814 * 300.00140 * 10 9 7 32 32 H 1.08995 * 109.47488 * 59.99913 * 11 10 9 33 33 H 1.09002 * 109.46704 * 299.99498 * 11 10 9 34 34 H 1.00900 * 111.00156 * 300.00728 * 14 12 11 35 35 H 1.00904 * 111.00090 * 63.95303 * 14 12 11 36 36 H 0.97004 * 120.00293 * 359.97438 * 17 15 12 37 37 H 1.09000 * 109.47554 * 59.99579 * 18 17 15 38 38 H 1.09001 * 109.46994 * 299.99697 * 18 17 15 39 39 H 1.09000 * 115.55924 * 205.37690 * 23 22 21 40 40 H 1.09002 * 117.49918 * 145.01964 * 24 23 22 41 41 H 1.09002 * 117.49754 * 0.02562 * 24 23 22 42 42 H 1.09008 * 117.49673 * 107.47884 * 25 24 23 43 43 H 1.08999 * 117.49942 * 252.47315 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0005 13 1 3.1583 -6.0432 0.8417 14 7 3.2386 -6.1417 -1.2552 15 6 1.7253 -7.4516 0.1227 16 8 1.5137 -8.1252 -0.8634 17 7 1.2902 -7.8671 1.3287 18 6 0.5622 -9.1327 1.4487 19 6 0.1912 -9.3641 2.8908 20 7 -0.9055 -8.9752 3.4767 21 7 -0.8881 -9.3499 4.7074 22 6 0.2245 -9.9823 4.9511 23 6 0.6402 -10.5795 6.2708 24 6 -0.2621 -11.6583 6.8735 25 6 -0.2229 -10.2604 7.4941 26 8 0.9307 -10.0094 3.8084 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 2.8721 -3.6043 0.8894 31 1 2.8721 -3.6043 -0.8906 32 1 0.8541 -5.0447 -0.8913 33 1 0.8536 -5.0451 0.8887 34 1 2.6269 -6.2394 -2.0517 35 1 3.8004 -5.3069 -1.3312 36 1 1.4598 -7.3285 2.1175 37 1 1.1942 -9.9499 1.1009 38 1 -0.3428 -9.0901 0.8426 39 1 1.7147 -10.6785 6.4246 40 1 0.2189 -12.4670 7.4238 41 1 -1.1561 -11.9363 6.3152 42 1 -1.0910 -9.6185 7.3438 43 1 0.2835 -10.1494 8.4529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580050431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:06:47 Heat of formation + Delta-G solvation = -14.567766 kcal Electronic energy + Delta-G solvation = -24121.603294 eV Core-core repulsion = 20396.000276 eV Total energy + Delta-G solvation = -3725.603018 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.50507 -41.07865 -38.43969 -37.54002 -37.41858 -36.34382 -35.28172 -33.01418 -32.59971 -29.73349 -28.77056 -26.65488 -25.99990 -24.38898 -23.54748 -23.27719 -22.36465 -21.92630 -21.39517 -18.95220 -18.77197 -18.47935 -18.27834 -17.52341 -16.92853 -16.54292 -16.46721 -16.13280 -16.06645 -15.72732 -15.07865 -15.03949 -14.69376 -14.29315 -14.21934 -13.70116 -13.68340 -13.66761 -13.50534 -13.13668 -12.94405 -12.58665 -12.48285 -12.42179 -12.37872 -12.36384 -12.14625 -11.61035 -11.51429 -11.46174 -11.29007 -10.95450 -10.57772 -10.52595 -10.42151 -9.69095 -8.21290 -6.32669 -0.22677 0.87938 1.01995 1.39431 1.39770 1.46500 1.52986 2.01380 2.39911 2.50480 2.72263 3.12229 3.20450 3.49514 3.58493 3.67071 3.76198 3.90407 3.95134 3.98127 4.04648 4.07503 4.31207 4.36508 4.41322 4.47200 4.55278 4.72907 4.75097 4.86024 4.99674 5.03189 5.03766 5.18410 5.18568 5.23111 5.51501 5.72108 5.84505 6.00714 6.22634 6.27160 6.49166 6.85947 7.01043 7.03046 7.37264 8.90593 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014358 B = 0.002380 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.617584 B =11759.957291 C =13121.524320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.022 3.978 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.087 3.913 13 H 0.124 0.876 14 N -0.830 5.830 15 C 0.534 3.466 16 O -0.557 6.557 17 N -0.722 5.722 18 C 0.226 3.774 19 C 0.150 3.850 20 N -0.290 5.290 21 N -0.320 5.320 22 C 0.212 3.788 23 C -0.104 4.104 24 C -0.138 4.138 25 C -0.141 4.141 26 O -0.216 6.216 27 H 0.262 0.738 28 H -0.014 1.014 29 H -0.011 1.011 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.347 0.653 35 H 0.358 0.642 36 H 0.414 0.586 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.165 0.835 40 H 0.142 0.858 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.870 -25.334 13.700 29.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.790 3.210 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.083 0.917 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.177 4.177 12 C -0.028 4.028 13 H 0.142 0.858 14 N -0.363 5.363 15 C 0.321 3.679 16 O -0.434 6.434 17 N -0.377 5.377 18 C 0.102 3.898 19 C -0.062 4.062 20 N -0.138 5.138 21 N -0.166 5.166 22 C 0.002 3.998 23 C -0.124 4.124 24 C -0.176 4.176 25 C -0.178 4.178 26 O -0.095 6.095 27 H 0.071 0.929 28 H 0.004 0.996 29 H 0.007 0.993 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.174 0.826 36 H 0.250 0.750 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.182 0.818 40 H 0.160 0.840 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.774 -25.849 13.424 29.370 hybrid contribution 0.302 1.811 -0.311 1.862 sum 4.076 -24.037 13.113 27.683 Atomic orbital electron populations 1.70115 1.07917 1.27661 1.51931 1.26031 0.95750 1.03565 0.94891 0.85396 0.79244 0.78764 0.77630 1.18209 1.20632 1.20543 1.21760 0.93701 0.92251 1.50053 0.91723 1.19023 0.94542 0.93444 0.94542 1.21433 0.97905 0.92466 1.01420 1.22253 0.98402 0.94586 1.02446 1.21351 0.95097 0.89531 0.96825 0.85821 1.58718 1.28013 1.46414 1.03119 1.20746 0.77942 0.87152 0.82018 1.90679 1.57454 1.57467 1.37788 1.45832 1.58187 1.23057 1.10642 1.19610 1.00025 0.88681 0.81518 1.27882 0.87770 0.95219 0.95314 1.74435 1.19805 1.18862 1.00650 1.74382 1.19551 1.14794 1.07840 1.27767 0.86762 0.96227 0.89074 1.20640 1.01442 1.07094 0.83202 1.23305 0.99806 0.93183 1.01319 1.23282 1.00691 0.98693 0.95113 1.84796 1.45832 1.59813 1.19085 0.92876 0.99600 0.99261 0.91824 0.92270 0.92938 0.91403 0.83946 0.82586 0.75014 0.86293 0.86428 0.81765 0.84005 0.89147 0.88849 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.33 13.29 21.45 0.28 -57.04 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.00 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 8 H 0.06 3.41 7.74 -2.92 -0.02 3.39 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.09 -3.49 4.92 30.60 0.15 -3.34 16 11 C -0.14 -4.19 4.84 30.59 0.15 -4.04 16 12 C 0.09 2.15 3.21 44.17 0.14 2.29 16 13 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 14 N -0.83 -20.91 8.94 -171.80 -1.54 -22.44 16 15 C 0.53 13.64 7.08 87.66 0.62 14.26 16 16 O -0.56 -17.62 16.25 -3.02 -0.05 -17.67 16 17 N -0.72 -14.57 5.55 -466.79 -2.59 -17.16 16 18 C 0.23 4.18 6.30 85.63 0.54 4.71 16 19 C 0.15 3.17 7.85 88.34 0.69 3.87 16 20 N -0.29 -7.70 12.22 -165.51 -2.02 -9.72 16 21 N -0.32 -8.00 11.84 -165.50 -1.96 -9.96 16 22 C 0.21 4.03 8.00 88.34 0.71 4.74 16 23 C -0.10 -1.05 6.33 -11.51 -0.07 -1.12 16 24 C -0.14 -0.91 10.23 30.60 0.31 -0.60 16 25 C -0.14 -1.11 10.15 30.62 0.31 -0.80 16 26 O -0.22 -4.24 10.87 -3.60 -0.04 -4.28 16 27 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 28 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 29 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.06 2.06 6.87 -2.38 -0.02 2.05 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.35 9.28 8.58 -89.69 -0.77 8.51 16 35 H 0.36 8.34 7.55 -89.69 -0.68 7.67 16 36 H 0.41 7.27 8.46 -92.71 -0.78 6.49 16 37 H 0.12 1.84 8.14 -2.39 -0.02 1.83 16 38 H 0.12 2.22 8.14 -2.39 -0.02 2.21 16 39 H 0.16 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 1.16 7.92 -2.38 -0.02 1.14 16 43 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -75.33 371.39 -2.66 -78.00 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -1.17 Total: 22.74 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 4.39 Total: -8.47 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -7.82 Total: -116.32 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.09 Total: -21.94 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -75.33 -2.66 -78.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.428 kcal (2) G-P(sol) polarization free energy of solvation -75.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds