Wall clock time and date at job start Fri Apr 10 2020 22:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 119.99566 * 2 1 4 4 O 1.21280 * 120.00423 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46992 * 179.97438 * 5 3 2 7 7 C 1.35815 * 126.05152 * 124.99881 * 6 5 3 8 8 C 1.35761 * 107.56531 * 179.97438 * 7 6 5 9 9 N 1.40759 * 126.08157 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99754 * 179.97438 * 9 8 7 11 11 O 1.21304 * 119.99862 * 359.97438 * 10 9 8 12 12 C 1.50698 * 119.99655 * 179.97438 * 10 9 8 13 13 C 1.53007 * 109.46854 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46885 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47104 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47516 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99443 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00220 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99928 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00038 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47426 * 90.00018 * 20 18 16 22 22 H 1.48500 * 109.47287 * 209.99943 * 20 18 16 23 23 H 1.48504 * 109.47036 * 330.00059 * 20 18 16 24 24 C 1.40256 * 107.83472 * 0.02562 * 8 7 6 25 25 N 1.30835 * 108.33822 * 359.75231 * 24 8 7 26 26 H 1.09002 * 109.47182 * 60.00342 * 1 2 3 27 27 H 1.09000 * 109.46891 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47487 * 300.00114 * 1 2 3 29 29 H 0.96995 * 120.00423 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 31 31 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 32 32 H 1.07999 * 126.22073 * 359.94688 * 7 6 5 33 33 H 0.96996 * 119.99994 * 359.97438 * 9 8 7 34 34 H 1.09000 * 109.47480 * 300.00088 * 12 10 9 35 35 H 1.08996 * 109.47356 * 60.00338 * 12 10 9 36 36 H 1.08994 * 109.46679 * 299.99951 * 13 12 10 37 37 H 1.08996 * 109.46999 * 59.99952 * 13 12 10 38 38 H 1.09000 * 109.47224 * 299.99784 * 14 13 12 39 39 H 1.09000 * 109.47652 * 59.99528 * 14 13 12 40 40 H 1.09002 * 109.47109 * 299.99475 * 15 14 13 41 41 H 1.09000 * 109.47280 * 59.99264 * 15 14 13 42 42 H 0.96997 * 119.99419 * 180.02562 * 19 18 16 43 43 H 1.08005 * 125.83005 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 -0.0006 6 7 4.1340 2.5486 -0.0011 7 6 4.9946 3.0925 0.8979 8 6 5.1912 4.3885 0.5446 9 7 6.0147 5.3141 1.2127 10 6 6.1209 6.5764 0.7527 11 8 5.5071 6.9147 -0.2374 12 6 7.0022 7.5675 1.4683 13 6 6.9441 8.9155 0.7468 14 6 7.8393 9.9216 1.4730 15 6 7.7808 11.2697 0.7519 16 6 8.6621 12.2609 1.4675 17 1 9.2088 11.9595 2.3488 18 6 8.7703 13.5524 0.9972 19 7 9.5390 14.4175 1.6220 20 14 7.8240 14.0739 -0.5266 21 1 6.4918 14.5950 -0.1279 22 1 8.5785 15.1367 -1.2383 23 1 7.6495 12.9045 -1.4252 24 6 4.4268 4.6413 -0.6039 25 7 3.7999 3.5407 -0.9317 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.9500 -0.8400 0.0004 30 1 4.0095 0.6534 0.8892 31 1 4.0089 0.6537 -0.8908 32 1 5.4409 2.5862 1.7410 33 1 6.5058 5.0434 2.0042 34 1 6.6536 7.6894 2.4939 35 1 8.0291 7.2023 1.4746 36 1 7.2924 8.7939 -0.2788 37 1 5.9171 9.2805 0.7409 38 1 7.4914 10.0432 2.4988 39 1 8.8663 9.5563 1.4786 40 1 8.1285 11.1484 -0.2740 41 1 6.7537 11.6347 0.7466 42 1 9.6148 15.3262 1.2913 43 1 4.3687 5.5827 -1.1300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588300824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:29 Heat of formation + Delta-G solvation = 0.932212 kcal Electronic energy + Delta-G solvation = -23720.251221 eV Core-core repulsion = 19995.320333 eV Total energy + Delta-G solvation = -3724.930889 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.58593 -40.07375 -39.38811 -35.30242 -35.12026 -34.74981 -33.31160 -32.53100 -30.41705 -29.77611 -28.39391 -26.35896 -25.56473 -22.68923 -22.07691 -21.14727 -20.95847 -20.01956 -19.88388 -18.13914 -17.66311 -16.90201 -16.63118 -16.41653 -16.06905 -15.83725 -15.50250 -15.07105 -14.30973 -14.24315 -14.14863 -13.93393 -13.78883 -13.61295 -13.01458 -12.84028 -12.72284 -12.61673 -12.41661 -12.06960 -11.71904 -11.10708 -11.00838 -10.85407 -10.71101 -10.51855 -10.49395 -9.91857 -9.77846 -9.73598 -9.61137 -9.52955 -9.40860 -9.08857 -8.46304 -7.88931 -5.97755 -3.95111 1.48752 1.94713 2.04484 2.39704 2.67776 3.07505 3.10204 3.38537 3.45473 3.51771 4.02828 4.13969 4.45172 4.47579 4.53204 4.66905 4.73801 4.96362 5.00077 5.19351 5.26786 5.30557 5.37492 5.38628 5.49856 5.74830 5.78953 6.03863 6.05567 6.17247 6.44165 6.55617 6.71459 6.76844 6.84851 6.86188 7.02453 7.31014 7.41824 7.54507 7.54896 7.64179 7.87911 8.17667 8.61190 9.07262 9.65847 11.15738 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.039537 B = 0.001820 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.031886 B =15385.131868 C =15792.443289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.737 5.737 3 C 0.494 3.506 4 O -0.501 6.501 5 C 0.127 3.873 6 N -0.370 5.370 7 C 0.007 3.993 8 C 0.015 3.985 9 N -0.651 5.651 10 C 0.514 3.486 11 O -0.523 6.523 12 C -0.135 4.135 13 C -0.107 4.107 14 C -0.103 4.103 15 C -0.016 4.016 16 C -0.520 4.520 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.906 5.906 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.264 1.264 24 C 0.051 3.949 25 N -0.258 5.258 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.402 0.598 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.176 0.824 33 H 0.409 0.591 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.016 0.984 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.453 -37.427 0.323 39.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.391 5.391 3 C 0.277 3.723 4 O -0.374 6.374 5 C 0.001 3.999 6 N -0.156 5.156 7 C -0.139 4.139 8 C -0.089 4.089 9 N -0.297 5.297 10 C 0.303 3.697 11 O -0.398 6.398 12 C -0.175 4.175 13 C -0.145 4.145 14 C -0.140 4.140 15 C -0.053 4.053 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.546 5.546 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.189 1.189 24 C -0.138 4.138 25 N -0.078 5.078 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.236 0.764 30 H 0.142 0.858 31 H 0.132 0.868 32 H 0.193 0.807 33 H 0.244 0.756 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -14.111 -36.821 -1.203 39.451 hybrid contribution 0.584 0.054 0.403 0.712 sum -13.527 -36.767 -0.800 39.185 Atomic orbital electron populations 1.21552 0.78976 1.02370 1.02646 1.45710 1.08080 1.08306 1.77007 1.20725 0.89954 0.84324 0.77287 1.90843 1.69428 1.30911 1.46185 1.21318 0.92329 0.80172 1.06099 1.47609 1.36543 1.09127 1.22283 1.21766 0.99873 0.93746 0.98471 1.17791 1.02515 0.89837 0.98774 1.43034 1.46236 1.09979 1.30460 1.21196 0.82157 0.81629 0.84748 1.90590 1.45506 1.77773 1.25933 1.21760 0.99480 0.95391 1.00844 1.21500 1.01563 0.91888 0.99552 1.21476 0.97973 0.95596 0.98986 1.19581 0.96710 0.92842 0.96204 1.21193 1.26926 0.94605 1.13030 0.91114 1.25037 0.95051 0.96606 0.96891 1.69923 1.39302 1.04782 1.40565 0.86777 0.80106 0.78509 0.83929 1.20321 1.21483 1.18861 1.24619 0.94855 0.98374 0.95916 1.77512 1.21220 0.96323 1.12773 0.92009 0.90415 0.92124 0.76425 0.85789 0.86849 0.80677 0.75555 0.88701 0.88690 0.91637 0.91633 0.92841 0.92809 0.96582 0.97020 0.92846 0.77650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.37 10.70 59.85 0.64 1.01 16 2 N -0.74 -2.93 5.71 -67.08 -0.38 -3.31 16 3 C 0.49 3.90 7.86 -10.98 -0.09 3.81 16 4 O -0.50 -6.96 15.72 5.56 0.09 -6.87 16 5 C 0.13 0.65 7.00 -5.19 -0.04 0.61 16 6 N -0.37 -3.72 3.42 -62.20 -0.21 -3.93 16 7 C 0.01 0.06 11.52 -16.68 -0.19 -0.13 16 8 C 0.02 0.18 6.90 -83.88 -0.58 -0.40 16 9 N -0.65 -6.63 5.47 -10.04 -0.05 -6.68 16 10 C 0.51 6.79 7.80 -10.99 -0.09 6.71 16 11 O -0.52 -8.91 13.14 5.54 0.07 -8.84 16 12 C -0.13 -1.62 5.70 -27.88 -0.16 -1.78 16 13 C -0.11 -1.77 4.50 -26.73 -0.12 -1.89 16 14 C -0.10 -2.01 5.15 -26.73 -0.14 -2.14 16 15 C -0.02 -0.39 4.04 -27.88 -0.11 -0.51 16 16 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 17 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 18 C 0.06 1.94 5.47 -17.82 -0.10 1.85 16 19 N -0.91 -28.55 13.96 55.43 0.77 -27.77 16 20 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 24 C 0.05 0.74 10.84 -17.22 -0.19 0.56 16 25 N -0.26 -3.69 11.64 30.71 0.36 -3.34 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.40 0.00 8.83 -40.82 -0.36 -0.36 16 30 H 0.12 0.09 8.07 -51.93 -0.42 -0.33 16 31 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.41 2.55 8.83 -40.82 -0.36 2.19 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 37 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 41 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.21 3.28 5.92 -52.48 -0.31 2.96 16 LS Contribution 366.54 15.07 5.52 5.52 Total: -1.00 -41.49 366.54 -6.44 -47.93 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -6.45 Total: -2.78 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -1.49 Total: -7.83 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.48 Total: -45.03 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.16 Total: -15.71 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -41.49 -6.44 -47.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588300824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.867 kcal (2) G-P(sol) polarization free energy of solvation -41.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds