Wall clock time and date at job start Fri Apr 10 2020 22:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 119.99566 * 2 1 4 4 O 1.21280 * 120.00423 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46992 * 179.97438 * 5 3 2 7 7 C 1.35815 * 126.05152 * 124.99881 * 6 5 3 8 8 C 1.35761 * 107.56531 * 179.97438 * 7 6 5 9 9 N 1.40759 * 126.08157 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99754 * 179.97438 * 9 8 7 11 11 O 1.21304 * 119.99862 * 359.97438 * 10 9 8 12 12 C 1.50698 * 119.99655 * 179.97438 * 10 9 8 13 13 C 1.53007 * 109.46854 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46885 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47104 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47516 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99443 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00220 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99928 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00038 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47426 * 90.00018 * 20 18 16 22 22 H 1.48500 * 109.47287 * 209.99943 * 20 18 16 23 23 H 1.48504 * 109.47036 * 330.00059 * 20 18 16 24 24 C 1.40256 * 107.83472 * 0.02562 * 8 7 6 25 25 N 1.30835 * 108.33822 * 359.75231 * 24 8 7 26 26 H 1.09002 * 109.47182 * 60.00342 * 1 2 3 27 27 H 1.09000 * 109.46891 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47487 * 300.00114 * 1 2 3 29 29 H 0.96995 * 120.00423 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 31 31 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 32 32 H 1.07999 * 126.22073 * 359.94688 * 7 6 5 33 33 H 0.96996 * 119.99994 * 359.97438 * 9 8 7 34 34 H 1.09000 * 109.47480 * 300.00088 * 12 10 9 35 35 H 1.08996 * 109.47356 * 60.00338 * 12 10 9 36 36 H 1.08994 * 109.46679 * 299.99951 * 13 12 10 37 37 H 1.08996 * 109.46999 * 59.99952 * 13 12 10 38 38 H 1.09000 * 109.47224 * 299.99784 * 14 13 12 39 39 H 1.09000 * 109.47652 * 59.99528 * 14 13 12 40 40 H 1.09002 * 109.47109 * 299.99475 * 15 14 13 41 41 H 1.09000 * 109.47280 * 59.99264 * 15 14 13 42 42 H 0.96997 * 119.99419 * 180.02562 * 19 18 16 43 43 H 1.08005 * 125.83005 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 -0.0006 6 7 4.1340 2.5486 -0.0011 7 6 4.9946 3.0925 0.8979 8 6 5.1912 4.3885 0.5446 9 7 6.0147 5.3141 1.2127 10 6 6.1209 6.5764 0.7527 11 8 5.5071 6.9147 -0.2374 12 6 7.0022 7.5675 1.4683 13 6 6.9441 8.9155 0.7468 14 6 7.8393 9.9216 1.4730 15 6 7.7808 11.2697 0.7519 16 6 8.6621 12.2609 1.4675 17 1 9.2088 11.9595 2.3488 18 6 8.7703 13.5524 0.9972 19 7 9.5390 14.4175 1.6220 20 14 7.8240 14.0739 -0.5266 21 1 6.4918 14.5950 -0.1279 22 1 8.5785 15.1367 -1.2383 23 1 7.6495 12.9045 -1.4252 24 6 4.4268 4.6413 -0.6039 25 7 3.7999 3.5407 -0.9317 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.9500 -0.8400 0.0004 30 1 4.0095 0.6534 0.8892 31 1 4.0089 0.6537 -0.8908 32 1 5.4409 2.5862 1.7410 33 1 6.5058 5.0434 2.0042 34 1 6.6536 7.6894 2.4939 35 1 8.0291 7.2023 1.4746 36 1 7.2924 8.7939 -0.2788 37 1 5.9171 9.2805 0.7409 38 1 7.4914 10.0432 2.4988 39 1 8.8663 9.5563 1.4786 40 1 8.1285 11.1484 -0.2740 41 1 6.7537 11.6347 0.7466 42 1 9.6148 15.3262 1.2913 43 1 4.3687 5.5827 -1.1300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588300824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:28 Heat of formation + Delta-G solvation = -32.863618 kcal Electronic energy + Delta-G solvation = -23721.716719 eV Core-core repulsion = 19995.320333 eV Total energy + Delta-G solvation = -3726.396386 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.38055 -40.79980 -40.25342 -36.72185 -35.82774 -35.65739 -34.60404 -33.98209 -31.95796 -30.62610 -29.19093 -27.56158 -26.46625 -24.12981 -22.98252 -22.05179 -21.77651 -21.55404 -20.81067 -18.87635 -18.72347 -18.28108 -17.76697 -17.13452 -16.90924 -16.61867 -16.35184 -16.16778 -15.89705 -15.40451 -15.13424 -14.96986 -14.64538 -14.44837 -14.23757 -13.86511 -13.81871 -13.68092 -13.45494 -13.21665 -13.13022 -12.84922 -12.30706 -12.04325 -11.88789 -11.74251 -11.69899 -11.46415 -11.30364 -11.23200 -11.22166 -10.75038 -10.74373 -10.33882 -10.19144 -8.69605 -8.28721 -6.31262 0.75755 1.35225 1.35368 1.36683 1.42772 1.49598 1.51070 2.16403 2.23964 2.27288 2.36706 3.06968 3.66290 3.74102 3.83779 3.97946 4.08685 4.19634 4.20865 4.22104 4.43542 4.56756 4.57969 4.66622 4.69856 4.70977 4.82124 4.90981 4.92500 5.16787 5.18788 5.23950 5.34276 5.35587 5.63989 5.69219 5.70754 5.76742 6.03897 6.31184 6.50365 6.53820 6.70817 6.76808 7.21336 7.31654 7.33664 8.87798 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.039537 B = 0.001820 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.031886 B =15385.131868 C =15792.443289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.716 5.716 3 C 0.487 3.513 4 O -0.574 6.574 5 C 0.119 3.881 6 N -0.365 5.365 7 C 0.043 3.957 8 C -0.020 4.020 9 N -0.629 5.629 10 C 0.509 3.491 11 O -0.573 6.573 12 C -0.123 4.123 13 C -0.099 4.099 14 C -0.093 4.093 15 C -0.019 4.019 16 C -0.530 4.530 17 H 0.039 0.961 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.945 3.055 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.253 1.253 24 C 0.020 3.980 25 N -0.302 5.302 26 H 0.040 0.960 27 H 0.116 0.884 28 H 0.045 0.955 29 H 0.425 0.575 30 H 0.182 0.818 31 H 0.141 0.859 32 H 0.235 0.765 33 H 0.431 0.569 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.013 0.987 41 H 0.011 0.989 42 H 0.266 0.734 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.281 -41.423 1.280 43.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.370 5.370 3 C 0.272 3.728 4 O -0.452 6.452 5 C -0.005 4.005 6 N -0.150 5.150 7 C -0.104 4.104 8 C -0.124 4.124 9 N -0.277 5.277 10 C 0.298 3.702 11 O -0.451 6.451 12 C -0.163 4.163 13 C -0.137 4.137 14 C -0.131 4.131 15 C -0.056 4.056 16 C -0.568 4.568 17 H 0.057 0.943 18 C -0.191 4.191 19 N -0.591 5.591 20 Si 0.769 3.231 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.177 1.177 24 C -0.167 4.167 25 N -0.124 5.124 26 H 0.059 0.941 27 H 0.135 0.865 28 H 0.064 0.936 29 H 0.263 0.737 30 H 0.199 0.801 31 H 0.159 0.841 32 H 0.251 0.749 33 H 0.270 0.730 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.032 0.968 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -13.925 -40.938 -0.220 43.242 hybrid contribution 0.509 1.101 0.181 1.226 sum -13.416 -39.837 -0.039 42.035 Atomic orbital electron populations 1.21622 0.79120 1.04296 1.00898 1.45594 1.08136 1.08437 1.74866 1.21320 0.91292 0.84112 0.76073 1.90830 1.70978 1.33506 1.49877 1.21924 0.90218 0.78143 1.10196 1.48064 1.35758 1.10033 1.21183 1.22613 0.97273 0.92389 0.98096 1.17970 1.03910 0.91504 0.99014 1.42718 1.45581 1.08752 1.30622 1.21364 0.81856 0.82698 0.84244 1.90600 1.47562 1.78797 1.28152 1.21642 1.01070 0.92507 1.01079 1.21295 0.99665 0.93729 0.99058 1.21336 0.99182 0.93706 0.98884 1.19592 0.95368 0.94561 0.96075 1.21566 1.27058 0.95835 1.12336 0.94278 1.25957 0.96113 0.96759 1.00303 1.70058 1.41098 1.05383 1.42563 0.85728 0.78855 0.78504 0.80002 1.19374 1.20688 1.17698 1.24347 0.96696 0.97923 0.97703 1.77416 1.22454 0.97448 1.15119 0.94150 0.86548 0.93629 0.73689 0.80063 0.84105 0.74907 0.73004 0.86137 0.85876 0.92969 0.93124 0.92323 0.92177 0.96841 0.97073 0.92553 0.80634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 10.70 127.77 1.37 1.97 16 2 N -0.72 -3.91 5.71 -484.52 -2.77 -6.68 16 3 C 0.49 6.85 7.86 87.66 0.69 7.54 16 4 O -0.57 -16.29 15.72 -3.03 -0.05 -16.34 16 5 C 0.12 0.74 7.00 85.63 0.60 1.34 16 6 N -0.37 -6.46 3.42 -350.71 -1.20 -7.66 16 7 C 0.04 0.59 11.52 83.50 0.96 1.55 16 8 C -0.02 -0.44 6.90 37.62 0.26 -0.18 16 9 N -0.63 -11.52 5.47 -304.04 -1.66 -13.18 16 10 C 0.51 13.08 7.80 87.66 0.68 13.76 16 11 O -0.57 -20.35 13.14 -3.11 -0.04 -20.40 16 12 C -0.12 -2.71 5.70 29.85 0.17 -2.54 16 13 C -0.10 -3.22 4.50 30.60 0.14 -3.08 16 14 C -0.09 -3.58 5.15 30.59 0.16 -3.42 16 15 C -0.02 -0.91 4.04 29.85 0.12 -0.79 16 16 C -0.53 -31.48 9.66 25.60 0.25 -31.24 16 17 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16 18 C 0.01 0.32 5.47 84.65 0.46 0.79 16 19 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 20 Si 0.95 46.74 27.47 68.60 1.88 48.63 16 21 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.25 -11.97 6.54 99.48 0.65 -11.32 16 24 C 0.02 0.62 10.84 85.33 0.92 1.55 16 25 N -0.30 -8.88 11.64 -56.76 -0.66 -9.54 16 26 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.43 -1.69 8.83 -92.71 -0.82 -2.51 16 30 H 0.18 -0.97 8.07 -2.39 -0.02 -0.99 16 31 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.23 0.25 8.06 -2.91 -0.02 0.22 16 33 H 0.43 3.73 8.83 -92.71 -0.82 2.92 16 34 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 37 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 41 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 42 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 43 H 0.18 6.30 5.92 -2.91 -0.02 6.28 16 Total: -1.00 -99.10 366.54 1.93 -97.17 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -0.66 Total: 1.38 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 6.78 Total: -12.75 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -5.99 Total: -97.70 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.09 Total: -36.73 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.88 Total: 48.63 kcal Total: -99.10 1.93 -97.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588300824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.305 kcal (2) G-P(sol) polarization free energy of solvation -99.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds