Wall clock time and date at job start Fri Apr 10 2020 22:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 O 1.42895 * 109.47278 * 65.00304 * 4 2 1 6 6 C 1.42901 * 113.99983 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.46933 * 179.97438 * 6 5 4 8 8 C 1.38242 * 119.99532 * 269.72427 * 7 6 5 9 9 C 1.38240 * 119.99257 * 179.76684 * 8 7 6 10 10 C 1.38233 * 120.00248 * 0.48466 * 9 8 7 11 11 C 1.38233 * 120.00041 * 359.79320 * 10 9 8 12 12 C 1.38232 * 120.00049 * 89.99769 * 7 6 5 13 13 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 14 14 S 1.81399 * 109.47477 * 295.00000 * 13 2 1 15 15 C 1.81402 * 102.99808 * 180.02562 * 14 13 2 16 16 C 1.53008 * 109.46795 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.46716 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.46700 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00175 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99995 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00311 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99860 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47251 * 89.99717 * 22 20 18 24 24 H 1.48502 * 109.47252 * 209.99622 * 22 20 18 25 25 H 1.48506 * 109.47062 * 329.99281 * 22 20 18 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 28 28 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 29 29 H 1.09001 * 109.46992 * 185.00551 * 4 2 1 30 30 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 31 31 H 1.09002 * 109.46994 * 299.99604 * 6 5 4 32 32 H 1.08995 * 109.47265 * 60.00070 * 6 5 4 33 33 H 1.07990 * 120.00422 * 359.97438 * 8 7 6 34 34 H 1.08001 * 119.99459 * 180.24997 * 9 8 7 35 35 H 1.08006 * 119.99958 * 179.76511 * 10 9 8 36 36 H 1.07999 * 119.99790 * 179.97438 * 11 10 9 37 37 H 1.07993 * 120.00155 * 0.02562 * 12 7 6 38 38 H 1.09002 * 109.47016 * 55.00506 * 13 2 1 39 39 H 1.09000 * 109.46709 * 175.00070 * 13 2 1 40 40 H 1.09000 * 109.47082 * 299.99553 * 15 14 13 41 41 H 1.08993 * 109.47415 * 59.99961 * 15 14 13 42 42 H 1.09000 * 109.46687 * 299.99485 * 16 15 14 43 43 H 1.08992 * 109.46993 * 59.99970 * 16 15 14 44 44 H 1.09000 * 109.47022 * 299.99158 * 17 16 15 45 45 H 1.08993 * 109.47554 * 59.99614 * 17 16 15 46 46 H 0.96995 * 120.00091 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.6621 0.0168 -2.4130 6 6 2.0915 -0.5745 -3.6411 7 6 1.6405 0.2823 -4.7958 8 6 0.4130 0.0526 -5.3888 9 6 -0.0028 0.8417 -6.4449 10 6 0.8131 1.8540 -6.9145 11 6 2.0429 2.0800 -6.3253 12 6 2.4565 1.2943 -5.2657 13 6 2.0399 -0.7212 1.2493 14 16 1.5600 0.2157 2.7266 15 6 2.2429 -0.7798 4.0807 16 6 1.9173 -0.1125 5.4186 17 6 2.4938 -0.9518 6.5606 18 6 2.1736 -0.2943 7.8783 19 1 1.6145 0.6295 7.8991 20 6 2.5936 -0.8726 9.0574 21 7 2.3137 -0.2991 10.2074 22 14 3.5600 -2.4708 9.0214 23 1 5.0120 -2.1696 8.9414 24 1 3.2826 -3.2451 10.2579 25 1 3.1538 -3.2684 7.8364 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 3.1789 -0.6500 -3.6472 32 1 1.6576 -1.5698 -3.7364 33 1 -0.2224 -0.7411 -5.0248 34 1 -0.9635 0.6648 -6.9056 35 1 0.4898 2.4680 -7.7421 36 1 2.6805 2.8706 -6.6924 37 1 3.4175 1.4707 -4.8056 38 1 1.6053 -1.7198 1.2952 39 1 3.1263 -0.7994 1.2057 40 1 1.8035 -1.7769 4.0560 41 1 3.3241 -0.8562 3.9660 42 1 2.3564 0.8848 5.4435 43 1 0.8360 -0.0365 5.5330 44 1 2.0550 -1.9493 6.5358 45 1 3.5750 -1.0275 6.4460 46 1 2.6095 -0.7058 11.0368 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902547940.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:43 Heat of formation + Delta-G solvation = -53.002390 kcal Electronic energy + Delta-G solvation = -21148.080231 eV Core-core repulsion = 17934.811025 eV Total energy + Delta-G solvation = -3213.269205 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.155 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.79251 -38.35399 -35.39997 -34.57704 -32.19647 -32.08015 -31.30323 -28.19094 -27.37699 -27.12177 -25.53962 -23.18948 -22.98859 -21.76169 -20.67275 -20.03221 -17.36239 -17.13306 -16.73724 -16.49246 -15.95333 -15.65576 -15.39225 -14.94778 -14.81352 -14.36605 -14.21705 -13.81195 -13.71865 -13.39755 -13.07587 -12.95558 -12.74193 -12.42614 -12.32713 -12.04159 -12.01335 -11.50731 -11.46391 -11.27992 -11.21496 -11.17939 -10.94818 -10.86542 -10.02294 -9.97033 -9.83620 -9.71358 -9.52404 -9.31733 -9.24403 -9.21735 -8.55264 -7.46181 -6.05157 -4.03608 0.85202 1.00528 1.78173 2.81839 3.14701 3.29048 3.36516 3.39225 3.68682 4.38977 4.39378 4.43532 4.55102 4.60120 4.69037 4.71564 4.82824 4.86141 4.94836 5.07437 5.11637 5.13328 5.24353 5.27882 5.35317 5.39672 5.49851 5.52378 5.55799 5.60484 5.63331 5.89639 5.99157 6.03140 6.04100 6.10364 6.18203 6.23387 6.41243 6.50660 6.57308 6.81630 6.82447 7.24705 7.36864 7.76318 8.52622 8.99953 9.56616 11.08286 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.045521 B = 0.001634 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.946826 B =17132.765828 C =17284.638764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 H 0.088 0.912 4 C 0.070 3.930 5 O -0.376 6.376 6 C 0.102 3.898 7 C -0.090 4.090 8 C -0.099 4.099 9 C -0.124 4.124 10 C -0.116 4.116 11 C -0.124 4.124 12 C -0.099 4.099 13 C -0.086 4.086 14 S -0.262 6.262 15 C -0.080 4.080 16 C -0.087 4.087 17 C -0.008 4.008 18 C -0.521 4.521 19 H 0.073 0.927 20 C 0.067 3.933 21 N -0.902 5.902 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.266 1.266 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.017 0.983 45 H 0.012 0.988 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 -1.086 -36.067 36.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.090 4.090 3 H 0.106 0.894 4 C -0.008 4.008 5 O -0.296 6.296 6 C 0.026 3.974 7 C -0.090 4.090 8 C -0.117 4.117 9 C -0.142 4.142 10 C -0.134 4.134 11 C -0.142 4.142 12 C -0.117 4.117 13 C -0.235 4.235 14 S -0.034 6.034 15 C -0.228 4.228 16 C -0.126 4.126 17 C -0.047 4.047 18 C -0.559 4.559 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.541 5.541 22 Si 0.708 3.292 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.035 0.965 45 H 0.030 0.970 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.586 0.005 -35.806 35.841 hybrid contribution 1.435 -2.259 0.078 2.677 sum -0.151 -2.253 -35.728 35.800 Atomic orbital electron populations 1.21832 0.93642 1.02043 1.02736 1.20814 0.97553 1.00410 0.90257 0.89411 1.22557 0.98525 0.94738 0.84976 1.87966 1.78690 1.49985 1.12941 1.21294 0.98456 0.94871 0.82776 1.19610 0.95328 0.97620 0.96407 1.21087 0.95214 0.99538 0.95845 1.21169 0.99879 0.95979 0.97164 1.21221 0.94501 0.97775 0.99861 1.21172 0.96711 0.99683 0.96610 1.21092 0.99799 0.94471 0.96313 1.23306 1.03410 1.01452 0.95303 1.86914 1.76363 1.39351 1.00726 1.23647 1.02444 1.00617 0.96096 1.21272 1.01657 0.99602 0.90081 1.19573 0.95614 0.95626 0.93865 1.21118 1.35906 1.10054 0.88845 0.90889 1.25026 0.95696 0.97290 0.95437 1.69913 1.46832 1.39836 0.97544 0.86775 0.80625 0.84238 0.77606 1.20294 1.21329 1.19095 0.92912 0.91218 0.91958 0.93150 0.93056 0.92443 0.92453 0.85921 0.85875 0.85989 0.85863 0.85899 0.90203 0.90278 0.90624 0.90661 0.91788 0.91746 0.96515 0.96954 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.92 37.16 0.33 -1.19 16 2 C -0.07 -0.72 2.62 -90.62 -0.24 -0.96 16 3 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.07 0.60 5.32 37.16 0.20 0.80 16 5 O -0.38 -3.71 9.86 -35.23 -0.35 -4.06 16 6 C 0.10 0.78 6.06 36.01 0.22 1.00 16 7 C -0.09 -0.74 5.51 -104.62 -0.58 -1.31 16 8 C -0.10 -0.76 9.70 -39.58 -0.38 -1.14 16 9 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 10 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 11 C -0.12 -0.86 10.05 -39.58 -0.40 -1.25 16 12 C -0.10 -0.76 9.70 -39.58 -0.38 -1.15 16 13 C -0.09 -0.94 5.38 37.16 0.20 -0.74 16 14 S -0.26 -3.86 20.55 -107.50 -2.21 -6.07 16 15 C -0.08 -1.30 5.94 37.16 0.22 -1.08 16 16 C -0.09 -1.75 5.16 -26.73 -0.14 -1.89 16 17 C -0.01 -0.18 4.04 -27.88 -0.11 -0.29 16 18 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 19 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 21 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 22 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.82 7.13 -51.93 -0.37 0.45 16 28 H 0.06 0.66 7.82 -51.93 -0.41 0.25 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 33 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 35 H 0.12 0.55 8.06 -52.48 -0.42 0.13 16 36 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 39 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.08 1.17 8.14 -51.92 -0.42 0.74 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 45 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -31.70 390.12 -11.17 -42.88 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -8.31 Total: -3.33 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -2.29 Total: -25.09 kcal Atomic # 7 Polarization: -28.00 SS G_CDS: 0.77 Total: -27.23 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.35 Total: -4.06 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.21 Total: -6.07 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.70 -11.17 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902547940.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.127 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds