Wall clock time and date at job start Fri Apr 10 2020 22:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 O 1.42895 * 109.47278 * 65.00304 * 4 2 1 6 6 C 1.42901 * 113.99983 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.46933 * 179.97438 * 6 5 4 8 8 C 1.38242 * 119.99532 * 269.72427 * 7 6 5 9 9 C 1.38240 * 119.99257 * 179.76684 * 8 7 6 10 10 C 1.38233 * 120.00248 * 0.48466 * 9 8 7 11 11 C 1.38233 * 120.00041 * 359.79320 * 10 9 8 12 12 C 1.38232 * 120.00049 * 89.99769 * 7 6 5 13 13 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 14 14 S 1.81399 * 109.47477 * 295.00000 * 13 2 1 15 15 C 1.81402 * 102.99808 * 180.02562 * 14 13 2 16 16 C 1.53008 * 109.46795 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.46716 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.46700 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00175 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99995 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00311 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99860 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47251 * 89.99717 * 22 20 18 24 24 H 1.48502 * 109.47252 * 209.99622 * 22 20 18 25 25 H 1.48506 * 109.47062 * 329.99281 * 22 20 18 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 28 28 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 29 29 H 1.09001 * 109.46992 * 185.00551 * 4 2 1 30 30 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 31 31 H 1.09002 * 109.46994 * 299.99604 * 6 5 4 32 32 H 1.08995 * 109.47265 * 60.00070 * 6 5 4 33 33 H 1.07990 * 120.00422 * 359.97438 * 8 7 6 34 34 H 1.08001 * 119.99459 * 180.24997 * 9 8 7 35 35 H 1.08006 * 119.99958 * 179.76511 * 10 9 8 36 36 H 1.07999 * 119.99790 * 179.97438 * 11 10 9 37 37 H 1.07993 * 120.00155 * 0.02562 * 12 7 6 38 38 H 1.09002 * 109.47016 * 55.00506 * 13 2 1 39 39 H 1.09000 * 109.46709 * 175.00070 * 13 2 1 40 40 H 1.09000 * 109.47082 * 299.99553 * 15 14 13 41 41 H 1.08993 * 109.47415 * 59.99961 * 15 14 13 42 42 H 1.09000 * 109.46687 * 299.99485 * 16 15 14 43 43 H 1.08992 * 109.46993 * 59.99970 * 16 15 14 44 44 H 1.09000 * 109.47022 * 299.99158 * 17 16 15 45 45 H 1.08993 * 109.47554 * 59.99614 * 17 16 15 46 46 H 0.96995 * 120.00091 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.6621 0.0168 -2.4130 6 6 2.0915 -0.5745 -3.6411 7 6 1.6405 0.2823 -4.7958 8 6 0.4130 0.0526 -5.3888 9 6 -0.0028 0.8417 -6.4449 10 6 0.8131 1.8540 -6.9145 11 6 2.0429 2.0800 -6.3253 12 6 2.4565 1.2943 -5.2657 13 6 2.0399 -0.7212 1.2493 14 16 1.5600 0.2157 2.7266 15 6 2.2429 -0.7798 4.0807 16 6 1.9173 -0.1125 5.4186 17 6 2.4938 -0.9518 6.5606 18 6 2.1736 -0.2943 7.8783 19 1 1.6145 0.6295 7.8991 20 6 2.5936 -0.8726 9.0574 21 7 2.3137 -0.2991 10.2074 22 14 3.5600 -2.4708 9.0214 23 1 5.0120 -2.1696 8.9414 24 1 3.2826 -3.2451 10.2579 25 1 3.1538 -3.2684 7.8364 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 3.1789 -0.6500 -3.6472 32 1 1.6576 -1.5698 -3.7364 33 1 -0.2224 -0.7411 -5.0248 34 1 -0.9635 0.6648 -6.9056 35 1 0.4898 2.4680 -7.7421 36 1 2.6805 2.8706 -6.6924 37 1 3.4175 1.4707 -4.8056 38 1 1.6053 -1.7198 1.2952 39 1 3.1263 -0.7994 1.2057 40 1 1.8035 -1.7769 4.0560 41 1 3.3241 -0.8562 3.9660 42 1 2.3564 0.8848 5.4435 43 1 0.8360 -0.0365 5.5330 44 1 2.0550 -1.9493 6.5358 45 1 3.5750 -1.0275 6.4460 46 1 2.6095 -0.7058 11.0368 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902547940.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:42 Heat of formation + Delta-G solvation = -68.222861 kcal Electronic energy + Delta-G solvation = -21148.740240 eV Core-core repulsion = 17934.811025 eV Total energy + Delta-G solvation = -3213.929214 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.155 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.31592 -38.99575 -36.41022 -36.13471 -34.15611 -32.73524 -31.79843 -29.95157 -28.33153 -27.75719 -26.18379 -25.00442 -23.48962 -22.29616 -22.08718 -21.20376 -18.95533 -17.93034 -17.76799 -17.10057 -16.84383 -16.52003 -16.35742 -16.22683 -15.94608 -15.55108 -15.20040 -14.92224 -14.43021 -14.28988 -14.25846 -13.94907 -13.78076 -13.55110 -13.50866 -13.21673 -12.95838 -12.93437 -12.67462 -12.26139 -12.08230 -11.94380 -11.85769 -11.81799 -11.75949 -11.58034 -11.39659 -11.31137 -10.79306 -10.77006 -10.57985 -9.83289 -9.76809 -8.61602 -8.29661 -6.35072 0.32256 0.48940 0.69607 1.36545 1.39006 1.50858 1.71065 2.36447 2.57937 3.05480 3.10936 3.77338 3.82262 3.90368 3.91498 4.04942 4.06118 4.11993 4.17102 4.28805 4.31777 4.38673 4.43160 4.45926 4.55768 4.57037 4.64340 4.72094 4.75839 4.76711 4.84512 4.85416 4.99823 5.04907 5.07402 5.14597 5.22350 5.38501 5.44267 5.52449 5.54089 5.60530 5.63958 5.65689 6.08632 6.22767 6.26900 6.72794 7.29480 8.87421 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.045521 B = 0.001634 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.946826 B =17132.765828 C =17284.638764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 H 0.072 0.928 4 C 0.074 3.926 5 O -0.398 6.398 6 C 0.101 3.899 7 C -0.107 4.107 8 C -0.113 4.113 9 C -0.133 4.133 10 C -0.123 4.123 11 C -0.133 4.133 12 C -0.115 4.115 13 C -0.070 4.070 14 S -0.299 6.299 15 C -0.070 4.070 16 C -0.080 4.080 17 C -0.004 4.004 18 C -0.538 4.538 19 H 0.027 0.973 20 C 0.002 3.998 21 N -0.953 5.953 22 Si 0.956 3.044 23 H -0.265 1.265 24 H -0.284 1.284 25 H -0.242 1.242 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.026 0.974 45 H 0.025 0.975 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 -3.311 -38.515 38.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.087 4.087 3 H 0.090 0.910 4 C -0.004 4.004 5 O -0.318 6.318 6 C 0.025 3.975 7 C -0.108 4.108 8 C -0.131 4.131 9 C -0.151 4.151 10 C -0.141 4.141 11 C -0.151 4.151 12 C -0.133 4.133 13 C -0.218 4.218 14 S -0.071 6.071 15 C -0.218 4.218 16 C -0.119 4.119 17 C -0.043 4.043 18 C -0.576 4.576 19 H 0.045 0.955 20 C -0.195 4.195 21 N -0.593 5.593 22 Si 0.779 3.221 23 H -0.190 1.190 24 H -0.210 1.210 25 H -0.165 1.165 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.043 0.957 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.443 -2.212 -38.273 38.339 hybrid contribution 0.994 -1.430 0.771 1.904 sum 0.552 -3.642 -37.502 37.682 Atomic orbital electron populations 1.21773 0.94086 1.02338 1.01627 1.20748 0.97128 0.99840 0.90987 0.90960 1.22524 0.99328 0.94783 0.83799 1.87930 1.79162 1.50901 1.13837 1.21403 0.99172 0.95148 0.81735 1.19821 0.95815 0.98181 0.96938 1.21315 0.95370 1.00133 0.96306 1.21471 1.00721 0.95845 0.97014 1.21546 0.94364 0.97881 1.00315 1.21466 0.97222 0.99981 0.96428 1.21314 1.00284 0.94784 0.96878 1.23336 1.04440 1.01239 0.92770 1.87106 1.76688 1.40552 1.02730 1.23383 1.03436 1.00679 0.94289 1.21044 1.00400 0.98781 0.91643 1.19503 0.96483 0.95957 0.92405 1.21497 1.35353 1.08973 0.91810 0.95459 1.26093 0.96925 1.01751 0.94706 1.70083 1.48549 1.42144 0.98544 0.85576 0.79089 0.78921 0.78543 1.19021 1.21002 1.16521 0.91890 0.92947 0.92381 0.91825 0.91584 0.91391 0.91254 0.85114 0.84135 0.83999 0.84214 0.85252 0.88661 0.88719 0.89300 0.89299 0.93167 0.93124 0.95563 0.95703 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.92 71.98 0.64 -2.15 16 2 C -0.07 -1.25 2.62 -10.79 -0.03 -1.28 16 3 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 4 C 0.07 1.08 5.32 71.98 0.38 1.46 16 5 O -0.40 -7.23 9.86 -148.98 -1.47 -8.70 16 6 C 0.10 1.39 6.06 71.24 0.43 1.82 16 7 C -0.11 -1.68 5.51 -19.86 -0.11 -1.79 16 8 C -0.11 -1.63 9.70 22.27 0.22 -1.42 16 9 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 10 C -0.12 -1.47 10.05 22.27 0.22 -1.24 16 11 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 12 C -0.11 -1.69 9.70 22.27 0.22 -1.48 16 13 C -0.07 -1.33 5.38 71.98 0.39 -0.94 16 14 S -0.30 -8.43 20.55 -56.49 -1.16 -9.59 16 15 C -0.07 -2.12 5.94 71.98 0.43 -1.69 16 16 C -0.08 -3.20 5.16 30.60 0.16 -3.04 16 17 C 0.00 -0.20 4.04 29.85 0.12 -0.08 16 18 C -0.54 -31.72 9.66 25.60 0.25 -31.47 16 19 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 20 C 0.00 0.11 5.47 84.65 0.46 0.57 16 21 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 22 Si 0.96 43.96 27.47 68.60 1.88 45.85 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.05 1.21 7.13 -2.39 -0.02 1.19 16 28 H 0.06 1.19 7.82 -2.39 -0.02 1.17 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 32 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 33 H 0.13 1.53 8.06 -2.92 -0.02 1.51 16 34 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.13 1.60 8.06 -2.91 -0.02 1.57 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 45 H 0.02 1.09 7.57 -2.39 -0.02 1.08 16 46 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -70.11 390.12 4.63 -65.48 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.85 Total: 12.96 kcal Atomic # 6 Polarization: -49.87 SS G_CDS: 4.23 Total: -45.65 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.30 Total: -60.35 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -1.47 Total: -8.70 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.85 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.59 kcal Total: -70.11 4.63 -65.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902547940.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.738 kcal (2) G-P(sol) polarization free energy of solvation -70.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds