Wall clock time and date at job start Fri Apr 10 2020 22:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.47511 * 2 1 4 4 C 1.36000 * 117.00228 * 179.97438 * 3 2 1 5 5 C 1.39689 * 125.67503 * 180.02562 * 4 3 2 6 6 C 1.37983 * 107.64142 * 179.97438 * 5 4 3 7 7 C 1.47169 * 126.43595 * 179.97438 * 6 5 4 8 8 O 1.21627 * 120.00073 * 7.90666 * 7 6 5 9 9 N 1.34774 * 119.99953 * 187.90192 * 7 6 5 10 10 C 1.47426 * 125.64887 * 358.03102 * 9 7 6 11 11 C 1.54910 * 104.92992 * 155.83687 * 10 9 7 12 12 H 1.08998 * 111.00489 * 278.99019 * 11 10 9 13 13 N 1.46503 * 111.00294 * 155.13666 * 11 10 9 14 14 C 1.36935 * 119.99645 * 86.45860 * 13 11 10 15 15 H 1.07996 * 120.00320 * 359.97438 * 14 13 11 16 16 C 1.38821 * 120.00055 * 179.97438 * 14 13 11 17 17 N 1.31614 * 120.00260 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99552 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47138 * 90.00360 * 18 16 14 20 20 H 1.48507 * 109.46679 * 209.99939 * 18 16 14 21 21 H 1.48496 * 109.47376 * 329.99915 * 18 16 14 22 22 C 1.55443 * 101.44799 * 37.00681 * 11 10 9 23 23 C 1.47019 * 125.65086 * 178.05586 * 9 7 6 24 24 H 1.08998 * 109.88623 * 300.45665 * 23 9 7 25 25 C 1.53004 * 109.88063 * 61.46538 * 23 9 7 26 26 N 1.36674 * 107.12570 * 0.23260 * 6 5 4 27 27 H 0.96996 * 126.09637 * 179.77911 * 26 6 5 28 28 N 1.31229 * 125.66894 * 359.97268 * 4 3 2 29 29 H 1.08991 * 109.47677 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46719 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.46946 * 59.98993 * 1 2 3 32 32 H 1.09005 * 109.46719 * 240.00203 * 2 1 3 33 33 H 1.08992 * 109.47052 * 120.01110 * 2 1 3 34 34 H 1.07998 * 126.17996 * 359.95281 * 5 4 3 35 35 H 1.09003 * 110.36921 * 274.73502 * 10 9 7 36 36 H 1.09000 * 110.36756 * 36.94459 * 10 9 7 37 37 H 0.97001 * 120.00240 * 266.45009 * 13 11 10 38 38 H 0.96993 * 120.00371 * 180.02562 * 17 16 14 39 39 H 1.09004 * 110.70602 * 206.13988 * 22 11 10 40 40 H 1.09004 * 110.86050 * 82.96263 * 22 11 10 41 41 H 1.09005 * 109.46858 * 58.55111 * 25 23 9 42 42 H 1.09006 * 109.46846 * 178.54829 * 25 23 9 43 43 H 1.09002 * 109.47086 * 298.54875 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.0137 2.7570 0.0011 6 6 5.3704 2.5054 0.0022 7 6 6.4457 3.5102 0.0025 8 8 6.1776 4.6878 0.1468 9 7 7.7275 3.1255 -0.1569 10 6 8.1957 1.7349 -0.3000 11 6 9.5465 1.8438 -1.0505 12 1 9.3894 1.9574 -2.1231 13 7 10.3998 0.6874 -0.7664 14 6 10.2789 -0.4530 -1.5148 15 1 9.5542 -0.5000 -2.3142 16 6 11.0878 -1.5487 -1.2461 17 7 10.9719 -2.6445 -1.9657 18 14 12.3417 -1.4671 0.1361 19 1 11.7162 -1.9325 1.4000 20 1 13.4988 -2.3377 -0.1934 21 1 12.8069 -0.0665 0.3004 22 6 10.1386 3.1418 -0.4333 23 6 8.8904 4.0230 -0.2166 24 1 8.7792 4.7191 -1.0479 25 6 9.0178 4.7974 1.0968 26 7 5.5279 1.1478 -0.0031 27 1 6.3723 0.6705 -0.0068 28 7 4.2529 0.5687 0.0016 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5140 0.8898 34 1 3.5458 3.7304 0.0005 35 1 8.3419 1.2811 0.6803 36 1 7.4830 1.1528 -0.8842 37 1 11.0505 0.7295 -0.0483 38 1 11.5368 -3.4102 -1.7777 39 1 10.8309 3.6178 -1.1278 40 1 10.6312 2.9305 0.5159 41 1 9.1209 4.0952 1.9241 42 1 9.8964 5.4413 1.0551 43 1 8.1271 5.4075 1.2468 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989025609.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:06:44 Heat of formation + Delta-G solvation = 33.847977 kcal Electronic energy + Delta-G solvation = -25559.397851 eV Core-core repulsion = 21835.894297 eV Total energy + Delta-G solvation = -3723.503554 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.54984 -39.95851 -38.34898 -37.62175 -34.54478 -32.73188 -31.86022 -31.70141 -30.21713 -30.05673 -29.11398 -25.96980 -24.63901 -23.72212 -23.09867 -21.49941 -20.85149 -20.58303 -19.87104 -18.02112 -17.69960 -17.04508 -16.63862 -16.40101 -15.75397 -15.34003 -14.92896 -14.46344 -14.29790 -14.06524 -14.00928 -13.58854 -13.54243 -13.17526 -12.84338 -12.81747 -12.77810 -12.62521 -12.45412 -12.03686 -11.86614 -11.58481 -11.33142 -11.06306 -10.99032 -10.88496 -10.86031 -10.55127 -10.25317 -10.07828 -9.79400 -9.23586 -9.20134 -8.81254 -8.62470 -7.57261 -5.97806 -3.38160 1.03935 2.38445 2.49057 2.63394 3.15349 3.22834 3.25012 3.26500 3.33043 4.25614 4.39897 4.60027 4.71748 4.75074 4.78621 4.85165 4.93352 5.13281 5.17069 5.23696 5.30246 5.33867 5.37161 5.49113 5.54458 5.59955 5.63230 5.66621 5.72332 5.78113 5.81174 6.00978 6.05471 6.09143 6.18538 6.34394 6.49425 6.88166 7.20598 7.34572 7.47650 7.74025 7.96381 8.20002 8.95583 9.67476 9.84209 11.19182 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.012107 B = 0.003970 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.114959 B = 7050.958544 C = 9025.596847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.290 6.290 4 C 0.256 3.744 5 C -0.198 4.198 6 C 0.065 3.935 7 C 0.599 3.401 8 O -0.522 6.522 9 N -0.604 5.604 10 C 0.054 3.946 11 C 0.183 3.817 12 H 0.078 0.922 13 N -0.734 5.734 14 C -0.263 4.263 15 H 0.093 0.907 16 C 0.014 3.986 17 N -0.924 5.924 18 Si 0.883 3.117 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.275 1.275 22 C -0.139 4.139 23 C 0.141 3.859 24 H 0.081 0.919 25 C -0.163 4.163 26 N -0.443 5.443 27 H 0.451 0.549 28 N -0.317 5.317 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.165 0.835 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.366 0.634 38 H 0.263 0.737 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.033 10.362 5.292 16.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.195 6.195 4 C 0.053 3.947 5 C -0.230 4.230 6 C -0.067 4.067 7 C 0.385 3.615 8 O -0.397 6.397 9 N -0.338 5.338 10 C -0.073 4.073 11 C 0.070 3.930 12 H 0.096 0.904 13 N -0.375 5.375 14 C -0.393 4.393 15 H 0.111 0.889 16 C -0.183 4.183 17 N -0.569 5.569 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.201 1.201 22 C -0.178 4.178 23 C 0.038 3.962 24 H 0.099 0.901 25 C -0.221 4.221 26 N -0.168 5.168 27 H 0.306 0.694 28 N -0.159 5.159 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.182 0.818 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.200 0.800 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.391 9.769 5.189 16.610 hybrid contribution 1.220 0.008 0.972 1.560 sum -11.171 9.778 6.161 16.073 Atomic orbital electron populations 1.21789 0.92719 1.02925 1.03403 1.22733 0.95358 0.81214 1.02472 1.86286 1.13849 1.29713 1.89642 1.20214 0.84407 0.91925 0.98128 1.20973 0.89519 0.98125 1.14365 1.21196 0.95103 0.84631 1.05747 1.16663 0.80313 0.86866 0.77653 1.90817 1.82281 1.16560 1.50028 1.48524 1.05157 1.09525 1.70572 1.23796 1.00420 0.81133 1.01927 1.21249 0.87715 0.86490 0.97526 0.90421 1.42667 1.42378 1.12366 1.40112 1.19042 1.18655 0.89192 1.12386 0.88932 1.24701 0.99077 0.95829 0.98696 1.69689 1.42000 1.03942 1.41318 0.86584 0.81993 0.77381 0.82730 1.20878 1.21488 1.20124 1.23108 0.96001 0.96317 1.02373 1.21584 0.84179 0.91775 0.98678 0.90143 1.22160 1.02817 1.00503 0.96630 1.47224 1.07316 1.03689 1.58544 0.69409 1.77359 0.88512 1.20507 1.29556 0.90246 0.91570 0.91520 0.91596 0.91705 0.81753 0.90405 0.90880 0.80030 0.92703 0.89551 0.90283 0.92474 0.91519 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.60 6.33 37.16 0.24 0.84 16 3 O -0.29 -3.82 10.22 -19.74 -0.20 -4.02 16 4 C 0.26 3.76 7.85 -17.27 -0.14 3.63 16 5 C -0.20 -2.86 10.64 -39.13 -0.42 -3.27 16 6 C 0.06 0.95 6.91 -82.18 -0.57 0.39 16 7 C 0.60 9.07 7.64 -12.64 -0.10 8.97 16 8 O -0.52 -8.84 15.86 5.25 0.08 -8.75 16 9 N -0.60 -8.40 3.07 -164.37 -0.50 -8.90 16 10 C 0.05 0.78 5.18 -2.53 -0.01 0.77 16 11 C 0.18 2.93 3.70 -65.62 -0.24 2.69 16 12 H 0.08 1.31 8.13 -51.93 -0.42 0.88 16 13 N -0.73 -14.91 5.08 -51.20 -0.26 -15.17 16 14 C -0.26 -6.65 10.47 -15.06 -0.16 -6.81 16 15 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 16 C 0.01 0.39 5.50 -17.43 -0.10 0.29 16 17 N -0.92 -27.17 13.97 55.49 0.78 -26.40 16 18 Si 0.88 20.29 27.73 -169.99 -4.71 15.57 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -5.85 6.52 56.52 0.37 -5.49 16 22 C -0.14 -1.77 6.12 -24.74 -0.15 -1.93 16 23 C 0.14 1.76 3.47 -66.95 -0.23 1.53 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 C -0.16 -1.88 9.11 37.16 0.34 -1.54 16 26 N -0.44 -6.50 6.73 33.41 0.22 -6.28 16 27 H 0.45 6.30 5.27 -182.65 -0.96 5.34 16 28 N -0.32 -4.89 12.05 30.46 0.37 -4.52 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.16 2.13 8.06 -52.49 -0.42 1.70 16 35 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 36 H 0.07 1.08 5.52 -51.93 -0.29 0.79 16 37 H 0.37 7.32 5.59 -40.82 -0.23 7.09 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.08 0.99 7.72 -51.93 -0.40 0.58 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.91 6.81 -51.93 -0.35 0.56 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -30.33 353.50 -6.95 -37.28 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.89 Total: 11.07 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.15 Total: 4.80 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.60 Total: -61.28 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.12 Total: -12.77 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.71 Total: 15.57 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.33 -6.95 -37.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989025609.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.130 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds