Wall clock time and date at job start Fri Apr 10 2020 22:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35769 * 117.00440 * 2 1 4 4 C 1.35593 * 126.08754 * 183.09982 * 3 2 1 5 5 C 1.41059 * 107.79503 * 179.84520 * 4 3 2 6 6 C 1.47722 * 125.97830 * 180.14342 * 5 4 3 7 7 O 1.21577 * 120.00051 * 353.23181 * 6 5 4 8 8 N 1.34781 * 119.99851 * 173.23851 * 6 5 4 9 9 C 1.46496 * 120.00070 * 3.25058 * 8 6 5 10 10 C 1.46503 * 119.99783 * 183.25304 * 8 6 5 11 11 C 1.53776 * 113.61507 * 219.13209 * 10 8 6 12 12 C 1.53954 * 87.02097 * 220.04748 * 11 10 8 13 13 N 1.46503 * 113.74112 * 139.94458 * 12 11 10 14 14 C 1.36932 * 120.00161 * 107.40014 * 13 12 11 15 15 H 1.08000 * 119.99734 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99998 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99951 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00189 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47035 * 89.99619 * 18 16 14 20 20 H 1.48500 * 109.47462 * 209.99678 * 18 16 14 21 21 H 1.48498 * 109.47130 * 330.00065 * 18 16 14 22 22 C 1.53778 * 87.10943 * 25.36362 * 12 11 10 23 23 N 1.31857 * 108.04286 * 0.41675 * 5 4 3 24 24 N 1.35849 * 126.07876 * 3.40202 * 3 2 1 25 25 C 1.46494 * 125.95287 * 0.02562 * 24 3 2 26 26 H 1.09004 * 109.47322 * 188.91830 * 1 2 3 27 27 H 1.09004 * 109.47342 * 308.91857 * 1 2 3 28 28 H 1.08996 * 109.47150 * 68.92114 * 1 2 3 29 29 H 1.07992 * 126.10056 * 359.97004 * 4 3 2 30 30 H 1.08992 * 109.47193 * 84.21873 * 9 8 6 31 31 H 1.08998 * 109.46639 * 204.22202 * 9 8 6 32 32 H 1.09004 * 109.47138 * 324.22135 * 9 8 6 33 33 H 1.09007 * 112.85052 * 350.33093 * 10 8 6 34 34 H 1.08997 * 113.61392 * 334.57590 * 11 10 8 35 35 H 1.09011 * 113.61216 * 105.46933 * 11 10 8 36 36 H 1.08995 * 113.53584 * 270.81220 * 12 11 10 37 37 H 0.97000 * 119.99414 * 287.40413 * 13 12 11 38 38 H 0.97001 * 120.00449 * 180.02562 * 17 16 14 39 39 H 1.08998 * 113.61419 * 220.08650 * 22 12 11 40 40 H 1.09002 * 113.61721 * 89.18803 * 22 12 11 41 41 H 1.09001 * 109.47360 * 82.74022 * 25 24 3 42 42 H 1.08994 * 109.47669 * 202.74757 * 25 24 3 43 43 H 1.09005 * 109.47084 * 322.74374 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3829 1.4244 -0.0593 5 6 3.5970 2.8186 -0.0389 6 6 4.9087 3.4960 -0.0898 7 8 5.9327 2.8431 -0.0316 8 7 4.9703 4.8378 -0.2006 9 6 3.7382 5.6303 -0.1989 10 6 6.2695 5.5038 -0.3229 11 6 6.3609 6.8243 0.4598 12 6 7.1375 7.3903 -0.7430 13 7 6.7816 8.7714 -1.0779 14 6 7.6552 9.7894 -0.8032 15 1 8.6067 9.5742 -0.3400 16 6 7.3181 11.0980 -1.1210 17 7 8.1580 12.0764 -0.8574 18 14 5.6726 11.4702 -1.9229 19 1 4.6561 11.7264 -0.8710 20 1 5.8035 12.6704 -2.7875 21 1 5.2500 10.3098 -2.7474 22 6 6.4142 6.3416 -1.6043 23 7 2.4217 3.4111 0.0394 24 7 1.4322 2.4201 0.0652 25 6 -0.0124 2.6490 0.1484 26 1 -0.3634 -1.0153 0.1593 27 1 -0.3634 0.6456 0.7996 28 1 -0.3633 0.3696 -0.9589 29 1 4.1477 0.6639 -0.1144 30 1 3.4308 5.8217 0.8291 31 1 3.9151 6.5778 -0.7078 32 1 2.9521 5.0808 -0.7169 33 1 7.1085 4.8312 -0.1439 34 1 5.3955 7.3039 0.6211 35 1 6.9561 6.7521 1.3702 36 1 8.2143 7.2345 -0.6781 37 1 5.9271 8.9646 -1.4943 38 1 7.9224 12.9909 -1.0791 39 1 7.0522 5.8802 -2.3579 40 1 5.4633 6.6890 -2.0085 41 1 -0.3369 2.5504 1.1843 42 1 -0.2426 3.6521 -0.2105 43 1 -0.5327 1.9148 -0.4668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999087812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:06:56 Heat of formation + Delta-G solvation = 83.956296 kcal Electronic energy + Delta-G solvation = -25274.405057 eV Core-core repulsion = 21553.074363 eV Total energy + Delta-G solvation = -3721.330694 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.97406 -40.06111 -38.72109 -37.84977 -34.89259 -33.86100 -33.03748 -30.73845 -30.23899 -28.38633 -26.98518 -26.86826 -25.22358 -24.89136 -23.27216 -21.88511 -21.34995 -19.53268 -18.99198 -18.09880 -17.40044 -17.15439 -16.92025 -16.18994 -15.84124 -15.54435 -15.35842 -14.79946 -14.65095 -14.51330 -14.21827 -13.91746 -13.60418 -13.38142 -13.05859 -12.95916 -12.70147 -12.41340 -12.16249 -11.89822 -11.87692 -11.75036 -11.71169 -11.00018 -10.82513 -10.67461 -10.43832 -10.17385 -10.13543 -9.88773 -9.57148 -9.50368 -8.91098 -8.75341 -8.44329 -7.27947 -5.78275 -3.14087 1.10805 1.76203 1.91827 2.42990 3.06415 3.29221 3.35929 3.38146 3.44008 3.80906 4.21356 4.27743 4.48237 4.51709 4.57312 4.67321 4.89153 4.96521 4.98984 5.06423 5.13772 5.26318 5.32313 5.41838 5.51013 5.61308 5.66338 5.68538 5.78050 5.88562 6.09863 6.14346 6.19445 6.24932 6.40253 6.52454 6.71737 6.89702 6.92178 7.07793 7.45817 7.98230 8.13574 8.41309 9.18642 9.91073 10.10789 11.39908 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.026909 B = 0.002765 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.289301 B =10123.681845 C =10937.836042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.288 6.288 3 C 0.269 3.731 4 C -0.235 4.235 5 C 0.064 3.936 6 C 0.594 3.406 7 O -0.529 6.529 8 N -0.583 5.583 9 C 0.072 3.928 10 C 0.116 3.884 11 C -0.174 4.174 12 C 0.176 3.824 13 N -0.734 5.734 14 C -0.247 4.247 15 H 0.092 0.908 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.884 3.116 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.165 4.165 23 N -0.245 5.245 24 N -0.398 5.398 25 C 0.077 3.923 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.166 0.834 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.362 0.638 38 H 0.260 0.740 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.600 -24.034 1.592 31.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.195 6.195 3 C 0.102 3.898 4 C -0.264 4.264 5 C -0.102 4.102 6 C 0.379 3.621 7 O -0.404 6.404 8 N -0.313 5.313 9 C -0.071 4.071 10 C 0.013 3.987 11 C -0.215 4.215 12 C 0.064 3.936 13 N -0.373 5.373 14 C -0.377 4.377 15 H 0.110 0.890 16 C -0.192 4.192 17 N -0.580 5.580 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.206 4.206 23 N -0.076 5.076 24 N -0.195 5.195 25 C -0.064 4.064 26 H 0.127 0.873 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.183 0.817 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.137 0.863 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.195 0.805 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.487 -23.393 1.748 31.145 hybrid contribution -1.418 -0.213 -0.538 1.532 sum -21.906 -23.606 1.210 32.227 Atomic orbital electron populations 1.23670 0.77995 1.05362 1.01570 1.86307 1.21605 1.21676 1.89873 1.19591 0.91086 0.78943 1.00165 1.20337 0.92015 0.95595 1.18492 1.21909 0.92848 0.93021 1.02466 1.17011 0.85965 0.81907 0.77265 1.90793 1.34101 1.64900 1.50566 1.47738 1.08327 1.05155 1.70111 1.22109 0.85786 0.96722 1.02532 1.22696 0.84764 0.93017 0.98194 1.24323 1.02428 0.94425 1.00359 1.21355 0.97187 0.83459 0.91625 1.42703 1.19558 1.02042 1.73042 1.19149 0.99119 0.85623 1.33792 0.88996 1.24697 0.97774 0.95610 1.01072 1.69701 1.35803 0.99359 1.53118 0.86553 0.85043 0.77516 0.79447 1.21078 1.21728 1.20309 1.23962 1.01581 0.97960 0.97062 1.77972 0.95194 1.10003 1.24437 1.49286 1.07168 1.03175 1.59843 1.22510 0.74848 1.05603 1.03390 0.87307 0.91593 0.91899 0.81694 0.92354 0.90569 0.89098 0.86256 0.89933 0.91507 0.89323 0.80513 0.93033 0.91208 0.90223 0.90301 0.88265 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.41 101.05 0.95 0.98 16 2 O -0.29 -2.41 10.57 -19.02 -0.20 -2.61 16 3 C 0.27 2.79 7.78 -16.72 -0.13 2.66 16 4 C -0.23 -2.93 10.60 -39.46 -0.42 -3.35 16 5 C 0.06 0.88 6.79 -82.91 -0.56 0.32 16 6 C 0.59 9.26 7.68 -12.38 -0.10 9.16 16 7 O -0.53 -9.55 16.38 5.30 0.09 -9.47 16 8 N -0.58 -8.52 3.08 -174.16 -0.54 -9.06 16 9 C 0.07 0.90 8.31 59.84 0.50 1.40 16 10 C 0.12 1.79 4.22 -67.12 -0.28 1.51 16 11 C -0.17 -2.89 7.31 -25.83 -0.19 -3.08 16 12 C 0.18 3.32 4.48 -67.03 -0.30 3.02 16 13 N -0.73 -17.04 5.21 -52.55 -0.27 -17.31 16 14 C -0.25 -6.89 10.45 -15.06 -0.16 -7.04 16 15 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 16 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 17 N -0.93 -29.16 13.97 55.49 0.78 -28.38 16 18 Si 0.88 21.83 27.74 -169.99 -4.71 17.11 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.28 -6.40 6.52 56.52 0.37 -6.04 16 22 C -0.17 -2.65 7.34 -25.92 -0.19 -2.84 16 23 N -0.24 -2.96 9.08 33.34 0.30 -2.65 16 24 N -0.40 -3.75 4.04 -68.19 -0.28 -4.03 16 25 C 0.08 0.34 9.57 59.84 0.57 0.91 16 26 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.07 0.14 5.63 -51.93 -0.29 -0.15 16 28 H 0.06 0.14 6.74 -51.93 -0.35 -0.21 16 29 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.96 6.11 -51.93 -0.32 0.65 16 32 H 0.09 1.09 5.36 -51.93 -0.28 0.81 16 33 H 0.12 1.89 7.20 -51.93 -0.37 1.52 16 34 H 0.08 1.38 6.68 -51.93 -0.35 1.04 16 35 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 36 H 0.09 1.70 8.10 -51.93 -0.42 1.27 16 37 H 0.36 8.21 5.79 -40.82 -0.24 7.98 16 38 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.26 6.88 -51.93 -0.36 0.90 16 41 H 0.08 0.23 7.62 -51.93 -0.40 -0.16 16 42 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.18 4.69 -51.93 -0.24 -0.06 16 LS Contribution 346.15 15.07 5.22 5.22 Total: -1.00 -35.10 346.15 -5.76 -40.87 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.74 Total: 6.65 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.40 Total: 3.67 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.01 Total: -61.44 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.11 Total: -12.08 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.10 -5.76 -40.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999087812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.822 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds