Wall clock time and date at job start Fri Apr 10 2020 22:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35346 * 116.99606 * 2 1 4 4 C 1.38998 * 126.40436 * 91.87465 * 3 2 1 5 5 C 1.46919 * 126.49641 * 359.97438 * 4 3 2 6 6 O 1.21673 * 119.99986 * 29.39404 * 5 4 3 7 7 N 1.34775 * 120.00152 * 209.38556 * 5 4 3 8 8 C 1.46922 * 120.63190 * 357.00965 * 7 5 4 9 9 C 1.53187 * 108.78067 * 126.41063 * 8 7 5 10 10 C 1.53043 * 109.31375 * 54.63174 * 9 8 7 11 11 C 1.53045 * 109.53796 * 298.63983 * 10 9 8 12 12 H 1.09002 * 109.49283 * 301.37994 * 11 10 9 13 13 N 1.46493 * 109.49953 * 181.31846 * 11 10 9 14 14 C 1.36932 * 120.00599 * 154.99888 * 13 11 10 15 15 H 1.07997 * 119.99477 * 359.97438 * 14 13 11 16 16 C 1.38816 * 120.00252 * 180.02562 * 14 13 11 17 17 N 1.31618 * 119.99631 * 179.72219 * 16 14 13 18 18 Si 1.86793 * 119.99900 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47288 * 90.00434 * 18 16 14 20 20 H 1.48503 * 109.47119 * 210.00376 * 18 16 14 21 21 H 1.48494 * 109.47331 * 330.00349 * 18 16 14 22 22 C 1.46933 * 120.62932 * 177.02548 * 7 5 4 23 23 C 1.41459 * 107.00542 * 180.25817 * 4 3 2 24 24 N 1.30312 * 108.14176 * 359.55191 * 23 4 3 25 25 N 1.34663 * 126.41001 * 271.86716 * 3 2 1 26 26 C 1.46498 * 125.73620 * 359.96792 * 25 3 2 27 27 H 1.09001 * 109.47088 * 55.04339 * 1 2 3 28 28 H 1.09007 * 109.47076 * 175.04082 * 1 2 3 29 29 H 1.09000 * 109.47480 * 295.04062 * 1 2 3 30 30 H 1.09000 * 109.58806 * 6.61802 * 8 7 5 31 31 H 1.09006 * 109.69796 * 246.26767 * 8 7 5 32 32 H 1.09006 * 109.49801 * 294.68610 * 9 8 7 33 33 H 1.08998 * 109.52996 * 174.60219 * 9 8 7 34 34 H 1.08993 * 109.46018 * 178.61882 * 10 9 8 35 35 H 1.08993 * 109.44766 * 58.65072 * 10 9 8 36 36 H 0.97004 * 119.99673 * 334.99773 * 13 11 10 37 37 H 0.97006 * 120.00040 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.58688 * 113.80114 * 22 7 5 39 39 H 1.08999 * 109.58412 * 353.37585 * 22 7 5 40 40 H 1.08004 * 125.93058 * 179.73234 * 23 4 3 41 41 H 1.08997 * 109.47442 * 94.90057 * 26 25 3 42 42 H 1.09002 * 109.46721 * 214.89458 * 26 25 3 43 43 H 1.08994 * 109.47487 * 334.89222 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.4505 1.9244 1.1181 5 6 2.2948 1.5189 2.5216 6 8 2.2845 0.3384 2.8162 7 7 2.1637 2.4545 3.4829 8 6 2.2399 3.8838 3.1516 9 6 0.9882 4.5826 3.6917 10 6 0.8511 4.2905 5.1877 11 6 0.6938 2.7834 5.4027 12 1 -0.1834 2.4285 4.8616 13 7 0.5311 2.5077 6.8322 14 6 -0.1167 1.3728 7.2414 15 1 -0.5081 0.6811 6.5101 16 6 -0.2712 1.1119 8.5960 17 7 -0.8987 0.0237 8.9891 18 14 0.4052 2.3086 9.8607 19 1 -0.6320 3.3188 10.1907 20 1 0.7834 1.5675 11.0908 21 1 1.6019 2.9908 9.3063 22 6 1.9422 2.0643 4.8820 23 6 3.0370 3.1230 0.6487 24 7 2.9917 3.1141 -0.6536 25 7 2.3748 1.9342 -1.0832 26 6 2.1310 1.5543 -2.4769 27 1 -0.3633 0.5888 -0.8423 28 1 -0.3633 -1.0239 -0.0888 29 1 -0.3634 0.4350 0.9310 30 1 2.2885 4.0061 2.0696 31 1 3.1280 4.3201 3.6089 32 1 0.1085 4.2105 3.1664 33 1 1.0761 5.6580 3.5376 34 1 -0.0252 4.8066 5.5797 35 1 1.7421 4.6405 5.7089 36 1 0.8824 3.1291 7.4890 37 1 -1.0064 -0.1589 9.9357 38 1 2.8058 2.3505 5.4823 39 1 1.7943 0.9860 4.9416 40 1 3.4531 3.9079 1.2630 41 1 1.1956 1.9991 -2.8165 42 1 2.9507 1.9125 -3.0997 43 1 2.0654 0.4689 -2.5515 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000810548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:07:03 Heat of formation + Delta-G solvation = 20.929673 kcal Electronic energy + Delta-G solvation = -26235.021139 eV Core-core repulsion = 22510.957405 eV Total energy + Delta-G solvation = -3724.063734 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.77706 -40.79499 -39.30463 -38.57575 -36.34376 -34.61278 -33.79950 -32.87629 -31.28443 -30.46604 -28.51909 -27.78648 -26.52344 -25.62819 -23.48535 -23.11694 -22.30569 -21.65676 -20.54188 -19.56175 -18.72066 -18.17200 -17.59410 -17.15665 -16.74146 -16.44651 -16.23862 -15.77535 -15.68930 -15.49694 -15.39725 -14.94270 -14.76622 -14.61827 -14.21246 -13.91792 -13.80266 -13.64700 -13.55485 -13.12054 -12.97771 -12.92847 -12.53622 -12.44693 -12.14171 -11.88891 -11.84281 -11.62899 -11.38435 -11.32973 -11.11680 -10.88515 -10.45370 -9.92140 -9.66324 -9.21049 -8.03519 -5.39498 0.12303 1.02849 1.04926 1.38006 1.43604 1.50664 1.96238 2.19151 2.48517 2.52888 3.27280 3.32851 3.55510 3.75863 3.94870 3.99750 4.07648 4.11492 4.13806 4.21958 4.26949 4.33719 4.36501 4.39787 4.47092 4.57960 4.62990 4.67573 4.77542 4.89772 4.94941 4.99894 5.06680 5.16686 5.30588 5.39508 5.47892 5.56295 5.76265 6.19875 6.20303 6.35727 6.51592 7.05706 7.24433 7.78663 8.01235 9.18412 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022712 B = 0.003621 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.528958 B = 7730.100878 C = 8488.055400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.319 6.319 3 C 0.307 3.693 4 C -0.315 4.315 5 C 0.583 3.417 6 O -0.594 6.594 7 N -0.598 5.598 8 C 0.076 3.924 9 C -0.121 4.121 10 C -0.121 4.121 11 C 0.170 3.830 12 H 0.028 0.972 13 N -0.743 5.743 14 C -0.237 4.237 15 H 0.043 0.957 16 C -0.066 4.066 17 N -0.986 5.986 18 Si 0.964 3.036 19 H -0.273 1.273 20 H -0.298 1.298 21 H -0.245 1.245 22 C 0.108 3.892 23 C 0.091 3.909 24 N -0.282 5.282 25 N -0.363 5.363 26 C 0.082 3.918 27 H 0.079 0.921 28 H 0.125 0.875 29 H 0.035 0.965 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.371 0.629 37 H 0.259 0.741 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.240 0.760 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.161 13.613 -25.145 29.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.228 6.228 3 C 0.132 3.868 4 C -0.331 4.331 5 C 0.373 3.627 6 O -0.476 6.476 7 N -0.330 5.330 8 C -0.044 4.044 9 C -0.159 4.159 10 C -0.159 4.159 11 C 0.061 3.939 12 H 0.046 0.954 13 N -0.386 5.386 14 C -0.368 4.368 15 H 0.061 0.939 16 C -0.257 4.257 17 N -0.636 5.636 18 Si 0.790 3.210 19 H -0.199 1.199 20 H -0.224 1.224 21 H -0.170 1.170 22 C -0.018 4.018 23 C -0.094 4.094 24 N -0.105 5.105 25 N -0.152 5.152 26 C -0.057 4.057 27 H 0.098 0.902 28 H 0.143 0.857 29 H 0.054 0.946 30 H 0.139 0.861 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.205 0.795 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.256 0.744 41 H 0.119 0.881 42 H 0.129 0.871 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.321 13.150 -26.206 30.221 hybrid contribution -0.435 -0.933 2.048 2.292 sum 6.886 12.217 -24.159 27.934 Atomic orbital electron populations 1.23358 0.75108 1.06011 1.01533 1.85998 1.22909 1.20838 1.93057 1.19429 0.95549 0.84695 0.87120 1.19943 1.20754 1.00463 0.91924 1.17571 0.75668 0.84682 0.84812 1.90797 1.53590 1.19597 1.83600 1.48006 1.70567 1.07737 1.06680 1.22831 0.99901 0.77929 1.03774 1.21873 0.97659 1.02554 0.93862 1.21806 1.03058 0.92992 0.98074 1.20632 0.94138 0.95713 0.83394 0.95397 1.42649 1.68527 1.24696 1.02774 1.18959 1.27554 0.98571 0.91738 0.93863 1.25626 1.01301 0.99613 0.99129 1.69921 1.49218 1.29050 1.15404 0.85283 0.79307 0.78365 0.78027 1.19908 1.22448 1.16952 1.22183 0.99342 0.99683 0.80581 1.24655 0.97034 0.96038 0.91667 1.77198 1.19099 1.00921 1.13312 1.49223 1.44635 1.13856 1.07491 1.22396 1.05168 1.03030 0.75083 0.90239 0.85702 0.94594 0.86060 0.88205 0.92666 0.86474 0.91258 0.90187 0.79489 0.93261 0.91199 0.94012 0.74407 0.88087 0.87076 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.13 113.37 1.26 1.94 16 2 O -0.32 -8.69 10.11 -86.35 -0.87 -9.56 16 3 C 0.31 8.00 6.97 84.44 0.59 8.59 16 4 C -0.31 -8.75 5.74 -20.03 -0.11 -8.86 16 5 C 0.58 20.91 7.62 86.52 0.66 21.57 16 6 O -0.59 -27.89 16.21 -4.26 -0.07 -27.96 16 7 N -0.60 -18.58 2.97 -823.33 -2.45 -21.03 16 8 C 0.08 1.42 5.54 86.36 0.48 1.90 16 9 C -0.12 -2.26 6.08 30.67 0.19 -2.07 16 10 C -0.12 -3.19 5.35 30.62 0.16 -3.03 16 11 C 0.17 6.64 2.92 45.07 0.13 6.77 16 12 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 13 N -0.74 -35.20 4.93 -322.58 -1.59 -36.79 16 14 C -0.24 -14.13 10.41 84.04 0.88 -13.25 16 15 H 0.04 2.92 8.06 -2.91 -0.02 2.90 16 16 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 17 N -0.99 -65.37 13.97 21.65 0.30 -65.06 16 18 Si 0.96 45.79 27.74 68.60 1.90 47.69 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 21 H -0.25 -10.28 6.52 99.48 0.65 -9.63 16 22 C 0.11 4.19 6.01 86.36 0.52 4.71 16 23 C 0.09 1.77 9.71 85.71 0.83 2.60 16 24 N -0.28 -5.59 12.48 -56.23 -0.70 -6.30 16 25 N -0.36 -7.08 3.99 -479.82 -1.91 -9.00 16 26 C 0.08 0.78 11.41 127.77 1.46 2.24 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 28 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.12 1.74 3.21 -2.39 -0.01 1.73 16 31 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.37 16.23 5.66 -92.70 -0.52 15.71 16 37 H 0.26 16.22 8.31 -92.70 -0.77 15.45 16 38 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.04 2.06 7.02 -2.39 -0.02 2.04 16 40 H 0.24 2.64 5.91 -2.91 -0.02 2.62 16 41 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.10 0.82 8.02 -2.39 -0.02 0.80 16 Total: -1.00 -88.53 351.35 2.57 -85.97 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.45 Total: 22.43 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 7.51 Total: 19.61 kcal Atomic # 7 Polarization: -131.82 SS G_CDS: -6.35 Total: -138.17 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.94 Total: -37.52 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.69 kcal Total: -88.53 2.57 -85.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000810548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.895 kcal (2) G-P(sol) polarization free energy of solvation -88.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds