Wall clock time and date at job start Fri Apr 10 2020 22:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.47262 * 2 1 4 4 C 1.36002 * 117.00206 * 180.02562 * 3 2 1 5 5 C 1.39681 * 125.67109 * 179.97438 * 4 3 2 6 6 C 1.37992 * 107.63624 * 179.73016 * 5 4 3 7 7 C 1.47166 * 126.43186 * 180.22290 * 6 5 4 8 8 O 1.21622 * 120.00709 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99522 * 180.02562 * 7 6 5 10 10 C 1.47435 * 125.64618 * 180.02562 * 9 7 6 11 11 C 1.54916 * 104.82870 * 204.08499 * 10 9 7 12 12 H 1.09008 * 111.00120 * 81.06040 * 11 10 9 13 13 C 1.52993 * 111.00262 * 204.87207 * 11 10 9 14 14 C 1.55154 * 101.58224 * 322.98982 * 11 10 9 15 15 H 1.09000 * 110.72229 * 154.04574 * 14 11 10 16 16 N 1.46504 * 110.71862 * 277.13759 * 14 11 10 17 17 C 1.36936 * 120.00130 * 204.99903 * 16 14 11 18 18 H 1.08002 * 119.99489 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00024 * 179.97438 * 17 16 14 20 20 N 1.31615 * 119.99656 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99868 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46982 * 60.00072 * 21 19 17 23 23 H 1.48497 * 109.46976 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47219 * 300.00302 * 21 19 17 25 25 C 1.47022 * 125.64935 * 359.68262 * 9 7 6 26 26 N 1.36668 * 107.12862 * 0.24069 * 6 5 4 27 27 H 0.97000 * 126.09783 * 180.02562 * 26 6 5 28 28 N 1.31228 * 125.66944 * 0.15975 * 4 3 2 29 29 H 1.09002 * 109.46822 * 300.00154 * 1 2 3 30 30 H 1.09006 * 109.46961 * 60.00011 * 1 2 3 31 31 H 1.08996 * 109.46740 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47457 * 239.99787 * 2 1 3 33 33 H 1.09001 * 109.47302 * 119.99344 * 2 1 3 34 34 H 1.08002 * 126.18460 * 359.97438 * 5 4 3 35 35 H 1.08999 * 110.36265 * 322.92121 * 10 9 7 36 36 H 1.08997 * 110.36976 * 85.13966 * 10 9 7 37 37 H 1.09000 * 109.46831 * 58.55258 * 13 11 10 38 38 H 1.09004 * 109.47388 * 178.54327 * 13 11 10 39 39 H 1.08998 * 109.47400 * 298.54776 * 13 11 10 40 40 H 0.97000 * 120.00054 * 25.00249 * 16 14 11 41 41 H 0.97008 * 119.99612 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.88387 * 298.39753 * 25 9 7 43 43 H 1.08993 * 109.88010 * 59.56784 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3547 1.5255 -0.0005 5 6 4.0135 2.7572 -0.0011 6 6 5.3703 2.5056 0.0046 7 6 6.4455 3.5105 0.0108 8 8 6.1707 4.6953 0.0106 9 7 7.7347 3.1177 0.0155 10 6 8.9058 4.0135 0.0225 11 6 10.0540 3.1697 -0.5855 12 1 9.9993 3.1625 -1.6742 13 6 11.4174 3.6764 -0.1111 14 6 9.7490 1.7639 -0.0040 15 1 10.1487 0.9836 -0.6517 16 7 10.2882 1.6358 1.3521 17 6 10.5966 0.3989 1.8523 18 1 10.4426 -0.4821 1.2469 19 6 11.1080 0.2776 3.1371 20 7 11.2960 1.3513 3.8746 21 14 11.5293 -1.4097 3.8192 22 1 12.5600 -2.0472 2.9610 23 1 12.0537 -1.2680 5.2012 24 1 10.3086 -2.2551 3.8376 25 6 8.2063 1.7252 0.0219 26 7 5.5279 1.1481 0.0032 27 1 6.3724 0.6708 0.0066 28 7 4.2530 0.5689 -0.0040 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.5456 3.7306 -0.0016 35 1 8.7144 4.8927 -0.5927 36 1 9.1501 4.3106 1.0423 37 1 11.4623 3.6335 0.9772 38 1 12.2043 3.0505 -0.5321 39 1 11.5570 4.7061 -0.4402 40 1 10.4268 2.4271 1.8957 41 1 11.6538 1.2666 4.7723 42 1 7.8611 1.2210 0.9245 43 1 7.8357 1.2044 -0.8610 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054774386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:06:18 Heat of formation + Delta-G solvation = 28.019431 kcal Electronic energy + Delta-G solvation = -25579.656465 eV Core-core repulsion = 21855.900167 eV Total energy + Delta-G solvation = -3723.756299 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49154 -39.77949 -38.35133 -37.67563 -34.19532 -32.81194 -32.07215 -30.81318 -30.36038 -30.10967 -28.01993 -26.49143 -24.43432 -23.83067 -22.94726 -21.53449 -21.31403 -20.01362 -19.45432 -18.02528 -17.42312 -16.99175 -16.48940 -16.05425 -15.86113 -15.32690 -14.83185 -14.57446 -14.26526 -14.10796 -13.81729 -13.68234 -13.25931 -13.11021 -12.90329 -12.83185 -12.66140 -12.30901 -12.07139 -11.88302 -11.77169 -11.25671 -11.05158 -11.03981 -10.91609 -10.87354 -10.59590 -10.39370 -10.14836 -10.02264 -9.77743 -9.19457 -9.14741 -8.76403 -8.49899 -7.22392 -5.95744 -3.27426 1.08214 2.38837 2.51000 2.75900 3.25347 3.32059 3.32837 3.37963 3.39391 4.38731 4.42007 4.61076 4.76053 4.82226 4.86569 4.92509 5.10658 5.18054 5.26401 5.30305 5.35578 5.48219 5.55633 5.57685 5.66063 5.68305 5.76643 5.82394 5.98463 6.01968 6.04516 6.16287 6.19519 6.30800 6.38424 6.54635 6.83995 6.89436 7.21259 7.43685 7.51280 7.53881 8.07010 8.21327 9.33662 9.85698 10.20320 11.25685 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.003771 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.095382 B = 7422.745721 C = 9089.853602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.289 6.289 4 C 0.258 3.742 5 C -0.200 4.200 6 C 0.071 3.929 7 C 0.595 3.405 8 O -0.526 6.526 9 N -0.600 5.600 10 C 0.115 3.885 11 C -0.114 4.114 12 H 0.081 0.919 13 C -0.132 4.132 14 C 0.176 3.824 15 H 0.079 0.921 16 N -0.709 5.709 17 C -0.256 4.256 18 H 0.073 0.927 19 C -0.004 4.004 20 N -0.926 5.926 21 Si 0.908 3.092 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.050 3.950 26 N -0.444 5.444 27 H 0.448 0.552 28 N -0.322 5.322 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.165 0.835 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.388 0.612 41 H 0.259 0.741 42 H 0.082 0.918 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.255 0.250 -10.374 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.194 6.194 4 C 0.055 3.945 5 C -0.232 4.232 6 C -0.060 4.060 7 C 0.381 3.619 8 O -0.401 6.401 9 N -0.333 5.333 10 C -0.006 4.006 11 C -0.135 4.135 12 H 0.099 0.901 13 C -0.190 4.190 14 C 0.063 3.937 15 H 0.096 0.904 16 N -0.349 5.349 17 C -0.387 4.387 18 H 0.091 0.909 19 C -0.201 4.201 20 N -0.572 5.572 21 Si 0.739 3.261 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.077 4.077 26 N -0.167 5.167 27 H 0.301 0.699 28 N -0.164 5.164 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.183 0.817 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.224 0.776 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.523 -0.290 -10.286 16.208 hybrid contribution 0.505 -0.507 0.729 1.022 sum -12.017 -0.797 -9.557 15.374 Atomic orbital electron populations 1.21791 0.92724 1.02887 1.03464 1.22723 0.95369 0.81288 1.02346 1.86297 1.13883 1.29624 1.89631 1.20192 0.84329 0.91950 0.98026 1.20986 0.89569 0.98143 1.14452 1.21229 0.95137 0.84563 1.05088 1.16654 0.80472 0.86921 0.77850 1.90830 1.82374 1.16061 1.50839 1.48355 1.04607 1.09295 1.70994 1.22369 0.83543 0.92945 1.01785 1.22663 0.94859 0.96282 0.99655 0.90103 1.21566 0.94819 0.99355 1.03286 1.21158 0.88070 0.95006 0.89462 0.90353 1.42464 1.74762 1.07159 1.10545 1.19174 1.36798 0.85436 0.97276 0.90943 1.24771 1.01272 0.97183 0.96896 1.69641 1.50052 1.27195 1.10352 0.86269 0.78238 0.83479 0.78155 1.21069 1.21612 1.21156 1.23652 1.01845 0.81705 1.00450 1.46946 1.07166 1.03742 1.58799 0.69877 1.77297 0.88471 1.20521 1.30126 0.91488 0.91540 0.90286 0.91766 0.91680 0.81714 0.90604 0.90616 0.90728 0.92180 0.93494 0.77606 0.93144 0.90007 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.59 6.33 37.16 0.24 0.83 16 3 O -0.29 -3.82 10.22 -19.75 -0.20 -4.03 16 4 C 0.26 3.82 7.85 -17.27 -0.14 3.69 16 5 C -0.20 -3.01 10.63 -39.13 -0.42 -3.43 16 6 C 0.07 1.11 6.95 -82.18 -0.57 0.54 16 7 C 0.59 10.00 7.84 -12.64 -0.10 9.90 16 8 O -0.53 -10.02 17.15 5.26 0.09 -9.93 16 9 N -0.60 -9.43 3.33 -171.86 -0.57 -10.00 16 10 C 0.12 1.74 6.33 -2.52 -0.02 1.72 16 11 C -0.11 -1.61 3.51 -88.47 -0.31 -1.92 16 12 H 0.08 0.99 8.14 -51.92 -0.42 0.56 16 13 C -0.13 -1.91 8.98 37.15 0.33 -1.57 16 14 C 0.18 2.91 3.40 -66.09 -0.22 2.68 16 15 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 16 N -0.71 -15.27 4.45 -51.64 -0.23 -15.50 16 17 C -0.26 -6.31 9.96 -15.06 -0.15 -6.46 16 18 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 19 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 20 N -0.93 -26.03 13.06 55.49 0.72 -25.31 16 21 Si 0.91 20.97 29.55 -169.99 -5.02 15.94 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.05 0.75 4.86 -3.06 -0.01 0.74 16 26 N -0.44 -6.49 6.95 33.41 0.23 -6.26 16 27 H 0.45 5.97 5.00 -182.65 -0.91 5.06 16 28 N -0.32 -4.87 12.05 30.46 0.37 -4.50 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.17 2.27 8.06 -52.49 -0.42 1.84 16 35 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 36 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 37 H 0.07 1.29 6.27 -51.93 -0.33 0.96 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.39 9.10 6.25 -40.82 -0.26 8.84 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.08 1.38 7.17 -51.93 -0.37 1.01 16 43 H 0.06 0.72 7.08 -51.93 -0.37 0.35 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -29.68 355.78 -7.17 -36.85 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -6.84 Total: 11.57 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.08 Total: 5.79 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.52 Total: -61.56 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.11 Total: -13.95 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.68 -7.17 -36.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054774386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.872 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds