Wall clock time and date at job start Fri Apr 10 2020 22:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.47262 * 2 1 4 4 C 1.36002 * 117.00206 * 180.02562 * 3 2 1 5 5 C 1.39681 * 125.67109 * 179.97438 * 4 3 2 6 6 C 1.37992 * 107.63624 * 179.73016 * 5 4 3 7 7 C 1.47166 * 126.43186 * 180.22290 * 6 5 4 8 8 O 1.21622 * 120.00709 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99522 * 180.02562 * 7 6 5 10 10 C 1.47435 * 125.64618 * 180.02562 * 9 7 6 11 11 C 1.54916 * 104.82870 * 204.08499 * 10 9 7 12 12 H 1.09008 * 111.00120 * 81.06040 * 11 10 9 13 13 C 1.52993 * 111.00262 * 204.87207 * 11 10 9 14 14 C 1.55154 * 101.58224 * 322.98982 * 11 10 9 15 15 H 1.09000 * 110.72229 * 154.04574 * 14 11 10 16 16 N 1.46504 * 110.71862 * 277.13759 * 14 11 10 17 17 C 1.36936 * 120.00130 * 204.99903 * 16 14 11 18 18 H 1.08002 * 119.99489 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00024 * 179.97438 * 17 16 14 20 20 N 1.31615 * 119.99656 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99868 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46982 * 60.00072 * 21 19 17 23 23 H 1.48497 * 109.46976 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47219 * 300.00302 * 21 19 17 25 25 C 1.47022 * 125.64935 * 359.68262 * 9 7 6 26 26 N 1.36668 * 107.12862 * 0.24069 * 6 5 4 27 27 H 0.97000 * 126.09783 * 180.02562 * 26 6 5 28 28 N 1.31228 * 125.66944 * 0.15975 * 4 3 2 29 29 H 1.09002 * 109.46822 * 300.00154 * 1 2 3 30 30 H 1.09006 * 109.46961 * 60.00011 * 1 2 3 31 31 H 1.08996 * 109.46740 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47457 * 239.99787 * 2 1 3 33 33 H 1.09001 * 109.47302 * 119.99344 * 2 1 3 34 34 H 1.08002 * 126.18460 * 359.97438 * 5 4 3 35 35 H 1.08999 * 110.36265 * 322.92121 * 10 9 7 36 36 H 1.08997 * 110.36976 * 85.13966 * 10 9 7 37 37 H 1.09000 * 109.46831 * 58.55258 * 13 11 10 38 38 H 1.09004 * 109.47388 * 178.54327 * 13 11 10 39 39 H 1.08998 * 109.47400 * 298.54776 * 13 11 10 40 40 H 0.97000 * 120.00054 * 25.00249 * 16 14 11 41 41 H 0.97008 * 119.99612 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.88387 * 298.39753 * 25 9 7 43 43 H 1.08993 * 109.88010 * 59.56784 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3547 1.5255 -0.0005 5 6 4.0135 2.7572 -0.0011 6 6 5.3703 2.5056 0.0046 7 6 6.4455 3.5105 0.0108 8 8 6.1707 4.6953 0.0106 9 7 7.7347 3.1177 0.0155 10 6 8.9058 4.0135 0.0225 11 6 10.0540 3.1697 -0.5855 12 1 9.9993 3.1625 -1.6742 13 6 11.4174 3.6764 -0.1111 14 6 9.7490 1.7639 -0.0040 15 1 10.1487 0.9836 -0.6517 16 7 10.2882 1.6358 1.3521 17 6 10.5966 0.3989 1.8523 18 1 10.4426 -0.4821 1.2469 19 6 11.1080 0.2776 3.1371 20 7 11.2960 1.3513 3.8746 21 14 11.5293 -1.4097 3.8192 22 1 12.5600 -2.0472 2.9610 23 1 12.0537 -1.2680 5.2012 24 1 10.3086 -2.2551 3.8376 25 6 8.2063 1.7252 0.0219 26 7 5.5279 1.1481 0.0032 27 1 6.3724 0.6708 0.0066 28 7 4.2530 0.5689 -0.0040 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.5456 3.7306 -0.0016 35 1 8.7144 4.8927 -0.5927 36 1 9.1501 4.3106 1.0423 37 1 11.4623 3.6335 0.9772 38 1 12.2043 3.0505 -0.5321 39 1 11.5570 4.7061 -0.4402 40 1 10.4268 2.4271 1.8957 41 1 11.6538 1.2666 4.7723 42 1 7.8611 1.2210 0.9245 43 1 7.8357 1.2044 -0.8610 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054774386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:06:18 Heat of formation + Delta-G solvation = 6.667770 kcal Electronic energy + Delta-G solvation = -25580.582343 eV Core-core repulsion = 21855.900167 eV Total energy + Delta-G solvation = -3724.682176 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.67262 -41.03826 -39.41309 -39.00248 -35.82314 -34.20737 -33.01418 -32.33542 -31.58200 -31.19760 -29.49870 -27.71807 -25.94880 -25.13733 -24.04586 -22.77880 -22.36412 -21.22903 -20.75434 -19.53423 -18.91663 -18.09091 -17.55165 -17.36046 -17.14095 -16.58602 -16.38338 -15.89300 -15.57590 -15.28993 -15.15258 -14.88117 -14.68841 -14.40596 -14.25220 -13.63311 -13.58846 -13.42179 -13.36062 -13.10984 -12.91729 -12.77684 -12.67038 -12.34747 -12.20146 -12.07012 -11.96985 -11.86163 -11.47822 -11.47202 -11.32794 -10.96893 -10.38485 -9.93526 -9.74831 -9.04619 -7.93458 -5.21955 -0.14869 1.27360 1.33671 1.50595 1.51017 1.55445 1.56911 1.98491 2.23842 2.56610 3.17707 3.36726 3.49171 3.63140 3.76913 3.83960 4.04560 4.05581 4.11206 4.15881 4.32011 4.38627 4.39804 4.44362 4.57201 4.65994 4.76533 4.80715 4.90593 4.94164 4.96129 4.99403 5.05539 5.19240 5.22762 5.30522 5.55573 5.62339 5.75820 6.12644 6.20985 6.27395 6.36579 6.76294 7.36009 8.09031 8.31106 9.29135 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.003771 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.095382 B = 7422.745721 C = 9089.853602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.296 6.296 4 C 0.256 3.744 5 C -0.204 4.204 6 C 0.063 3.937 7 C 0.596 3.404 8 O -0.553 6.553 9 N -0.598 5.598 10 C 0.113 3.887 11 C -0.099 4.099 12 H 0.114 0.886 13 C -0.127 4.127 14 C 0.167 3.833 15 H 0.094 0.906 16 N -0.720 5.720 17 C -0.238 4.238 18 H 0.086 0.914 19 C -0.070 4.070 20 N -0.966 5.966 21 Si 0.965 3.035 22 H -0.276 1.276 23 H -0.304 1.304 24 H -0.281 1.281 25 C 0.058 3.942 26 N -0.439 5.439 27 H 0.453 0.547 28 N -0.327 5.327 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.174 0.826 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.039 0.961 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.376 0.624 41 H 0.249 0.751 42 H 0.063 0.937 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.199 -0.750 -12.419 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 O -0.201 6.201 4 C 0.053 3.947 5 C -0.236 4.236 6 C -0.068 4.068 7 C 0.383 3.617 8 O -0.430 6.430 9 N -0.330 5.330 10 C -0.008 4.008 11 C -0.119 4.119 12 H 0.132 0.868 13 C -0.185 4.185 14 C 0.056 3.944 15 H 0.112 0.888 16 N -0.359 5.359 17 C -0.370 4.370 18 H 0.103 0.897 19 C -0.262 4.262 20 N -0.617 5.617 21 Si 0.795 3.205 22 H -0.202 1.202 23 H -0.231 1.231 24 H -0.207 1.207 25 C -0.068 4.068 26 N -0.163 5.163 27 H 0.307 0.693 28 N -0.170 5.170 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.191 0.809 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.210 0.790 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.485 -1.327 -12.392 18.362 hybrid contribution 0.720 -0.194 1.271 1.474 sum -12.764 -1.521 -11.121 16.998 Atomic orbital electron populations 1.21817 0.90398 1.04428 1.03614 1.23009 0.97190 0.79916 1.02333 1.86314 1.12885 1.31534 1.89362 1.20304 0.85041 0.91733 0.97633 1.21194 0.89597 0.98803 1.13974 1.21091 0.95023 0.84733 1.05981 1.16765 0.80835 0.86754 0.77390 1.90812 1.82784 1.17161 1.52265 1.48396 1.04539 1.09674 1.70349 1.22410 0.83728 0.93661 1.01031 1.22631 0.94013 0.94019 1.01191 0.86789 1.21493 0.95072 1.00984 1.00967 1.21452 0.88566 0.97146 0.87254 0.88840 1.42612 1.75190 1.05732 1.12404 1.19618 1.33607 0.86937 0.96851 0.89651 1.25457 1.03116 0.99758 0.97917 1.69797 1.52675 1.28918 1.10264 0.85348 0.78059 0.80346 0.76783 1.20237 1.23131 1.20720 1.23481 1.00516 0.81530 1.01238 1.46910 1.07328 1.03360 1.58664 0.69345 1.77278 0.88639 1.20725 1.30379 0.91523 0.91188 0.88021 0.91456 0.92002 0.80900 0.89324 0.92714 0.94155 0.92151 0.91102 0.79025 0.94260 0.91842 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 71.98 0.74 -1.08 16 2 C 0.05 0.95 6.33 71.98 0.46 1.40 16 3 O -0.30 -7.46 10.22 -93.58 -0.96 -8.42 16 4 C 0.26 7.29 7.85 85.13 0.67 7.96 16 5 C -0.20 -5.95 10.63 22.56 0.24 -5.71 16 6 C 0.06 1.90 6.95 40.68 0.28 2.18 16 7 C 0.60 19.44 7.84 86.59 0.68 20.12 16 8 O -0.55 -20.75 17.15 -4.10 -0.07 -20.82 16 9 N -0.60 -17.94 3.33 -815.90 -2.71 -20.65 16 10 C 0.11 3.27 6.33 86.86 0.55 3.82 16 11 C -0.10 -2.54 3.51 -9.40 -0.03 -2.57 16 12 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 13 C -0.13 -3.49 8.98 71.98 0.65 -2.84 16 14 C 0.17 5.15 3.40 46.18 0.16 5.31 16 15 H 0.09 2.66 8.09 -2.39 -0.02 2.64 16 16 N -0.72 -30.72 4.45 -317.30 -1.41 -32.14 16 17 C -0.24 -11.59 9.96 84.03 0.84 -10.75 16 18 H 0.09 3.85 7.83 -2.91 -0.02 3.83 16 19 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 20 N -0.97 -55.85 13.06 21.65 0.28 -55.57 16 21 Si 0.96 43.39 29.55 68.60 2.03 45.42 16 22 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 C 0.06 1.63 4.86 86.73 0.42 2.05 16 26 N -0.44 -12.21 6.95 -48.20 -0.34 -12.54 16 27 H 0.45 11.24 5.00 -213.36 -1.07 10.18 16 28 N -0.33 -9.46 12.05 -170.75 -2.06 -11.51 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.17 4.63 8.06 -2.91 -0.02 4.61 16 35 H 0.09 2.35 8.04 -2.39 -0.02 2.33 16 36 H 0.05 1.82 8.04 -2.39 -0.02 1.80 16 37 H 0.04 1.40 6.27 -2.39 -0.01 1.38 16 38 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.38 17.97 6.25 -92.71 -0.58 17.39 16 41 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 42 H 0.06 2.07 7.17 -2.39 -0.02 2.05 16 43 H 0.09 2.00 7.08 -2.39 -0.02 1.98 16 Total: -1.00 -64.20 355.78 0.27 -63.93 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: -0.60 Total: 35.65 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 6.11 Total: 16.66 kcal Atomic # 7 Polarization: -126.17 SS G_CDS: -6.23 Total: -132.41 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.03 Total: -29.24 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -64.20 0.27 -63.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054774386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.598 kcal (2) G-P(sol) polarization free energy of solvation -64.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds