Wall clock time and date at job start Fri Apr 10 2020 22:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99574 * 2 1 4 4 H 1.48492 * 109.47391 * 275.19766 * 3 2 1 5 5 H 1.48504 * 109.47495 * 35.20152 * 3 2 1 6 6 H 1.48504 * 109.47008 * 155.19522 * 3 2 1 7 7 C 1.38811 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00016 * 339.28974 * 7 2 1 9 9 N 1.36939 * 119.99666 * 159.29347 * 7 2 1 10 10 C 1.46617 * 119.88969 * 333.18638 * 9 7 2 11 11 C 1.53107 * 108.00803 * 237.30729 * 10 9 7 12 12 C 1.53013 * 109.44933 * 301.02960 * 11 10 9 13 13 H 1.08999 * 113.42217 * 275.03767 * 12 11 10 14 14 C 1.54653 * 110.83256 * 143.88733 * 12 11 10 15 15 N 1.47806 * 85.78972 * 270.22922 * 14 12 11 16 16 C 1.34781 * 135.00737 * 153.79005 * 15 14 12 17 17 O 1.21607 * 119.99964 * 180.02562 * 16 15 14 18 18 C 1.47298 * 120.00247 * 0.03080 * 16 15 14 19 19 F 1.35102 * 119.99873 * 359.97438 * 18 16 15 20 20 C 1.33113 * 120.00108 * 180.02562 * 18 16 15 21 21 C 1.51450 * 126.33836 * 359.68390 * 20 18 16 22 22 C 1.54279 * 106.84663 * 180.24715 * 21 20 18 23 23 C 1.54975 * 103.66603 * 23.48019 * 22 21 20 24 24 C 1.51841 * 126.34387 * 179.97438 * 20 18 16 25 25 C 1.46810 * 89.97949 * 333.80746 * 15 14 12 26 26 H 1.08998 * 110.91507 * 274.55050 * 25 15 14 27 27 C 1.45677 * 119.88655 * 153.17168 * 9 7 2 28 28 H 0.97001 * 120.00167 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.75939 * 356.94468 * 10 9 7 30 30 H 1.09008 * 109.74704 * 117.63515 * 10 9 7 31 31 H 1.08999 * 109.47258 * 61.02243 * 11 10 9 32 32 H 1.09001 * 109.47177 * 181.03138 * 11 10 9 33 33 H 1.08997 * 113.82510 * 24.44754 * 14 12 11 34 34 H 1.09001 * 113.81707 * 155.88974 * 14 12 11 35 35 H 1.08997 * 109.98341 * 299.72497 * 21 20 18 36 36 H 1.08991 * 109.98660 * 61.03502 * 21 20 18 37 37 H 1.09006 * 110.79090 * 264.85419 * 22 21 20 38 38 H 1.09001 * 110.55848 * 141.99669 * 22 21 20 39 39 H 1.08996 * 110.83842 * 204.48936 * 23 22 21 40 40 H 1.09000 * 110.83164 * 80.91143 * 23 22 21 41 41 H 1.09002 * 110.44431 * 274.92496 * 24 20 18 42 42 H 1.09006 * 110.43746 * 37.44284 * 24 20 18 43 43 H 1.08994 * 108.72054 * 19.78042 * 27 9 7 44 44 H 1.08999 * 108.71789 * 261.75310 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3878 2.1099 -1.3942 5 1 1.5068 2.6185 0.8071 6 1 3.5983 1.4111 0.5874 7 6 2.0103 -1.2021 -0.0005 8 1 1.5227 -2.1074 0.3298 9 7 3.3134 -1.2401 -0.4199 10 6 3.8012 -0.2453 -1.3801 11 6 4.3521 -0.9928 -2.5974 12 6 5.4792 -1.9278 -2.1540 13 1 6.4506 -1.4370 -2.0931 14 6 5.4595 -3.2398 -2.9725 15 7 4.5584 -3.7548 -1.9201 16 6 3.5952 -4.6961 -1.8666 17 8 3.0051 -4.9037 -0.8238 18 6 3.2575 -5.4735 -3.0713 19 9 3.9128 -5.2426 -4.2300 20 6 2.3059 -6.4028 -3.0187 21 6 1.4884 -6.7823 -1.8015 22 6 0.5274 -7.9062 -2.2410 23 6 1.2295 -8.5264 -3.4756 24 6 1.8432 -7.2830 -4.1662 25 6 5.1470 -2.8157 -0.9573 26 1 6.0464 -3.2342 -0.5056 27 6 4.2103 -2.2687 0.0898 28 1 -0.4850 0.8400 0.0004 29 1 2.9812 0.4042 -1.6865 30 1 4.5919 0.3503 -0.9237 31 1 3.5547 -1.5771 -3.0565 32 1 4.7389 -0.2746 -3.3204 33 1 4.9853 -3.1425 -3.9491 34 1 6.4237 -3.7462 -3.0157 35 1 2.1451 -7.1399 -1.0084 36 1 0.9175 -5.9217 -1.4532 37 1 -0.4446 -7.4979 -2.5181 38 1 0.4184 -8.6479 -1.4497 39 1 0.5060 -9.0147 -4.1284 40 1 2.0088 -9.2239 -3.1686 41 1 1.0899 -6.7674 -4.7617 42 1 2.6897 -7.5725 -4.7891 43 1 3.6122 -3.0889 0.4868 44 1 4.8020 -1.8458 0.9017 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084277549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:07:23 Heat of formation + Delta-G solvation = -24.319676 kcal Electronic energy + Delta-G solvation = -26892.051301 eV Core-core repulsion = 23146.105446 eV Total energy + Delta-G solvation = -3745.945854 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.91043 -41.94058 -39.90965 -38.52362 -37.31356 -33.97039 -32.78644 -32.44113 -30.82663 -29.83855 -28.89335 -26.50392 -25.51997 -24.83892 -22.85739 -22.36867 -21.66339 -20.05650 -19.47571 -18.94114 -18.11392 -17.48801 -17.39075 -17.25893 -16.87886 -16.58497 -16.11447 -15.64802 -15.42595 -15.21294 -14.94370 -14.47866 -14.41770 -14.30246 -14.10916 -13.98150 -13.59063 -13.47552 -13.22596 -12.89720 -12.74616 -12.61599 -12.55701 -12.31436 -12.16026 -12.05729 -12.00029 -11.59071 -11.54439 -11.39693 -11.33492 -10.76186 -10.62175 -10.08940 -9.57772 -8.93444 -8.17280 -5.49629 0.06734 1.27993 1.40994 1.51664 1.69223 2.01819 2.40395 2.93176 3.02081 3.16941 3.30456 3.37278 3.64155 3.80183 3.94438 3.99618 4.08131 4.18604 4.23765 4.31266 4.38056 4.43279 4.49813 4.54223 4.58404 4.67182 4.73904 4.76392 4.82467 4.85891 4.94245 4.98298 4.99207 5.02086 5.09191 5.13800 5.16903 5.20207 5.37245 5.43231 5.53367 5.86430 6.10252 6.66821 6.93653 7.00700 7.64113 7.96322 9.03536 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.004916 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.323154 B = 5694.190082 C = 6679.348651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.043 4.043 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.313 1.313 6 H -0.251 1.251 7 C -0.247 4.247 8 H 0.025 0.975 9 N -0.610 5.610 10 C 0.117 3.883 11 C -0.113 4.113 12 C -0.097 4.097 13 H 0.143 0.857 14 C 0.109 3.891 15 N -0.636 5.636 16 C 0.556 3.444 17 O -0.559 6.559 18 C -0.022 4.022 19 F -0.132 7.132 20 C -0.074 4.074 21 C -0.082 4.082 22 C -0.124 4.124 23 C -0.111 4.111 24 C -0.092 4.092 25 C 0.123 3.877 26 H 0.121 0.879 27 C 0.142 3.858 28 H 0.261 0.739 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.039 0.961 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.629 -12.893 -11.820 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.236 4.236 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.242 1.242 6 H -0.175 1.175 7 C -0.376 4.376 8 H 0.043 0.957 9 N -0.335 5.335 10 C -0.007 4.007 11 C -0.152 4.152 12 C -0.115 4.115 13 H 0.161 0.839 14 C -0.012 4.012 15 N -0.371 5.371 16 C 0.346 3.654 17 O -0.440 6.440 18 C -0.045 4.045 19 F -0.111 7.111 20 C -0.078 4.078 21 C -0.119 4.119 22 C -0.161 4.161 23 C -0.148 4.148 24 C -0.128 4.128 25 C 0.020 3.980 26 H 0.139 0.861 27 C 0.016 3.984 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.142 0.858 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.057 0.943 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 13.106 -13.075 -11.287 21.682 hybrid contribution -0.539 0.941 0.411 1.160 sum 12.567 -12.134 -10.876 20.578 Atomic orbital electron populations 1.70023 1.07848 1.27294 1.55910 1.25999 0.95956 1.01549 1.00138 0.85652 0.78954 0.78709 0.77477 1.19677 1.24205 1.17493 1.18702 0.87205 0.92898 1.38832 0.95690 1.43869 1.07766 1.32900 1.48944 1.21391 0.97249 0.91636 0.90400 1.21778 0.96954 0.98749 0.97698 1.22897 1.00689 0.94505 0.93438 0.83914 1.23861 0.93824 0.91143 0.92368 1.49952 1.35042 1.35118 1.16943 1.18162 0.80133 0.79247 0.87846 1.90807 1.53089 1.68041 1.32021 1.18714 1.00508 1.02978 0.82250 1.91428 1.79975 1.94045 1.45620 1.23399 0.91342 0.92378 1.00656 1.21126 0.97062 0.99076 0.94626 1.22478 0.97937 0.96583 0.99099 1.22529 1.00302 0.95757 0.96212 1.21626 1.01724 0.95062 0.94436 1.22636 0.95078 0.87568 0.92711 0.86118 1.20242 0.92262 0.91225 0.94633 0.92982 0.93538 0.92878 0.94763 0.88196 0.89723 0.85813 0.90600 0.92843 0.90877 0.89644 0.88215 0.90121 0.88440 0.88883 0.94274 0.94222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.41 13.97 21.65 0.30 -64.11 16 2 C -0.04 -2.65 5.23 84.86 0.44 -2.21 16 3 Si 0.96 47.90 24.35 68.60 1.67 49.57 16 4 H -0.27 -12.42 6.68 99.48 0.66 -11.76 16 5 H -0.31 -15.83 7.11 99.48 0.71 -15.12 16 6 H -0.25 -11.57 6.53 99.48 0.65 -10.92 16 7 C -0.25 -15.36 9.99 84.03 0.84 -14.52 16 8 H 0.03 1.81 8.00 -2.91 -0.02 1.79 16 9 N -0.61 -30.55 2.79 -707.80 -1.98 -32.52 16 10 C 0.12 4.91 4.15 86.39 0.36 5.26 16 11 C -0.11 -3.60 5.66 30.63 0.17 -3.43 16 12 C -0.10 -2.34 4.39 -10.31 -0.05 -2.39 16 13 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 14 C 0.11 2.44 7.17 86.34 0.62 3.06 16 15 N -0.64 -21.22 3.34 -826.89 -2.76 -23.98 16 16 C 0.56 21.85 7.93 86.63 0.69 22.54 16 17 O -0.56 -26.38 13.23 -4.05 -0.05 -26.44 16 18 C -0.02 -0.74 7.40 23.50 0.17 -0.57 16 19 F -0.13 -3.79 15.12 44.97 0.68 -3.11 16 20 C -0.07 -2.18 6.16 -17.00 -0.10 -2.28 16 21 C -0.08 -2.49 4.82 30.52 0.15 -2.35 16 22 C -0.12 -2.58 6.87 31.70 0.22 -2.36 16 23 C -0.11 -1.75 6.94 31.92 0.22 -1.53 16 24 C -0.09 -1.83 6.45 30.86 0.20 -1.63 16 25 C 0.12 3.84 4.23 43.75 0.19 4.02 16 26 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 27 C 0.14 6.08 6.17 85.81 0.53 6.61 16 28 H 0.26 16.40 8.31 -92.71 -0.77 15.63 16 29 H 0.05 2.19 4.09 -2.39 -0.01 2.18 16 30 H 0.05 1.99 7.23 -2.38 -0.02 1.97 16 31 H 0.03 1.31 7.69 -2.39 -0.02 1.29 16 32 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 1.93 7.18 -2.39 -0.02 1.91 16 34 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 2.46 7.67 -2.39 -0.02 2.44 16 36 H 0.05 2.05 7.68 -2.39 -0.02 2.03 16 37 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.04 1.98 6.31 -2.39 -0.02 1.97 16 44 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -82.86 340.41 3.40 -79.46 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.90 Total: 12.90 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 4.64 Total: 8.23 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -4.44 Total: -120.61 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.05 Total: -26.44 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.68 Total: -3.11 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.67 Total: 49.57 kcal Total: -82.86 3.40 -79.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084277549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.136 kcal (2) G-P(sol) polarization free energy of solvation -82.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds