Wall clock time and date at job start Fri Apr 10 2020 22:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99680 * 2 1 4 4 H 1.48501 * 109.46995 * 240.00651 * 3 2 1 5 5 H 1.48497 * 109.47110 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46837 * 120.00453 * 3 2 1 7 7 C 1.38807 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00249 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99766 * 359.97438 * 7 2 1 10 10 C 1.47669 * 134.45571 * 180.02562 * 9 7 2 11 11 C 1.53507 * 85.97676 * 204.29315 * 10 9 7 12 12 C 1.47666 * 134.45853 * 359.97119 * 9 7 2 13 13 C 1.52677 * 113.57467 * 91.01602 * 11 10 9 14 14 C 1.53328 * 109.11009 * 73.80897 * 13 11 10 15 15 N 1.46887 * 108.76590 * 52.40340 * 14 13 11 16 16 C 1.34776 * 120.46613 * 124.47218 * 15 14 13 17 17 O 1.21282 * 120.00062 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00272 * 180.02562 * 16 15 14 19 19 H 1.08997 * 109.48641 * 54.96955 * 18 16 15 20 20 C 1.53097 * 109.47887 * 294.94453 * 18 16 15 21 21 C 1.53180 * 109.21119 * 182.44084 * 20 18 16 22 22 C 1.53177 * 109.03525 * 56.88485 * 21 20 18 23 23 C 1.53098 * 109.21356 * 303.11207 * 22 21 20 24 24 O 1.42898 * 109.48385 * 175.00213 * 18 16 15 25 25 C 1.46886 * 119.06925 * 304.74838 * 15 14 13 26 26 C 1.52674 * 113.56213 * 222.23369 * 11 10 9 27 27 H 0.96999 * 120.00112 * 359.97438 * 1 2 3 28 28 H 1.08993 * 113.79148 * 90.02438 * 10 9 7 29 29 H 1.09003 * 113.89446 * 318.56943 * 10 9 7 30 30 H 1.09003 * 113.78606 * 41.43523 * 12 9 7 31 31 H 1.09001 * 113.79310 * 269.97301 * 12 9 7 32 32 H 1.08993 * 109.53011 * 313.91810 * 13 11 10 33 33 H 1.08999 * 109.52811 * 193.70108 * 13 11 10 34 34 H 1.08999 * 109.58890 * 292.62147 * 14 13 11 35 35 H 1.09001 * 109.59258 * 172.18738 * 14 13 11 36 36 H 1.09002 * 109.52138 * 302.31104 * 20 18 16 37 37 H 1.09005 * 109.52063 * 62.43512 * 20 18 16 38 38 H 1.09005 * 109.49724 * 297.04659 * 21 20 18 39 39 H 1.09005 * 109.59319 * 176.78366 * 21 20 18 40 40 H 1.09002 * 109.52487 * 183.17418 * 22 21 20 41 41 H 1.09004 * 109.52023 * 63.05037 * 22 21 20 42 42 H 1.08999 * 109.47354 * 177.55660 * 23 22 21 43 43 H 1.08998 * 109.47939 * 297.58076 * 23 22 21 44 44 H 1.09002 * 109.58964 * 175.03763 * 25 15 14 45 45 H 1.08998 * 109.59002 * 295.47286 * 25 15 14 46 46 H 1.08999 * 109.53063 * 46.07664 * 26 11 10 47 47 H 1.09000 * 109.53331 * 166.30086 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.7214 -3.8107 -0.0005 11 6 0.3479 -4.0810 -0.6305 12 6 -0.1043 -2.7567 0.0005 13 6 0.3612 -4.0585 -2.1571 14 6 1.0379 -5.3344 -2.6720 15 7 0.3923 -6.4967 -2.0476 16 6 -0.1299 -7.4789 -2.8084 17 8 -0.0692 -7.4067 -4.0176 18 6 -0.7904 -8.6664 -2.1568 19 1 -1.5735 -8.3218 -1.4815 20 6 0.2526 -9.4605 -1.3660 21 6 -0.4122 -10.6988 -0.7568 22 6 -1.0480 -11.5269 -1.8776 23 6 -2.0408 -10.6530 -2.6487 24 8 -1.3632 -9.5046 -3.1625 25 6 0.3184 -6.5704 -0.5825 26 6 -0.3578 -5.3057 -0.0535 27 1 -0.4850 0.8400 0.0004 28 1 1.8388 -4.2344 0.9968 29 1 2.5596 -4.0358 -0.6600 30 1 -0.7172 -2.1421 -0.6588 31 1 -0.5291 -2.8675 0.9981 32 1 0.9156 -3.1865 -2.5038 33 1 -0.6621 -4.0128 -2.5297 34 1 2.0955 -5.3188 -2.4089 35 1 0.9294 -5.3941 -3.7550 36 1 1.0567 -9.7710 -2.0332 37 1 0.6598 -8.8360 -0.5708 38 1 -1.1826 -10.3880 -0.0510 39 1 0.3368 -11.2988 -0.2400 40 1 -1.5718 -12.3807 -1.4476 41 1 -0.2708 -11.8801 -2.5554 42 1 -2.4637 -11.2253 -3.4743 43 1 -2.8404 -10.3345 -1.9799 44 1 -0.2638 -7.4441 -0.2894 45 1 1.3243 -6.6436 -0.1690 46 1 -0.2938 -5.2843 1.0344 47 1 -1.4044 -5.3005 -0.3582 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035688981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:46 Heat of formation + Delta-G solvation = -26.355076 kcal Electronic energy + Delta-G solvation = -26812.401069 eV Core-core repulsion = 23189.827258 eV Total energy + Delta-G solvation = -3622.573811 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.76413 -39.40407 -38.18810 -35.80934 -33.94646 -32.64408 -32.06403 -30.78327 -30.16390 -27.03197 -25.87827 -25.01148 -24.35175 -23.39657 -22.93483 -21.31573 -20.61774 -19.71028 -17.87737 -16.89177 -16.73179 -16.63700 -16.02965 -15.65340 -15.01149 -14.87987 -14.69201 -14.64076 -14.42792 -13.83350 -13.78562 -13.66090 -13.29567 -12.99455 -12.72196 -12.42711 -12.34738 -12.12502 -11.77692 -11.69129 -11.46765 -11.35367 -11.10550 -11.02778 -10.85575 -10.82062 -10.74712 -10.37495 -10.15706 -9.81546 -9.70273 -9.64372 -9.43354 -9.33487 -8.77327 -8.43620 -6.84968 -5.74971 -3.06801 2.61926 2.74454 3.40087 3.44382 3.45507 3.74550 4.27329 4.45085 4.46103 4.47130 4.61909 4.70865 4.79311 4.88146 5.02142 5.08860 5.17278 5.23153 5.31521 5.33382 5.36376 5.43640 5.48253 5.51188 5.57116 5.66572 5.68765 5.72108 5.85858 5.90429 5.92065 5.96802 6.17475 6.26764 6.29921 6.43401 6.61252 6.64536 6.80887 6.83121 6.93547 7.24458 7.38346 7.46681 7.59753 8.00598 8.23124 9.06706 9.72966 10.63047 11.41883 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.036592 B = 0.002977 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.000777 B = 9401.724257 C = 9626.243355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.126 3.874 11 C -0.109 4.109 12 C 0.173 3.827 13 C -0.096 4.096 14 C 0.115 3.885 15 N -0.602 5.602 16 C 0.520 3.480 17 O -0.527 6.527 18 C 0.076 3.924 19 H 0.083 0.917 20 C -0.154 4.154 21 C -0.121 4.121 22 C -0.159 4.159 23 C 0.059 3.941 24 O -0.354 6.354 25 C 0.103 3.897 26 C -0.120 4.120 27 H 0.253 0.747 28 H 0.030 0.970 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.024 0.976 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 -22.440 0.064 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.334 5.334 10 C 0.000 4.000 11 C -0.110 4.110 12 C 0.048 3.952 13 C -0.134 4.134 14 C -0.007 4.007 15 N -0.336 5.336 16 C 0.307 3.693 17 O -0.402 6.402 18 C 0.015 3.985 19 H 0.101 0.899 20 C -0.192 4.192 21 C -0.158 4.158 22 C -0.196 4.196 23 C -0.018 4.018 24 O -0.272 6.272 25 C -0.020 4.020 26 C -0.159 4.159 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.911 -21.988 -0.804 22.194 hybrid contribution 0.422 0.911 0.684 1.215 sum -2.490 -21.077 -0.119 21.223 Atomic orbital electron populations 1.69803 1.04969 1.25366 1.56705 1.24754 0.95629 0.97415 1.02590 0.86239 0.78504 0.83356 0.77891 1.21109 1.21604 1.21294 1.18962 0.90180 0.82116 1.43762 0.90475 1.45940 1.02336 0.99145 1.86025 1.22584 0.94390 0.86651 0.96338 1.22396 0.97954 0.95489 0.95170 1.22235 0.88089 0.88377 0.96505 1.21490 1.00989 0.96842 0.94117 1.21713 0.96223 0.83980 0.98766 1.48018 1.57722 1.21091 1.06813 1.20071 0.78768 0.83218 0.87271 1.90698 1.57378 1.78207 1.13930 1.21868 0.96017 0.90330 0.90298 0.89949 1.22351 0.98617 0.97717 1.00533 1.21591 1.00373 0.96238 0.97621 1.22223 1.00113 0.98882 0.98418 1.22655 0.93628 0.86616 0.98908 1.88066 1.72292 1.35934 1.30943 1.21904 1.01598 0.99072 0.79421 1.21774 0.99677 0.93948 1.00518 0.93656 0.95213 0.94159 0.90989 0.95785 0.89385 0.92084 0.91315 0.89310 0.90396 0.89330 0.91442 0.90911 0.90712 0.90880 0.88440 0.93002 0.90044 0.90898 0.90552 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.12 11.39 55.49 0.63 -26.49 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.61 -15.10 3.53 -179.77 -0.64 -15.74 16 10 C 0.13 2.43 7.72 -3.15 -0.02 2.41 16 11 C -0.11 -1.88 0.77 -154.41 -0.12 -2.00 16 12 C 0.17 3.92 6.64 -3.15 -0.02 3.90 16 13 C -0.10 -1.64 5.22 -26.73 -0.14 -1.78 16 14 C 0.11 1.72 6.30 -3.66 -0.02 1.70 16 15 N -0.60 -8.13 2.95 -172.95 -0.51 -8.64 16 16 C 0.52 7.70 7.11 -10.99 -0.08 7.62 16 17 O -0.53 -10.00 15.90 -14.30 -0.23 -10.23 16 18 C 0.08 0.87 2.22 -27.83 -0.06 0.80 16 19 H 0.08 0.80 7.45 -51.93 -0.39 0.42 16 20 C -0.15 -1.34 4.98 -26.59 -0.13 -1.47 16 21 C -0.12 -0.80 6.03 -26.55 -0.16 -0.96 16 22 C -0.16 -1.08 6.13 -26.59 -0.16 -1.24 16 23 C 0.06 0.49 6.84 37.21 0.25 0.75 16 24 O -0.35 -4.56 9.94 -55.09 -0.55 -5.11 16 25 C 0.10 1.12 4.92 -3.90 -0.02 1.10 16 26 C -0.12 -1.59 5.24 -26.97 -0.14 -1.73 16 27 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 29 H 0.04 0.75 7.41 -51.93 -0.38 0.36 16 30 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 31 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.09 1.72 8.01 -51.93 -0.42 1.31 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.99 7.49 -51.93 -0.39 0.60 16 35 H 0.09 1.42 6.98 -51.93 -0.36 1.05 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.66 5.42 -51.93 -0.28 0.38 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.68 4.52 -51.93 -0.23 0.45 16 45 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 46 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -33.55 357.09 -9.87 -43.42 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -7.86 Total: -2.16 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -1.09 Total: 2.47 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.51 Total: -50.86 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.78 Total: -15.33 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.55 -9.87 -43.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035688981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.062 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds