Wall clock time and date at job start Fri Apr 10 2020 22:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46669 * 171.05783 * 3 2 1 5 5 C 1.36936 * 120.00114 * 95.87341 * 4 3 2 6 6 H 1.08001 * 120.00103 * 163.17036 * 5 4 3 7 7 C 1.38813 * 119.99946 * 343.44868 * 5 4 3 8 8 N 1.31625 * 119.99734 * 336.23704 * 7 5 4 9 9 Si 1.86798 * 120.00138 * 156.23457 * 7 5 4 10 10 H 1.48497 * 109.46983 * 60.00190 * 9 7 5 11 11 H 1.48498 * 109.46778 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46973 * 299.99923 * 9 7 5 13 13 C 1.46497 * 119.99808 * 275.86620 * 4 3 2 14 14 C 1.52999 * 109.47552 * 270.00394 * 13 4 3 15 15 H 1.09002 * 110.64100 * 56.68847 * 14 13 4 16 16 C 1.55157 * 110.72170 * 180.02562 * 14 13 4 17 17 C 1.54910 * 101.58020 * 153.86740 * 16 14 13 18 18 N 1.47423 * 104.83044 * 322.98674 * 17 16 14 19 19 C 1.34774 * 125.64577 * 204.09849 * 18 17 16 20 20 O 1.21517 * 120.00030 * 180.02562 * 19 18 17 21 21 O 1.34640 * 120.00431 * 0.03883 * 19 18 17 22 22 C 1.45195 * 117.00095 * 180.02562 * 21 19 18 23 23 C 1.52997 * 109.47394 * 60.00474 * 22 21 19 24 24 C 1.53007 * 109.47214 * 179.97438 * 22 21 19 25 25 C 1.52996 * 109.47148 * 299.99752 * 22 21 19 26 26 C 1.47017 * 108.70642 * 24.13088 * 18 17 16 27 27 H 4.40637 * 5.51568 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47072 * 51.06117 * 3 2 1 29 29 H 1.08997 * 109.47234 * 291.05302 * 3 2 1 30 30 H 0.96993 * 119.99715 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47368 * 30.00614 * 13 4 3 32 32 H 1.09003 * 109.47036 * 150.00586 * 13 4 3 33 33 H 1.09003 * 111.00267 * 271.93670 * 16 14 13 34 34 H 1.09002 * 111.00375 * 35.78948 * 16 14 13 35 35 H 1.09002 * 110.35999 * 204.15270 * 17 16 14 36 36 H 1.08999 * 110.36889 * 81.83259 * 17 16 14 37 37 H 1.08997 * 109.47597 * 59.99810 * 23 22 21 38 38 H 1.09002 * 109.47455 * 179.97438 * 23 22 21 39 39 H 1.09005 * 109.46972 * 299.99732 * 23 22 21 40 40 H 1.09005 * 109.46718 * 59.99825 * 24 22 21 41 41 H 1.08989 * 109.47491 * 179.97438 * 24 22 21 42 42 H 1.09002 * 109.47065 * 300.00494 * 24 22 21 43 43 H 1.08999 * 109.47096 * 60.00846 * 25 22 21 44 44 H 1.09002 * 109.46938 * 180.02562 * 25 22 21 45 45 H 1.08991 * 109.47426 * 299.99979 * 25 22 21 46 46 H 1.08996 * 109.88525 * 239.52509 * 26 18 17 47 47 H 1.08998 * 110.01212 * 118.42595 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3654 -0.2147 5 6 3.4759 2.1467 0.8566 6 1 4.0798 3.0300 0.7097 7 6 3.0515 1.8002 2.1320 8 7 1.9835 1.0469 2.2882 9 14 3.9962 2.4029 3.6266 10 1 4.0033 3.8878 3.6419 11 1 3.3437 1.8977 4.8612 12 1 5.3926 1.9017 3.5647 13 6 3.2552 1.8941 -1.5755 14 6 4.6506 1.5835 -2.1207 15 1 4.8456 0.5115 -2.0891 16 6 4.8113 2.1323 -3.5630 17 6 6.3436 2.3437 -3.6464 18 7 6.7328 2.8166 -2.3054 19 6 7.8279 3.5475 -2.0175 20 8 8.0505 3.8827 -0.8709 21 8 8.6752 3.9067 -3.0004 22 6 9.8340 4.6930 -2.6171 23 6 10.6781 3.9025 -1.6153 24 6 10.6736 5.0025 -3.8582 25 6 9.3720 6.0021 -1.9739 26 6 5.7291 2.3580 -1.3340 27 1 -1.0502 -0.0003 0.0002 28 1 3.0096 -0.6450 -0.7993 29 1 3.0095 -0.3683 0.9590 30 1 1.6867 0.8052 3.1794 31 1 2.5040 1.4298 -2.2143 32 1 3.1029 2.9734 -1.5609 33 1 4.4772 1.4008 -4.2989 34 1 4.2794 3.0762 -3.6834 35 1 6.5822 3.0962 -4.3981 36 1 6.8443 1.4035 -3.8774 37 1 11.0073 2.9700 -2.0736 38 1 11.5483 4.4927 -1.3279 39 1 10.0803 3.6817 -0.7310 40 1 10.0724 5.5655 -4.5723 41 1 11.5432 5.5932 -3.5706 42 1 11.0027 4.0697 -4.3162 43 1 8.7743 5.7813 -1.0895 44 1 10.2420 6.5926 -1.6865 45 1 8.7708 6.5652 -2.6875 46 1 5.2788 3.2152 -0.8336 47 1 6.1943 1.7018 -0.5985 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799201607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:09:53 Heat of formation + Delta-G solvation = 2.862901 kcal Electronic energy + Delta-G solvation = -26445.678054 eV Core-core repulsion = 22824.371229 eV Total energy + Delta-G solvation = -3621.306824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.63572 -38.67498 -36.59205 -35.72530 -34.04761 -32.28618 -31.55125 -30.45695 -28.72931 -27.51103 -27.42964 -26.09914 -25.86414 -23.53522 -21.55272 -21.39135 -19.65085 -19.24009 -17.69058 -17.46227 -16.68310 -16.37022 -16.14571 -15.21869 -15.06700 -14.83359 -14.33642 -13.79632 -13.72155 -13.55911 -13.24747 -13.07444 -12.90300 -12.63373 -12.48702 -12.28313 -12.06663 -11.96046 -11.86995 -11.66581 -11.42320 -11.36208 -11.25530 -11.11478 -10.86491 -10.70549 -10.47979 -10.33865 -10.26377 -10.20147 -9.85658 -9.83917 -8.93269 -8.73938 -8.44699 -8.40575 -6.99217 -5.78004 -3.17552 2.26946 3.06215 3.43207 3.48731 3.53392 4.02621 4.15431 4.38223 4.56655 4.64384 4.67669 4.80216 4.82623 4.92588 5.11625 5.33710 5.36437 5.42898 5.46071 5.53482 5.57806 5.63252 5.66907 5.70181 5.79044 5.83356 5.86235 5.90499 5.96475 6.09947 6.17899 6.25306 6.27901 6.40031 6.41670 6.48911 6.57580 6.68867 6.70883 6.87219 7.23267 7.42004 7.73827 7.79877 8.29022 8.55764 9.11212 9.19520 9.79250 10.24336 11.25795 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.016767 B = 0.003869 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.532820 B = 7235.884360 C = 8582.529293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.097 4.097 3 C 0.267 3.733 4 N -0.586 5.586 5 C -0.266 4.266 6 H 0.077 0.923 7 C 0.007 3.993 8 N -0.886 5.886 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.158 3.842 14 C -0.114 4.114 15 H 0.080 0.920 16 C -0.129 4.129 17 C 0.106 3.894 18 N -0.604 5.604 19 C 0.662 3.338 20 O -0.566 6.566 21 O -0.366 6.366 22 C 0.136 3.864 23 C -0.184 4.184 24 C -0.139 4.139 25 C -0.184 4.184 26 C 0.141 3.859 27 H 0.190 0.810 28 H 0.036 0.964 29 H 0.095 0.905 30 H 0.254 0.746 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.521 3.245 -14.424 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 C -0.099 4.099 3 C 0.142 3.858 4 N -0.306 5.306 5 C -0.395 4.395 6 H 0.095 0.905 7 C -0.192 4.192 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.209 1.209 13 C 0.030 3.970 14 C -0.136 4.136 15 H 0.098 0.902 16 C -0.168 4.168 17 C -0.017 4.017 18 N -0.345 5.345 19 C 0.417 3.583 20 O -0.455 6.455 21 O -0.281 6.281 22 C 0.099 3.901 23 C -0.241 4.241 24 C -0.196 4.196 25 C -0.241 4.241 26 C 0.022 3.978 27 H 0.207 0.793 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.675 3.399 -13.865 19.090 hybrid contribution 0.165 0.420 1.046 1.140 sum 12.839 3.819 -12.818 18.540 Atomic orbital electron populations 1.24201 0.95363 1.04781 1.07775 1.24361 0.95366 0.96089 0.94131 1.17788 0.82739 0.85584 0.99715 1.44079 1.74794 1.10888 1.00805 1.19161 1.26790 1.08345 0.85199 0.90518 1.24847 0.96279 1.00156 0.97934 1.70150 1.20628 1.40555 1.21598 0.86505 0.80123 0.78519 0.82589 1.20962 1.21806 1.20878 1.20746 0.91517 0.97932 0.86758 1.23017 0.98134 0.99664 0.92775 0.90183 1.22832 0.94084 1.02041 0.97854 1.22282 0.95788 0.99325 0.84345 1.47454 1.22440 1.53648 1.10976 1.17531 0.79709 0.78246 0.82829 1.90916 1.75318 1.58998 1.20288 1.86281 1.35177 1.68016 1.38643 1.22000 0.82484 0.90156 0.95501 1.22516 1.00389 1.00122 1.01040 1.21839 0.98969 1.02431 0.96336 1.22517 1.02697 0.95808 1.03066 1.22077 0.86589 0.99170 0.90010 0.79322 0.94579 0.88717 0.93529 0.93652 0.93015 0.90022 0.90576 0.90855 0.91658 0.92328 0.91371 0.89193 0.91607 0.90341 0.91611 0.89164 0.91379 0.92297 0.90338 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.80 19.25 29.55 0.57 -6.23 16 2 C -0.10 -2.30 11.62 -37.12 -0.43 -2.73 16 3 C 0.27 6.07 5.41 -6.83 -0.04 6.04 16 4 N -0.59 -13.45 2.44 -176.58 -0.43 -13.88 16 5 C -0.27 -6.89 8.86 -15.06 -0.13 -7.02 16 6 H 0.08 1.98 6.42 -52.49 -0.34 1.65 16 7 C 0.01 0.20 4.81 -17.43 -0.08 0.11 16 8 N -0.89 -24.93 9.60 55.49 0.53 -24.40 16 9 Si 0.89 21.83 29.61 -169.99 -5.03 16.80 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.16 2.93 5.10 -4.04 -0.02 2.91 16 14 C -0.11 -1.75 3.20 -88.78 -0.28 -2.03 16 15 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 16 C -0.13 -1.53 6.53 -24.58 -0.16 -1.69 16 17 C 0.11 1.28 6.92 -2.53 -0.02 1.27 16 18 N -0.60 -9.59 3.33 -176.30 -0.59 -10.18 16 19 C 0.66 11.23 7.93 54.05 0.43 11.65 16 20 O -0.57 -11.09 12.21 -19.29 -0.24 -11.32 16 21 O -0.37 -5.27 9.42 -40.32 -0.38 -5.65 16 22 C 0.14 1.61 1.13 -90.62 -0.10 1.51 16 23 C -0.18 -2.17 8.37 37.16 0.31 -1.86 16 24 C -0.14 -1.17 8.85 37.16 0.33 -0.84 16 25 C -0.18 -2.19 8.37 37.16 0.31 -1.88 16 26 C 0.14 2.49 5.63 -3.06 -0.02 2.47 16 27 H 0.19 3.57 7.80 -54.08 -0.42 3.15 16 28 H 0.04 0.71 8.11 -51.93 -0.42 0.28 16 29 H 0.09 2.38 6.44 -51.93 -0.33 2.05 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 31 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.05 1.00 7.96 -51.93 -0.41 0.58 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 35 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.34 5.88 -51.93 -0.31 1.04 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.51 8.14 -51.94 -0.42 0.09 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 1.36 5.88 -51.93 -0.31 1.05 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.57 6.22 -51.93 -0.32 1.25 16 47 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -30.76 376.66 -7.70 -38.46 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -7.90 Total: 2.82 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 0.66 Total: 1.67 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.48 Total: -48.45 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.62 Total: -16.97 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.76 -7.70 -38.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.322 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds