Wall clock time and date at job start Fri Apr 10 2020 22:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46963 * 2 1 4 4 H 1.08999 * 110.33278 * 52.75224 * 3 2 1 5 5 C 1.54483 * 110.36969 * 174.99909 * 3 2 1 6 6 C 1.54515 * 104.06157 * 142.92083 * 5 3 2 7 7 C 1.54482 * 104.06042 * 359.97438 * 6 5 3 8 8 H 1.09001 * 110.36666 * 94.96704 * 7 6 5 9 9 C 1.50701 * 110.37153 * 217.18582 * 7 6 5 10 10 O 1.21284 * 119.99483 * 113.45721 * 9 7 6 11 11 N 1.34776 * 120.00269 * 293.45526 * 9 7 6 12 12 C 1.46754 * 125.33433 * 359.97438 * 11 9 7 13 13 C 1.53977 * 106.67611 * 198.44495 * 12 11 9 14 14 H 1.09002 * 112.25406 * 93.84799 * 13 12 11 15 15 C 1.53676 * 109.90764 * 220.93244 * 13 12 11 16 16 N 1.46652 * 107.97185 * 93.30858 * 15 13 12 17 17 C 1.36938 * 125.33444 * 179.29028 * 16 15 13 18 18 H 1.07999 * 120.00339 * 350.02618 * 17 16 15 19 19 C 1.38817 * 119.99866 * 170.01364 * 17 16 15 20 20 N 1.31612 * 120.00002 * 350.58161 * 19 17 16 21 21 Si 1.86799 * 119.99705 * 170.57736 * 19 17 16 22 22 H 1.48505 * 109.47160 * 94.65100 * 21 19 17 23 23 H 1.48498 * 109.47114 * 214.64731 * 21 19 17 24 24 H 1.48498 * 109.47337 * 334.64808 * 21 19 17 25 25 C 1.48713 * 109.51982 * 359.16616 * 16 15 13 26 26 C 1.53975 * 105.70170 * 18.56530 * 25 16 15 27 27 H 1.09004 * 112.80070 * 94.38735 * 26 25 16 28 28 C 1.46653 * 125.33114 * 180.02562 * 11 9 7 29 29 O 1.44424 * 104.90216 * 336.07838 * 7 6 5 30 30 H 1.08998 * 109.46758 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46833 * 299.99994 * 1 2 3 32 32 H 1.09006 * 109.46875 * 60.00301 * 1 2 3 33 33 H 1.08997 * 109.47257 * 240.00314 * 2 1 3 34 34 H 1.08994 * 109.47175 * 120.00044 * 2 1 3 35 35 H 1.09000 * 110.51458 * 24.28020 * 5 3 2 36 36 H 1.08995 * 110.51262 * 261.56551 * 5 3 2 37 37 H 1.09002 * 110.51365 * 241.35704 * 6 5 3 38 38 H 1.08993 * 110.51224 * 118.64282 * 6 5 3 39 39 H 1.08999 * 110.01542 * 317.75322 * 12 11 9 40 40 H 1.08998 * 110.01698 * 79.09648 * 12 11 9 41 41 H 1.08998 * 109.76889 * 212.94165 * 15 13 12 42 42 H 1.09005 * 109.76291 * 333.67995 * 15 13 12 43 43 H 0.97003 * 120.00311 * 179.97438 * 20 19 17 44 44 H 1.09003 * 110.28668 * 259.68100 * 25 16 15 45 45 H 1.08997 * 110.69115 * 137.66698 * 25 16 15 46 46 H 1.08994 * 109.77049 * 59.66654 * 28 11 9 47 47 H 1.09000 * 109.78062 * 298.93096 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5830 2.0058 0.8136 5 6 3.5794 1.4686 0.1262 6 6 4.0105 2.6438 -0.7796 7 6 2.6805 3.1882 -1.3464 8 1 2.3224 4.0206 -0.7406 9 6 2.8591 3.6219 -2.7786 10 8 2.2928 3.0232 -3.6685 11 7 3.6479 4.6749 -3.0706 12 6 4.3851 5.4807 -2.0903 13 6 4.7461 6.8047 -2.7887 14 1 4.0085 7.5850 -2.6009 15 6 6.1782 7.2193 -2.4162 16 7 7.0828 6.6970 -3.4456 17 6 8.4406 6.8724 -3.4697 18 1 8.9081 7.5636 -2.7840 19 6 9.2163 6.1618 -4.3754 20 7 8.6792 5.1890 -5.0807 21 14 11.0223 6.5864 -4.5933 22 1 11.8459 5.7054 -3.7267 23 1 11.4100 6.3868 -6.0128 24 1 11.2468 8.0043 -4.2135 25 6 6.2988 5.9433 -4.4599 26 6 4.8405 6.4066 -4.2880 27 1 4.5735 7.2204 -4.9624 28 6 3.9033 5.1957 -4.4176 29 8 1.7611 2.0773 -1.2683 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 4.0080 0.5329 -0.2325 36 1 3.8749 1.6541 1.1589 37 1 4.6522 2.2890 -1.5861 38 1 4.5190 3.4102 -0.1948 39 1 3.7577 5.6764 -1.2208 40 1 5.2925 4.9594 -1.7856 41 1 6.2496 8.3063 -2.3798 42 1 6.4427 6.7997 -1.4455 43 1 9.2211 4.6926 -5.7139 44 1 6.3740 4.8716 -4.2758 45 1 6.6477 6.1748 -5.4662 46 1 2.9645 5.5033 -4.8780 47 1 4.3777 4.4263 -5.0267 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048850742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:07:48 Heat of formation + Delta-G solvation = -56.825448 kcal Electronic energy + Delta-G solvation = -26668.946749 eV Core-core repulsion = 23045.051643 eV Total energy + Delta-G solvation = -3623.895105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58023 -39.38421 -37.78694 -34.93497 -33.80759 -32.54941 -32.04119 -30.55283 -29.52106 -28.59851 -25.67255 -25.54612 -24.36949 -22.76741 -21.81034 -21.16174 -20.25915 -19.41974 -19.19628 -17.32317 -16.81437 -16.54961 -16.22250 -15.61801 -15.36874 -14.63973 -14.33370 -14.09573 -13.86309 -13.73876 -13.65701 -13.34623 -13.25556 -12.96346 -12.65633 -12.17817 -11.96314 -11.89981 -11.79920 -11.72547 -11.59364 -11.50424 -11.15184 -10.93777 -10.86569 -10.84290 -10.79038 -10.49757 -10.12595 -10.08490 -10.03122 -9.95191 -9.67310 -9.44257 -8.63852 -8.37954 -6.85770 -5.79138 -3.12198 2.73800 2.88406 3.36619 3.42892 3.44765 3.86735 4.30776 4.41097 4.45580 4.65873 4.69826 4.78368 4.89874 4.92672 4.99628 5.08517 5.13809 5.20143 5.34157 5.44740 5.46012 5.52782 5.57721 5.61313 5.61428 5.66473 5.74050 5.79970 5.84727 5.90948 5.93642 5.95965 6.12952 6.14491 6.21132 6.30744 6.46054 6.47469 6.60050 6.71202 6.79241 7.42097 7.53558 7.69611 7.72823 8.18501 8.32893 9.12809 9.76337 10.41792 11.33937 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.021469 B = 0.003321 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.878236 B = 8430.348438 C = 8890.187852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.070 3.930 4 H 0.070 0.930 5 C -0.149 4.149 6 C -0.144 4.144 7 C 0.065 3.935 8 H 0.091 0.909 9 C 0.532 3.468 10 O -0.527 6.527 11 N -0.606 5.606 12 C 0.107 3.893 13 C -0.107 4.107 14 H 0.089 0.911 15 C 0.149 3.851 16 N -0.603 5.603 17 C -0.232 4.232 18 H 0.076 0.924 19 C -0.005 4.005 20 N -0.917 5.917 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.185 3.815 26 C -0.123 4.123 27 H 0.092 0.908 28 C 0.121 3.879 29 O -0.340 6.340 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.026 0.974 42 H 0.025 0.975 43 H 0.253 0.747 44 H 0.039 0.961 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.198 -4.074 11.691 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.012 3.988 4 H 0.088 0.912 5 C -0.186 4.186 6 C -0.182 4.182 7 C 0.003 3.997 8 H 0.109 0.891 9 C 0.319 3.681 10 O -0.403 6.403 11 N -0.341 5.341 12 C -0.015 4.015 13 C -0.127 4.127 14 H 0.107 0.893 15 C 0.022 3.978 16 N -0.330 5.330 17 C -0.361 4.361 18 H 0.094 0.906 19 C -0.202 4.202 20 N -0.563 5.563 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.060 3.940 26 C -0.143 4.143 27 H 0.111 0.889 28 C -0.001 4.001 29 O -0.259 6.259 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.540 -4.631 10.949 18.019 hybrid contribution 1.220 0.303 0.055 1.258 sum -12.321 -4.328 11.004 17.077 Atomic orbital electron populations 1.21742 0.95259 1.01563 1.02315 1.21579 0.96777 0.94253 1.02831 1.23153 0.94284 0.94593 0.86729 0.91187 1.22998 0.95680 0.99471 1.00501 1.22914 0.96602 0.98537 1.00181 1.22733 0.90979 0.91742 0.94212 0.89150 1.19745 0.78768 0.79362 0.90240 1.90709 1.47312 1.53725 1.48559 1.48161 1.46646 1.30132 1.09135 1.22227 0.96162 0.91768 0.91378 1.22778 0.98423 0.95691 0.95761 0.89290 1.21008 0.87329 0.96674 0.92770 1.44690 1.02641 1.62503 1.23186 1.18997 0.80727 1.19130 1.17210 0.90595 1.24819 0.98101 0.97249 1.00054 1.69945 1.35158 1.22477 1.28735 0.86145 0.84778 0.77866 0.77202 1.21645 1.21619 1.20607 1.21503 0.83286 0.94986 0.94211 1.23202 0.98973 0.96230 0.95886 0.88935 1.21767 0.98569 0.96294 0.83484 1.89290 1.56492 1.42704 1.37365 0.92760 0.92941 0.91844 0.90840 0.90649 0.90197 0.90135 0.89839 0.89372 0.91588 0.90459 0.95656 0.95716 0.93644 0.94285 0.92129 0.92125 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.85 37.16 0.37 -0.97 16 2 C -0.12 -1.07 5.56 -26.73 -0.15 -1.22 16 3 C 0.07 0.73 3.24 -25.95 -0.08 0.64 16 4 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 5 C -0.15 -1.43 6.63 -25.16 -0.17 -1.59 16 6 C -0.14 -1.68 5.72 -25.16 -0.14 -1.83 16 7 C 0.06 0.87 3.01 -27.10 -0.08 0.78 16 8 H 0.09 1.00 7.71 -51.93 -0.40 0.60 16 9 C 0.53 9.08 7.12 -10.99 -0.08 9.00 16 10 O -0.53 -11.09 16.86 -13.65 -0.23 -11.32 16 11 N -0.61 -9.80 3.31 -172.34 -0.57 -10.37 16 12 C 0.11 1.54 5.01 -3.39 -0.02 1.52 16 13 C -0.11 -1.65 4.05 -88.48 -0.36 -2.01 16 14 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 15 C 0.15 2.80 6.61 -3.61 -0.02 2.78 16 16 N -0.60 -14.54 3.43 -170.29 -0.58 -15.12 16 17 C -0.23 -6.23 10.22 -15.06 -0.15 -6.38 16 18 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 19 C -0.01 -0.14 5.41 -17.43 -0.09 -0.24 16 20 N -0.92 -26.29 10.62 55.49 0.59 -25.70 16 21 Si 0.91 21.59 29.56 -169.99 -5.03 16.56 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.18 4.22 4.68 -2.31 -0.01 4.21 16 26 C -0.12 -2.14 4.04 -88.48 -0.36 -2.50 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 28 C 0.12 2.06 6.20 -3.61 -0.02 2.03 16 29 O -0.34 -4.94 10.41 -54.44 -0.57 -5.51 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.68 8.01 -51.93 -0.42 0.26 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.16 7.86 -51.93 -0.41 0.75 16 38 H 0.09 0.88 7.78 -51.93 -0.40 0.47 16 39 H 0.07 0.74 7.50 -51.93 -0.39 0.35 16 40 H 0.08 1.23 7.31 -51.93 -0.38 0.85 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.03 0.46 7.66 -51.93 -0.40 0.06 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.04 1.00 7.27 -51.93 -0.38 0.62 16 45 H 0.06 1.56 7.26 -51.93 -0.38 1.18 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.07 1.38 7.62 -51.93 -0.40 0.98 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -32.47 364.31 -10.40 -42.88 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -8.13 Total: -1.13 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -1.38 Total: 4.22 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.56 Total: -51.19 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.80 Total: -16.83 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.47 -10.40 -42.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048850742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.949 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds