Wall clock time and date at job start Fri Apr 10 2020 22:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46963 * 2 1 4 4 H 1.08999 * 110.33278 * 52.75224 * 3 2 1 5 5 C 1.54483 * 110.36969 * 174.99909 * 3 2 1 6 6 C 1.54515 * 104.06157 * 142.92083 * 5 3 2 7 7 C 1.54482 * 104.06042 * 359.97438 * 6 5 3 8 8 H 1.09001 * 110.36666 * 94.96704 * 7 6 5 9 9 C 1.50701 * 110.37153 * 217.18582 * 7 6 5 10 10 O 1.21284 * 119.99483 * 113.45721 * 9 7 6 11 11 N 1.34776 * 120.00269 * 293.45526 * 9 7 6 12 12 C 1.46754 * 125.33433 * 359.97438 * 11 9 7 13 13 C 1.53977 * 106.67611 * 198.44495 * 12 11 9 14 14 H 1.09002 * 112.25406 * 93.84799 * 13 12 11 15 15 C 1.53676 * 109.90764 * 220.93244 * 13 12 11 16 16 N 1.46652 * 107.97185 * 93.30858 * 15 13 12 17 17 C 1.36938 * 125.33444 * 179.29028 * 16 15 13 18 18 H 1.07999 * 120.00339 * 350.02618 * 17 16 15 19 19 C 1.38817 * 119.99866 * 170.01364 * 17 16 15 20 20 N 1.31612 * 120.00002 * 350.58161 * 19 17 16 21 21 Si 1.86799 * 119.99705 * 170.57736 * 19 17 16 22 22 H 1.48505 * 109.47160 * 94.65100 * 21 19 17 23 23 H 1.48498 * 109.47114 * 214.64731 * 21 19 17 24 24 H 1.48498 * 109.47337 * 334.64808 * 21 19 17 25 25 C 1.48713 * 109.51982 * 359.16616 * 16 15 13 26 26 C 1.53975 * 105.70170 * 18.56530 * 25 16 15 27 27 H 1.09004 * 112.80070 * 94.38735 * 26 25 16 28 28 C 1.46653 * 125.33114 * 180.02562 * 11 9 7 29 29 O 1.44424 * 104.90216 * 336.07838 * 7 6 5 30 30 H 1.08998 * 109.46758 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46833 * 299.99994 * 1 2 3 32 32 H 1.09006 * 109.46875 * 60.00301 * 1 2 3 33 33 H 1.08997 * 109.47257 * 240.00314 * 2 1 3 34 34 H 1.08994 * 109.47175 * 120.00044 * 2 1 3 35 35 H 1.09000 * 110.51458 * 24.28020 * 5 3 2 36 36 H 1.08995 * 110.51262 * 261.56551 * 5 3 2 37 37 H 1.09002 * 110.51365 * 241.35704 * 6 5 3 38 38 H 1.08993 * 110.51224 * 118.64282 * 6 5 3 39 39 H 1.08999 * 110.01542 * 317.75322 * 12 11 9 40 40 H 1.08998 * 110.01698 * 79.09648 * 12 11 9 41 41 H 1.08998 * 109.76889 * 212.94165 * 15 13 12 42 42 H 1.09005 * 109.76291 * 333.67995 * 15 13 12 43 43 H 0.97003 * 120.00311 * 179.97438 * 20 19 17 44 44 H 1.09003 * 110.28668 * 259.68100 * 25 16 15 45 45 H 1.08997 * 110.69115 * 137.66698 * 25 16 15 46 46 H 1.08994 * 109.77049 * 59.66654 * 28 11 9 47 47 H 1.09000 * 109.78062 * 298.93096 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5830 2.0058 0.8136 5 6 3.5794 1.4686 0.1262 6 6 4.0105 2.6438 -0.7796 7 6 2.6805 3.1882 -1.3464 8 1 2.3224 4.0206 -0.7406 9 6 2.8591 3.6219 -2.7786 10 8 2.2928 3.0232 -3.6685 11 7 3.6479 4.6749 -3.0706 12 6 4.3851 5.4807 -2.0903 13 6 4.7461 6.8047 -2.7887 14 1 4.0085 7.5850 -2.6009 15 6 6.1782 7.2193 -2.4162 16 7 7.0828 6.6970 -3.4456 17 6 8.4406 6.8724 -3.4697 18 1 8.9081 7.5636 -2.7840 19 6 9.2163 6.1618 -4.3754 20 7 8.6792 5.1890 -5.0807 21 14 11.0223 6.5864 -4.5933 22 1 11.8459 5.7054 -3.7267 23 1 11.4100 6.3868 -6.0128 24 1 11.2468 8.0043 -4.2135 25 6 6.2988 5.9433 -4.4599 26 6 4.8405 6.4066 -4.2880 27 1 4.5735 7.2204 -4.9624 28 6 3.9033 5.1957 -4.4176 29 8 1.7611 2.0773 -1.2683 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 4.0080 0.5329 -0.2325 36 1 3.8749 1.6541 1.1589 37 1 4.6522 2.2890 -1.5861 38 1 4.5190 3.4102 -0.1948 39 1 3.7577 5.6764 -1.2208 40 1 5.2925 4.9594 -1.7856 41 1 6.2496 8.3063 -2.3798 42 1 6.4427 6.7997 -1.4455 43 1 9.2211 4.6926 -5.7139 44 1 6.3740 4.8716 -4.2758 45 1 6.6477 6.1748 -5.4662 46 1 2.9645 5.5033 -4.8780 47 1 4.3777 4.4263 -5.0267 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048850742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:07:48 Heat of formation + Delta-G solvation = -76.790748 kcal Electronic energy + Delta-G solvation = -26669.812509 eV Core-core repulsion = 23045.051643 eV Total energy + Delta-G solvation = -3624.760866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.80438 -40.53990 -39.15416 -36.57463 -34.62467 -34.16168 -33.20247 -31.94949 -31.14784 -29.64359 -27.29762 -27.04456 -25.57551 -24.06613 -22.74967 -21.98918 -21.88891 -20.78318 -20.52268 -18.83781 -18.36718 -17.48858 -17.44176 -16.86105 -16.67445 -16.42432 -15.67735 -15.46535 -15.12235 -14.81922 -14.69823 -14.52874 -14.40307 -14.10093 -14.00130 -13.59431 -13.45411 -13.35741 -13.20553 -12.88522 -12.71955 -12.70587 -12.61668 -12.38329 -11.99876 -11.92115 -11.87164 -11.83268 -11.75235 -11.59050 -11.48312 -11.38761 -11.03654 -10.70791 -10.62367 -9.72645 -8.83353 -7.86846 -5.20643 1.44151 1.46520 1.47859 1.57251 1.69968 2.50632 2.90251 3.23282 3.33540 3.44874 3.51817 3.58929 3.81966 3.84367 3.93110 3.94032 4.10315 4.15839 4.24386 4.28473 4.33585 4.36888 4.52113 4.53778 4.57074 4.70092 4.73444 4.82065 4.86927 4.90290 4.92774 4.97960 5.02419 5.07978 5.11445 5.12143 5.16438 5.24692 5.41825 5.42793 5.49820 5.59193 5.73275 5.82472 6.20080 6.42182 7.01944 7.08022 7.78634 8.43623 9.25070 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.021469 B = 0.003321 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.878236 B = 8430.348438 C = 8890.187852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.065 3.935 4 H 0.095 0.905 5 C -0.143 4.143 6 C -0.143 4.143 7 C 0.069 3.931 8 H 0.127 0.873 9 C 0.524 3.476 10 O -0.579 6.579 11 N -0.604 5.604 12 C 0.108 3.892 13 C -0.091 4.091 14 H 0.134 0.866 15 C 0.142 3.858 16 N -0.625 5.625 17 C -0.237 4.237 18 H 0.084 0.916 19 C -0.066 4.066 20 N -0.950 5.950 21 Si 0.973 3.027 22 H -0.288 1.288 23 H -0.298 1.298 24 H -0.266 1.266 25 C 0.197 3.803 26 C -0.111 4.111 27 H 0.111 0.889 28 C 0.124 3.876 29 O -0.375 6.375 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.049 0.951 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.058 0.942 41 H 0.039 0.961 42 H 0.035 0.965 43 H 0.245 0.755 44 H -0.001 1.001 45 H 0.019 0.981 46 H 0.077 0.923 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.241 -2.466 15.095 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C 0.008 3.992 4 H 0.113 0.887 5 C -0.181 4.181 6 C -0.181 4.181 7 C 0.008 3.992 8 H 0.144 0.856 9 C 0.313 3.687 10 O -0.459 6.459 11 N -0.338 5.338 12 C -0.014 4.014 13 C -0.110 4.110 14 H 0.152 0.848 15 C 0.017 3.983 16 N -0.352 5.352 17 C -0.367 4.367 18 H 0.102 0.898 19 C -0.259 4.259 20 N -0.599 5.599 21 Si 0.802 3.198 22 H -0.215 1.215 23 H -0.225 1.225 24 H -0.191 1.191 25 C 0.072 3.928 26 C -0.131 4.131 27 H 0.129 0.871 28 C 0.001 3.999 29 O -0.294 6.294 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.131 0.869 37 H 0.068 0.932 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.017 0.983 45 H 0.038 0.962 46 H 0.095 0.905 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.584 -2.982 14.408 20.716 hybrid contribution 1.552 -0.210 -0.992 1.853 sum -13.032 -3.192 13.416 18.974 Atomic orbital electron populations 1.21725 0.95111 1.02087 1.01765 1.21637 0.96935 0.93873 1.03101 1.23443 0.94890 0.95118 0.85757 0.88724 1.23023 0.95119 0.98230 1.01695 1.22925 0.95415 1.00033 0.99726 1.22850 0.91893 0.92770 0.91642 0.85575 1.20586 0.77782 0.78631 0.91681 1.90676 1.49511 1.55249 1.50449 1.48234 1.46252 1.30220 1.09081 1.22345 0.96274 0.90521 0.92227 1.22842 0.97430 0.97337 0.93373 0.84828 1.21245 0.88245 0.97120 0.91696 1.45002 1.02683 1.62491 1.25014 1.19411 0.82404 1.18328 1.16510 0.89833 1.25629 1.02142 0.97656 1.00501 1.70170 1.36238 1.23834 1.29619 0.85141 0.80120 0.78179 0.76360 1.21535 1.22534 1.19056 1.21142 0.86765 0.92864 0.92064 1.23010 0.94897 0.96711 0.98453 0.87055 1.21630 0.98809 0.95249 0.84212 1.89277 1.56982 1.43438 1.39737 0.91786 0.91370 0.94405 0.92952 0.87948 0.90908 0.86945 0.93247 0.86991 0.86748 0.92322 0.94335 0.94709 0.94618 0.98319 0.96226 0.90494 0.94093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.85 71.98 0.71 -1.72 16 2 C -0.12 -1.97 5.56 30.60 0.17 -1.80 16 3 C 0.06 1.19 3.24 31.10 0.10 1.29 16 4 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 5 C -0.14 -2.39 6.63 31.61 0.21 -2.18 16 6 C -0.14 -3.09 5.72 31.61 0.18 -2.91 16 7 C 0.07 1.72 3.01 30.35 0.09 1.82 16 8 H 0.13 2.23 7.71 -2.39 -0.02 2.22 16 9 C 0.52 17.77 7.12 87.66 0.62 18.40 16 10 O -0.58 -25.23 16.86 15.33 0.26 -24.97 16 11 N -0.60 -18.98 3.31 -817.56 -2.71 -21.69 16 12 C 0.11 2.77 5.01 86.66 0.43 3.21 16 13 C -0.09 -2.49 4.05 -9.41 -0.04 -2.52 16 14 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 15 C 0.14 4.98 6.61 86.58 0.57 5.56 16 16 N -0.63 -30.17 3.43 -692.69 -2.37 -32.54 16 17 C -0.24 -12.78 10.22 84.03 0.86 -11.92 16 18 H 0.08 4.27 7.85 -2.91 -0.02 4.24 16 19 C -0.07 -3.70 5.41 84.86 0.46 -3.24 16 20 N -0.95 -57.14 10.62 21.65 0.23 -56.91 16 21 Si 0.97 45.17 29.56 68.60 2.03 47.20 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 C 0.20 9.34 4.68 86.28 0.40 9.74 16 26 C -0.11 -3.77 4.04 -9.41 -0.04 -3.81 16 27 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 28 C 0.12 4.24 6.20 86.58 0.54 4.78 16 29 O -0.38 -10.56 10.41 -130.61 -1.36 -11.92 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.04 0.80 8.01 -2.38 -0.02 0.78 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.31 7.87 -2.39 -0.02 1.30 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.40 7.86 -2.39 -0.02 1.38 16 38 H 0.11 1.85 7.78 -2.39 -0.02 1.83 16 39 H 0.11 1.90 7.50 -2.39 -0.02 1.88 16 40 H 0.06 1.76 7.31 -2.39 -0.02 1.74 16 41 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.03 1.18 7.66 -2.38 -0.02 1.16 16 43 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.00 -0.07 7.27 -2.39 -0.02 -0.09 16 45 H 0.02 1.06 7.26 -2.39 -0.02 1.04 16 46 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.04 1.65 7.62 -2.39 -0.02 1.63 16 Total: -1.00 -76.40 364.31 2.28 -74.12 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.93 Total: 12.05 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 5.27 Total: 14.67 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -4.85 Total: -111.14 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -1.10 Total: -36.89 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -76.40 2.28 -74.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048850742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.672 kcal (2) G-P(sol) polarization free energy of solvation -76.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds