Wall clock time and date at job start Fri Apr 10 2020 22:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08998 * 109.82549 * 54.11188 * 3 2 1 5 5 C 1.54379 * 109.82800 * 175.00005 * 3 2 1 6 6 C 1.55309 * 102.25540 * 140.86666 * 5 3 2 7 7 C 1.54951 * 100.94153 * 325.86821 * 6 5 3 8 8 H 1.08999 * 110.30791 * 277.52506 * 7 6 5 9 9 C 1.50693 * 110.31059 * 155.45549 * 7 6 5 10 10 O 1.21284 * 119.99840 * 244.99833 * 9 7 6 11 11 N 1.34772 * 120.00023 * 65.00194 * 9 7 6 12 12 C 1.46741 * 125.33024 * 359.69120 * 11 9 7 13 13 C 1.54102 * 106.63803 * 161.58718 * 12 11 9 14 14 H 1.08996 * 113.49649 * 151.36640 * 13 12 11 15 15 C 1.53959 * 109.44382 * 278.64246 * 13 12 11 16 16 N 1.46776 * 106.62838 * 138.17367 * 15 13 12 17 17 C 1.36935 * 125.34174 * 161.51493 * 16 15 13 18 18 H 1.08003 * 119.99830 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00328 * 180.02562 * 17 16 15 20 20 N 1.31618 * 119.99975 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99961 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47362 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46908 * 119.99990 * 21 19 17 24 24 H 1.48507 * 109.46839 * 239.99844 * 21 19 17 25 25 C 1.46665 * 109.32298 * 341.48353 * 16 15 13 26 26 C 1.53725 * 107.94337 * 0.54080 * 25 16 15 27 27 H 1.09004 * 113.06149 * 140.00132 * 26 25 16 28 28 C 1.46648 * 125.32910 * 180.02562 * 11 9 7 29 29 O 1.43236 * 109.82871 * 293.13179 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 34 34 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 35 35 H 1.08994 * 110.85092 * 259.05563 * 5 3 2 36 36 H 1.09004 * 110.85017 * 22.67728 * 5 3 2 37 37 H 1.08995 * 111.12214 * 83.78244 * 6 5 3 38 38 H 1.08995 * 111.12934 * 207.94443 * 6 5 3 39 39 H 1.09005 * 110.00808 * 281.01203 * 12 11 9 40 40 H 1.09000 * 110.01064 * 42.38167 * 12 11 9 41 41 H 1.08999 * 110.02738 * 257.46899 * 15 13 12 42 42 H 1.09002 * 110.03138 * 18.88438 * 15 13 12 43 43 H 0.96998 * 120.00037 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.77452 * 240.92108 * 25 16 15 45 45 H 1.09000 * 109.77911 * 120.16574 * 25 16 15 46 46 H 1.08999 * 109.75901 * 300.43411 * 28 11 9 47 47 H 1.08996 * 109.76324 * 61.14837 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9914 0.8307 5 6 3.5785 1.4540 0.1266 6 6 3.9799 2.6053 -0.8354 7 6 2.8994 2.4588 -1.9364 8 1 3.1864 1.6842 -2.6474 9 6 2.6964 3.7715 -2.6480 10 8 1.6331 4.3490 -2.5635 11 7 3.6962 4.3039 -3.3782 12 6 5.0269 3.7110 -3.5546 13 6 5.6481 4.3823 -4.7948 14 1 6.7367 4.4281 -4.7647 15 6 5.1091 3.7052 -6.0681 16 7 4.8293 4.7792 -7.0286 17 6 4.6815 4.6147 -8.3800 18 1 4.7698 3.6310 -8.8170 19 6 4.4182 5.7121 -9.1882 20 7 4.3110 6.9110 -8.6557 21 14 4.2159 5.4874 -11.0316 22 1 4.3821 4.0526 -11.3766 23 1 2.8624 5.9417 -11.4400 24 1 5.2431 6.2895 -11.7436 25 6 4.7320 6.0562 -6.3139 26 6 4.9755 5.7831 -4.8209 27 1 5.5819 6.5506 -4.3398 28 6 3.6269 5.5697 -4.1154 29 8 1.7028 2.0770 -1.2391 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8820 1.6792 1.1489 36 1 4.0022 0.5060 -0.2051 37 1 3.9076 3.5738 -0.3406 38 1 4.9788 2.4475 -1.2418 39 1 5.6412 3.9053 -2.6753 40 1 4.9380 2.6370 -3.7181 41 1 5.8580 3.0260 -6.4753 42 1 4.1933 3.1592 -5.8415 43 1 4.1266 7.6778 -9.2203 44 1 3.7384 6.4822 -6.4535 45 1 5.4859 6.7478 -6.6901 46 1 2.8278 5.5221 -4.8551 47 1 3.4392 6.3899 -3.4225 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048850743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:07:53 Heat of formation + Delta-G solvation = -55.163776 kcal Electronic energy + Delta-G solvation = -26612.260875 eV Core-core repulsion = 22988.437825 eV Total energy + Delta-G solvation = -3623.823050 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.65981 -39.49185 -37.80218 -35.01554 -33.76949 -32.63134 -32.03083 -30.41772 -29.69822 -28.72564 -25.72031 -25.51456 -24.29192 -22.83250 -22.00287 -21.06656 -20.20915 -19.40966 -19.28663 -17.75221 -16.90503 -16.43924 -16.05690 -15.62965 -15.37650 -14.73974 -14.38953 -14.34992 -13.84243 -13.70571 -13.40860 -13.29689 -13.21853 -12.96018 -12.77877 -12.18842 -12.11805 -11.98686 -11.82437 -11.75620 -11.63985 -11.44622 -11.21941 -11.12304 -10.94098 -10.90165 -10.82589 -10.38317 -10.10663 -10.03568 -9.97828 -9.91046 -9.68312 -9.32228 -8.62679 -8.37509 -6.84843 -5.73659 -3.07172 2.70982 2.90127 3.39552 3.45119 3.47583 3.75336 4.13364 4.37551 4.43516 4.47417 4.71528 4.79086 4.79873 4.89005 4.96404 5.06296 5.12909 5.19361 5.24686 5.37637 5.43313 5.48828 5.51955 5.53833 5.59820 5.62898 5.68116 5.72985 5.75859 5.76391 5.91653 6.00311 6.10561 6.13410 6.26054 6.32162 6.49386 6.58904 6.67581 6.81104 6.83483 7.52601 7.55137 7.70479 7.79564 8.24739 8.34207 9.20762 9.81140 10.44652 11.38066 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.003131 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.191465 B = 8941.154427 C = 9278.281651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.076 3.924 4 H 0.081 0.919 5 C -0.149 4.149 6 C -0.145 4.145 7 C 0.070 3.930 8 H 0.095 0.905 9 C 0.525 3.475 10 O -0.525 6.525 11 N -0.606 5.606 12 C 0.108 3.892 13 C -0.110 4.110 14 H 0.099 0.901 15 C 0.144 3.856 16 N -0.602 5.602 17 C -0.229 4.229 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.186 3.814 26 C -0.122 4.122 27 H 0.089 0.911 28 C 0.120 3.880 29 O -0.345 6.345 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.035 0.965 42 H 0.017 0.983 43 H 0.252 0.748 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.076 0.924 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 -11.139 19.497 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.018 3.982 4 H 0.099 0.901 5 C -0.187 4.187 6 C -0.183 4.183 7 C 0.009 3.991 8 H 0.113 0.887 9 C 0.312 3.688 10 O -0.400 6.400 11 N -0.341 5.341 12 C -0.015 4.015 13 C -0.130 4.130 14 H 0.118 0.882 15 C 0.018 3.982 16 N -0.329 5.329 17 C -0.357 4.357 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.743 3.257 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.062 3.938 26 C -0.142 4.142 27 H 0.107 0.893 28 C -0.002 4.002 29 O -0.264 6.264 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.035 0.965 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.640 -10.702 19.324 22.151 hybrid contribution 0.135 -0.105 -0.955 0.970 sum 1.774 -10.807 18.369 21.386 Atomic orbital electron populations 1.21715 0.95184 1.01353 1.02559 1.21906 0.97186 0.95548 1.02330 1.22878 0.94236 0.93659 0.87427 0.90103 1.23193 0.95353 0.99271 1.00879 1.23266 0.99190 1.00130 0.95731 1.22741 0.86331 0.94770 0.95300 0.88741 1.19974 0.83181 0.86380 0.79225 1.90719 1.25289 1.62223 1.61789 1.48183 1.13053 1.23713 1.49197 1.22064 0.83501 0.97914 0.98058 1.22969 0.99843 0.95789 0.94349 0.88236 1.21245 0.96568 0.91954 0.88448 1.44221 1.83958 1.01946 1.02733 1.19083 1.41867 0.93958 0.80807 0.90371 1.24805 1.01896 0.95418 0.98272 1.69956 1.55332 0.98071 1.33546 0.86033 0.77385 0.77287 0.84978 1.20518 1.21721 1.21744 1.21043 1.01155 0.88390 0.83259 1.23142 0.94173 0.96637 1.00221 0.89308 1.21986 0.99033 0.84370 0.94797 1.88575 1.27350 1.77837 1.32596 0.91732 0.92950 0.92910 0.91388 0.91077 0.89678 0.89964 0.89839 0.88843 0.91728 0.91033 0.94670 0.96536 0.93727 0.93247 0.93284 0.90593 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.83 37.16 0.37 -0.99 16 2 C -0.13 -1.09 5.50 -26.73 -0.15 -1.24 16 3 C 0.08 0.74 3.51 -26.01 -0.09 0.65 16 4 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.15 -1.08 6.54 -24.78 -0.16 -1.24 16 6 C -0.15 -1.30 5.85 -24.48 -0.14 -1.44 16 7 C 0.07 0.88 3.17 -26.86 -0.09 0.80 16 8 H 0.10 1.08 7.78 -51.93 -0.40 0.67 16 9 C 0.53 8.83 7.24 -10.99 -0.08 8.75 16 10 O -0.52 -11.20 16.86 -13.75 -0.23 -11.43 16 11 N -0.61 -9.54 3.30 -172.27 -0.57 -10.11 16 12 C 0.11 1.35 4.70 -3.34 -0.02 1.33 16 13 C -0.11 -1.69 4.16 -88.26 -0.37 -2.06 16 14 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 15 C 0.14 2.84 6.49 -3.39 -0.02 2.82 16 16 N -0.60 -15.01 3.38 -171.85 -0.58 -15.59 16 17 C -0.23 -6.32 10.25 -15.06 -0.15 -6.48 16 18 H 0.08 2.10 7.83 -52.48 -0.41 1.68 16 19 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 20 N -0.92 -26.81 10.25 55.49 0.57 -26.24 16 21 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.19 4.36 4.77 -3.58 -0.02 4.34 16 26 C -0.12 -2.13 4.01 -88.60 -0.36 -2.48 16 27 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 28 C 0.12 2.13 6.22 -3.60 -0.02 2.11 16 29 O -0.35 -4.87 9.91 -54.53 -0.54 -5.41 16 30 H 0.06 0.71 7.90 -51.93 -0.41 0.30 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.50 7.85 -51.93 -0.41 0.09 16 37 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 38 H 0.09 0.65 6.90 -51.93 -0.36 0.29 16 39 H 0.06 0.63 7.43 -51.93 -0.39 0.24 16 40 H 0.07 0.78 7.36 -51.93 -0.38 0.40 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.02 0.35 7.72 -51.93 -0.40 -0.05 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.05 1.31 6.74 -51.93 -0.35 0.96 16 45 H 0.05 1.27 7.37 -51.93 -0.38 0.88 16 46 H 0.08 1.61 7.29 -51.93 -0.38 1.23 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 362.26 15.07 5.46 5.46 Total: -1.00 -33.68 362.26 -10.36 -44.04 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -8.05 Total: -2.36 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.39 Total: 4.57 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.58 Total: -51.94 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.77 Total: -16.84 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.68 -10.36 -44.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048850743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.124 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds