Wall clock time and date at job start Fri Apr 10 2020 22:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99812 * 2 1 4 4 H 1.09003 * 110.67696 * 357.03013 * 3 2 1 5 5 O 1.44382 * 110.61820 * 234.06885 * 3 2 1 6 6 C 1.43740 * 106.97767 * 201.43587 * 5 3 2 7 7 C 1.54095 * 107.29415 * 26.51384 * 6 5 3 8 8 C 1.54816 * 104.18977 * 357.96807 * 7 6 5 9 9 H 1.09002 * 110.90760 * 97.34877 * 8 7 6 10 10 C 1.50693 * 110.90997 * 220.92250 * 8 7 6 11 11 O 1.21283 * 120.00135 * 118.54547 * 10 8 7 12 12 N 1.34775 * 119.99743 * 298.54590 * 10 8 7 13 13 C 1.46500 * 119.99796 * 179.97438 * 12 10 8 14 14 H 1.09001 * 110.32606 * 37.00952 * 13 12 10 15 15 C 1.50131 * 110.25139 * 159.01848 * 13 12 10 16 16 C 1.54844 * 110.81735 * 216.65919 * 15 13 12 17 17 C 1.54905 * 110.14181 * 321.13002 * 16 15 13 18 18 N 1.43436 * 116.07832 * 318.64656 * 17 16 15 19 19 C 1.36936 * 120.53139 * 271.59022 * 18 17 16 20 20 H 1.07997 * 119.99985 * 336.68038 * 19 18 17 21 21 C 1.38813 * 119.99747 * 156.68959 * 19 18 17 22 22 N 1.31618 * 120.00201 * 340.39960 * 21 19 18 23 23 Si 1.86802 * 119.99938 * 160.40380 * 21 19 18 24 24 H 1.48495 * 109.47199 * 89.99830 * 23 21 19 25 25 H 1.48497 * 109.47010 * 209.99573 * 23 21 19 26 26 H 1.48497 * 109.46857 * 329.99426 * 23 21 19 27 27 C 1.50168 * 118.93115 * 91.56168 * 18 17 16 28 28 C 1.46243 * 107.53478 * 289.59491 * 27 18 17 29 29 H 1.08001 * 120.00457 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.99958 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.00119 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.87871 * 267.08890 * 6 5 3 33 33 H 1.09000 * 109.87802 * 145.93532 * 6 5 3 34 34 H 1.08995 * 110.48858 * 239.29438 * 7 6 5 35 35 H 1.09005 * 110.60256 * 116.70066 * 7 6 5 36 36 H 0.97000 * 120.00163 * 359.97438 * 12 10 8 37 37 H 1.08999 * 109.20286 * 336.99972 * 15 13 12 38 38 H 1.08998 * 109.20634 * 96.35875 * 15 13 12 39 39 H 1.09000 * 109.36181 * 81.33678 * 16 15 13 40 40 H 1.08996 * 109.35518 * 201.06140 * 16 15 13 41 41 H 1.08998 * 108.15897 * 80.35817 * 17 16 15 42 42 H 1.08999 * 108.16069 * 197.13273 * 17 16 15 43 43 H 0.97001 * 120.00331 * 180.02562 * 22 21 19 44 44 H 1.09001 * 109.84730 * 170.07866 * 27 18 17 45 45 H 1.09004 * 109.84208 * 49.09791 * 27 18 17 46 46 H 1.08999 * 108.51997 * 179.64988 * 28 27 18 47 47 H 1.09002 * 108.51501 * 297.31959 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3738 2.1476 -0.0528 5 8 3.0044 1.3489 -1.0942 6 6 4.0001 2.3278 -0.7526 7 6 4.0580 2.4047 0.7853 8 6 2.9645 1.4153 1.2563 9 1 3.3983 0.4481 1.5104 10 6 2.1947 1.9796 2.4224 11 8 1.0023 2.1779 2.3230 12 7 2.8313 2.2640 3.5758 13 6 2.0830 2.8132 4.7093 14 1 1.0919 2.3628 4.7626 15 6 2.8309 2.5765 5.9893 16 6 1.8528 2.2651 7.1486 17 6 0.5883 3.1523 7.0325 18 7 0.8098 4.5208 6.6643 19 6 1.0486 5.4691 7.6228 20 1 0.7136 5.3083 8.6369 21 6 1.7210 6.6373 7.2910 22 7 2.4571 6.6860 6.2010 23 14 1.5813 8.1402 8.3916 24 1 2.6567 8.1060 9.4150 25 1 1.7187 9.3697 7.5702 26 1 0.2575 8.1397 9.0643 27 6 0.7763 4.8965 5.2108 28 6 1.9679 4.3287 4.5813 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.7212 3.2986 -1.1620 33 1 4.9700 2.0224 -1.1452 34 1 3.8306 3.4149 1.1256 35 1 5.0372 2.0923 1.1484 36 1 3.7849 2.1051 3.6554 37 1 3.5102 1.7343 5.8572 38 1 3.4080 3.4672 6.2374 39 1 1.5629 1.2153 7.1047 40 1 2.3454 2.4643 8.1003 41 1 -0.0742 2.7042 6.2919 42 1 0.0758 3.1409 7.9945 43 1 2.9273 7.5022 5.9693 44 1 0.7853 5.9817 5.1088 45 1 -0.1196 4.4875 4.7435 46 1 1.9566 4.5870 3.5224 47 1 2.8489 4.7804 5.0374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052721168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:16 Heat of formation + Delta-G solvation = -33.570991 kcal Electronic energy + Delta-G solvation = -26926.914264 eV Core-core repulsion = 23304.027548 eV Total energy + Delta-G solvation = -3622.886717 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.48189 -38.89865 -37.44308 -34.63213 -33.87058 -32.85319 -32.16537 -30.82893 -30.34509 -28.62228 -26.15685 -24.41968 -23.10851 -23.07147 -22.30126 -20.22182 -20.03947 -19.90633 -19.12743 -17.29055 -16.67972 -16.40873 -15.87237 -15.80250 -15.01741 -14.88194 -14.44177 -13.94166 -13.82373 -13.74620 -13.67101 -13.52395 -13.15013 -12.98314 -12.46741 -12.16591 -11.86590 -11.79463 -11.62282 -11.40954 -11.23119 -11.18014 -11.00377 -10.78009 -10.74470 -10.36067 -10.19296 -10.00650 -9.90071 -9.80779 -9.57981 -9.53876 -9.35837 -9.25778 -8.65516 -8.32574 -6.71278 -5.79389 -3.17885 2.12093 2.82931 3.36260 3.37155 3.44968 3.48009 3.88660 4.35008 4.45658 4.51082 4.66540 4.90087 5.00076 5.12350 5.17239 5.26253 5.33763 5.40777 5.53042 5.60823 5.61074 5.67146 5.69000 5.76147 5.79763 5.87889 6.11971 6.26117 6.30738 6.47467 6.50786 6.54044 6.60628 6.65820 6.78877 6.85250 6.89137 6.92272 7.07237 7.12073 7.27417 7.59058 7.73857 7.82039 7.95731 8.42850 8.49145 9.19207 9.87328 10.40853 11.27891 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.003565 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.533178 B = 7853.009104 C = 8339.197430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.157 4.157 3 C 0.127 3.873 4 H 0.088 0.912 5 O -0.372 6.372 6 C 0.049 3.951 7 C -0.149 4.149 8 C -0.138 4.138 9 H 0.109 0.891 10 C 0.521 3.479 11 O -0.533 6.533 12 N -0.717 5.717 13 C 0.146 3.854 14 H 0.083 0.917 15 C -0.112 4.112 16 C -0.140 4.140 17 C 0.154 3.846 18 N -0.588 5.588 19 C -0.247 4.247 20 H 0.067 0.933 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.899 3.101 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.169 3.831 28 C -0.130 4.130 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.393 0.607 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.029 0.971 42 H 0.033 0.967 43 H 0.251 0.749 44 H 0.090 0.910 45 H 0.009 0.991 46 H 0.028 0.972 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.144 -11.712 -10.743 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.069 3.931 4 H 0.105 0.895 5 O -0.291 6.291 6 C -0.028 4.028 7 C -0.187 4.187 8 C -0.160 4.160 9 H 0.127 0.873 10 C 0.306 3.694 11 O -0.410 6.410 12 N -0.367 5.367 13 C 0.043 3.957 14 H 0.101 0.899 15 C -0.150 4.150 16 C -0.181 4.181 17 C 0.025 3.975 18 N -0.310 5.310 19 C -0.376 4.376 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.729 3.271 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.045 3.955 28 C -0.170 4.170 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.227 0.773 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.027 0.973 46 H 0.046 0.954 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.332 -11.506 -11.048 16.295 hybrid contribution 0.841 0.822 0.882 1.469 sum 4.172 -10.684 -10.166 15.327 Atomic orbital electron populations 1.23908 0.95744 1.02314 0.97171 1.22523 0.95727 0.96713 1.02509 1.21985 0.90461 0.97182 0.83432 0.89471 1.88906 1.38571 1.60322 1.41315 1.23127 0.92772 0.92934 0.93994 1.22969 0.99005 1.00434 0.96253 1.22894 0.96986 1.00955 0.95180 0.87289 1.20025 0.87820 0.78103 0.83446 1.90707 1.14910 1.52938 1.82438 1.46284 1.12064 1.64870 1.13477 1.20504 0.95435 0.96088 0.83677 0.89916 1.21694 0.98078 1.01203 0.94047 1.22832 0.99475 0.98399 0.97435 1.20440 0.93422 0.85871 0.97784 1.44266 1.82377 1.01594 1.02715 1.19210 1.29639 0.97051 0.91726 0.91553 1.24870 0.97141 0.99666 0.97908 1.69961 1.31244 1.26695 1.26770 0.86356 0.77841 0.83090 0.79841 1.21649 1.21685 1.20655 1.20091 0.92429 1.00951 0.82028 1.21315 1.04801 0.92073 0.98795 0.87903 0.88056 0.87035 0.91995 0.89551 0.89673 0.89529 0.77342 0.94175 0.90103 0.93716 0.92654 0.95279 0.94867 0.93844 0.89153 0.97293 0.95351 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 14.33 29.01 0.42 -1.35 16 2 C -0.16 -1.86 9.24 -36.03 -0.33 -2.19 16 3 C 0.13 1.61 2.73 -26.83 -0.07 1.54 16 4 H 0.09 1.26 7.25 -51.93 -0.38 0.88 16 5 O -0.37 -4.64 11.21 -35.23 -0.39 -5.04 16 6 C 0.05 0.47 7.70 37.73 0.29 0.76 16 7 C -0.15 -1.44 6.55 -25.20 -0.16 -1.61 16 8 C -0.14 -1.61 2.94 -89.76 -0.26 -1.87 16 9 H 0.11 1.08 8.05 -51.93 -0.42 0.67 16 10 C 0.52 7.91 6.90 -10.99 -0.08 7.83 16 11 O -0.53 -10.09 15.52 5.55 0.09 -10.00 16 12 N -0.72 -10.58 4.96 -55.45 -0.27 -10.86 16 13 C 0.15 2.66 2.17 -69.60 -0.15 2.51 16 14 H 0.08 1.68 5.83 -51.93 -0.30 1.37 16 15 C -0.11 -1.99 5.30 -27.19 -0.14 -2.14 16 16 C -0.14 -2.55 6.41 -24.75 -0.16 -2.71 16 17 C 0.15 3.22 5.17 -4.66 -0.02 3.20 16 18 N -0.59 -14.31 2.60 -175.07 -0.46 -14.76 16 19 C -0.25 -6.55 9.62 -15.06 -0.14 -6.70 16 20 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 21 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 22 N -0.90 -24.38 9.43 55.49 0.52 -23.86 16 23 Si 0.90 21.24 29.60 -169.99 -5.03 16.21 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.17 4.03 5.24 -5.20 -0.03 4.00 16 28 C -0.13 -2.79 4.73 -30.19 -0.14 -2.93 16 29 H 0.10 1.26 7.87 -52.49 -0.41 0.84 16 30 H 0.10 0.94 8.06 -52.48 -0.42 0.52 16 31 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.92 7.85 -51.93 -0.41 0.52 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.39 4.70 8.45 -40.82 -0.34 4.35 16 37 H 0.04 0.60 7.81 -51.93 -0.41 0.20 16 38 H 0.08 1.69 6.82 -51.93 -0.35 1.33 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.03 0.59 6.89 -51.93 -0.36 0.23 16 42 H 0.03 0.69 7.98 -51.93 -0.41 0.27 16 43 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 44 H 0.09 2.40 6.05 -51.93 -0.31 2.08 16 45 H 0.01 0.21 8.12 -51.93 -0.42 -0.21 16 46 H 0.03 0.61 7.90 -51.93 -0.41 0.20 16 47 H 0.10 2.43 5.28 -51.93 -0.27 2.15 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -29.53 363.76 -8.87 -38.40 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.72 Total: 6.13 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -1.08 Total: -1.69 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.21 Total: -49.48 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.31 Total: -15.04 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.53 -8.87 -38.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052721168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.829 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds