Wall clock time and date at job start Fri Apr 10 2020 22:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47026 * 2 1 4 4 H 1.08994 * 110.33122 * 304.19774 * 3 2 1 5 5 C 1.54479 * 110.46141 * 181.88804 * 3 2 1 6 6 C 1.54507 * 104.06314 * 217.14007 * 5 3 2 7 7 C 1.54476 * 104.06400 * 0.02562 * 6 5 3 8 8 H 1.08997 * 110.46782 * 265.10251 * 7 6 5 9 9 C 1.50700 * 110.37448 * 142.80925 * 7 6 5 10 10 O 1.21280 * 119.99828 * 248.16484 * 9 7 6 11 11 N 1.34773 * 119.99972 * 68.16919 * 9 7 6 12 12 C 1.47856 * 134.36228 * 179.97438 * 11 9 7 13 13 C 1.52567 * 85.65808 * 156.34680 * 12 11 9 14 14 C 1.47856 * 134.36330 * 359.96726 * 11 9 7 15 15 C 1.53862 * 115.92879 * 140.70893 * 13 12 11 16 16 C 1.55159 * 101.40495 * 163.65280 * 15 13 12 17 17 N 1.47546 * 105.10149 * 324.29750 * 16 15 13 18 18 C 1.36931 * 125.66183 * 203.97377 * 17 16 15 19 19 H 1.08003 * 119.99797 * 180.02562 * 18 17 16 20 20 C 1.38810 * 119.99953 * 0.02562 * 18 17 16 21 21 N 1.31619 * 120.00124 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99902 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46968 * 90.00135 * 22 20 18 24 24 H 1.48501 * 109.47376 * 209.99820 * 22 20 18 25 25 H 1.48499 * 109.47103 * 330.00223 * 22 20 18 26 26 C 1.47618 * 108.53880 * 23.94786 * 17 16 15 27 27 O 1.44427 * 104.80432 * 23.97816 * 7 6 5 28 28 H 1.09005 * 109.47305 * 300.00704 * 1 2 3 29 29 H 1.09001 * 109.47136 * 59.99795 * 1 2 3 30 30 H 1.08994 * 109.47444 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46958 * 239.99555 * 2 1 3 32 32 H 1.09004 * 109.46603 * 119.99695 * 2 1 3 33 33 H 1.08998 * 110.51484 * 335.78314 * 5 3 2 34 34 H 1.09009 * 110.51311 * 98.36246 * 5 3 2 35 35 H 1.09003 * 110.51360 * 241.35898 * 6 5 3 36 36 H 1.08999 * 110.51480 * 118.64918 * 6 5 3 37 37 H 1.09004 * 113.83920 * 42.16772 * 12 11 9 38 38 H 1.08995 * 113.95424 * 270.54455 * 12 11 9 39 39 H 1.08997 * 113.83988 * 89.47015 * 14 11 9 40 40 H 1.08998 * 113.83835 * 317.83813 * 14 11 9 41 41 H 1.08994 * 111.04129 * 45.62558 * 15 13 12 42 42 H 1.09001 * 111.03563 * 281.67932 * 15 13 12 43 43 H 1.09002 * 110.33498 * 83.23348 * 16 15 13 44 44 H 1.08996 * 110.33170 * 205.36488 * 16 15 13 45 45 H 0.97003 * 120.00032 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.95897 * 238.58638 * 26 17 16 47 47 H 1.09007 * 109.97321 * 117.31239 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6246 1.9910 -0.8453 5 6 3.5838 1.4695 -0.0477 6 6 3.9667 2.6606 0.8589 7 6 2.6089 3.2119 1.3476 8 1 2.2793 4.0326 0.7106 9 6 2.7134 3.6700 2.7795 10 8 2.1264 3.0675 3.6532 11 7 3.4591 4.7491 3.0891 12 6 3.7776 5.4595 4.3461 13 6 5.0244 5.9506 3.6168 14 6 4.2846 5.6942 2.3071 15 6 5.4298 7.4103 3.8852 16 6 6.8925 7.4228 3.3678 17 7 7.4335 6.0941 3.7127 18 6 8.7580 5.7910 3.8829 19 1 9.0532 4.7832 4.1352 20 6 9.7211 6.7791 3.7311 21 7 9.3612 8.0073 3.4241 22 14 11.5279 6.3658 3.9640 23 1 12.1110 5.9455 2.6645 24 1 12.2489 7.5631 4.4659 25 1 11.6601 5.2602 4.9466 26 6 6.3076 5.1484 3.8435 27 8 1.6979 2.0963 1.2419 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9945 0.5407 0.3483 34 1 3.9316 1.6357 -1.0673 35 1 4.5036 3.4181 0.2879 36 1 4.5666 2.3207 1.7031 37 1 3.9903 4.7967 5.1850 38 1 3.0731 6.2523 4.5972 39 1 3.7332 6.5581 1.9362 40 1 4.8960 5.2161 1.5418 41 1 5.3897 7.6380 4.9504 42 1 4.8074 8.1003 3.3155 43 1 6.9111 7.5707 2.2881 44 1 7.4640 8.2054 3.8666 45 1 10.0342 8.6978 3.3184 46 1 6.3024 4.7119 4.8423 47 1 6.3927 4.3620 3.0935 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072793733.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:36 Heat of formation + Delta-G solvation = -20.607352 kcal Electronic energy + Delta-G solvation = -26338.653746 eV Core-core repulsion = 22716.329175 eV Total energy + Delta-G solvation = -3622.324571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.78309 -39.70779 -37.82199 -35.59914 -33.82958 -32.51972 -32.09199 -30.03633 -29.04908 -27.87380 -26.21886 -25.85977 -24.43053 -23.28395 -21.97035 -21.20386 -20.38708 -19.31634 -18.30299 -17.23498 -16.75003 -16.62754 -16.44147 -15.77620 -15.07220 -14.88490 -14.54614 -14.18572 -13.91152 -13.77487 -13.70282 -13.55865 -13.28879 -12.95088 -12.67189 -12.17215 -12.09934 -11.95987 -11.84767 -11.67922 -11.56981 -11.32877 -11.16285 -11.00520 -10.97789 -10.85596 -10.82707 -10.46600 -10.13580 -10.12275 -9.94882 -9.93453 -9.69611 -9.32870 -8.69653 -8.57047 -6.89221 -5.70018 -3.11601 2.58242 2.72518 3.37118 3.42721 3.44369 3.72006 4.21809 4.33767 4.43937 4.58785 4.63434 4.67651 4.85684 4.91016 4.97459 5.01577 5.06303 5.16545 5.30232 5.40240 5.44535 5.46588 5.52909 5.58121 5.61128 5.64751 5.70613 5.74014 5.77164 5.80327 5.83711 5.85252 5.95651 6.10253 6.12040 6.24592 6.46995 6.52155 6.62308 6.66335 6.70407 7.44030 7.57639 7.76707 7.80312 8.23401 8.30724 9.17254 9.77378 10.42209 11.33881 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.021157 B = 0.003146 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.149794 B = 8897.036605 C = 9703.769409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.070 3.930 4 H 0.070 0.930 5 C -0.149 4.149 6 C -0.143 4.143 7 C 0.065 3.935 8 H 0.091 0.909 9 C 0.540 3.460 10 O -0.529 6.529 11 N -0.639 5.639 12 C 0.125 3.875 13 C -0.101 4.101 14 C 0.115 3.885 15 C -0.132 4.132 16 C 0.153 3.847 17 N -0.604 5.604 18 C -0.221 4.221 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.163 3.837 27 O -0.341 6.341 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.013 0.987 44 H 0.107 0.893 45 H 0.252 0.748 46 H 0.030 0.970 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.341 -7.820 -8.389 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.013 3.987 4 H 0.088 0.912 5 C -0.187 4.187 6 C -0.181 4.181 7 C 0.004 3.996 8 H 0.108 0.892 9 C 0.328 3.672 10 O -0.405 6.405 11 N -0.376 5.376 12 C 0.003 3.997 13 C -0.103 4.103 14 C -0.007 4.007 15 C -0.171 4.171 16 C 0.028 3.972 17 N -0.331 5.331 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.037 3.963 27 O -0.259 6.259 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.031 0.969 44 H 0.124 0.876 45 H 0.063 0.937 46 H 0.048 0.952 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -14.744 -8.318 -7.820 18.647 hybrid contribution 1.063 -0.069 -0.210 1.086 sum -13.680 -8.387 -8.030 17.944 Atomic orbital electron populations 1.21730 0.95215 1.01550 1.02368 1.21578 0.96851 0.94176 1.02789 1.23135 0.93840 0.94389 0.87379 0.91170 1.22997 0.95775 0.99304 1.00591 1.22882 0.96294 0.98362 1.00535 1.22721 0.91000 0.91600 0.94327 0.89188 1.19806 0.77688 0.79782 0.89915 1.90707 1.44908 1.55244 1.49662 1.50133 1.48495 1.26855 1.12132 1.23087 0.94017 0.94020 0.88607 1.22427 0.94423 0.98909 0.94513 1.23234 0.90308 0.90986 0.96175 1.22851 1.00535 0.92386 1.01327 1.21971 0.87996 0.90166 0.97041 1.44663 1.01065 1.04994 1.82350 1.19060 0.80632 0.95112 1.40162 0.90528 1.24770 0.98157 0.95679 1.01990 1.69786 1.31504 1.00964 1.54861 0.86080 0.84628 0.77089 0.77747 1.21646 1.21628 1.20693 1.20847 0.85338 0.91983 0.98106 1.89267 1.55006 1.41690 1.39957 0.91812 0.92933 0.92762 0.90636 0.90919 0.90212 0.90101 0.89423 0.89931 0.89982 0.89607 0.89453 0.89711 0.91356 0.91847 0.96913 0.87554 0.93709 0.95249 0.95856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.83 37.16 0.37 -0.94 16 2 C -0.12 -1.03 5.58 -26.73 -0.15 -1.17 16 3 C 0.07 0.70 3.27 -25.96 -0.08 0.62 16 4 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 5 C -0.15 -1.38 6.63 -25.16 -0.17 -1.54 16 6 C -0.14 -1.58 6.22 -25.17 -0.16 -1.74 16 7 C 0.06 0.83 3.46 -27.11 -0.09 0.74 16 8 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 9 C 0.54 8.69 7.29 -10.99 -0.08 8.61 16 10 O -0.53 -10.69 17.28 -13.63 -0.24 -10.93 16 11 N -0.64 -9.31 3.62 -185.64 -0.67 -9.98 16 12 C 0.12 1.79 8.17 -3.52 -0.03 1.76 16 13 C -0.10 -1.59 0.97 -154.70 -0.15 -1.75 16 14 C 0.12 1.52 7.76 -3.51 -0.03 1.49 16 15 C -0.13 -2.20 6.45 -25.14 -0.16 -2.37 16 16 C 0.15 3.43 5.90 -2.33 -0.01 3.42 16 17 N -0.60 -14.70 3.42 -170.14 -0.58 -15.28 16 18 C -0.22 -5.98 10.29 -15.06 -0.15 -6.13 16 19 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -25.96 10.09 55.49 0.56 -25.40 16 22 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.16 3.23 6.76 -3.42 -0.02 3.21 16 27 O -0.34 -4.79 10.26 -54.42 -0.56 -5.35 16 28 H 0.06 0.67 7.91 -51.93 -0.41 0.26 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.73 7.88 -51.93 -0.41 0.32 16 34 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.09 0.85 7.56 -51.93 -0.39 0.45 16 36 H 0.08 1.06 7.86 -51.93 -0.41 0.65 16 37 H 0.08 1.24 8.02 -51.93 -0.42 0.82 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 0.97 8.02 -51.93 -0.42 0.55 16 40 H 0.08 1.10 7.13 -51.93 -0.37 0.73 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.90 7.97 -51.93 -0.41 0.48 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.11 2.74 5.88 -51.93 -0.31 2.44 16 45 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.03 0.60 8.00 -51.93 -0.42 0.19 16 47 H 0.02 0.47 7.88 -51.93 -0.41 0.06 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -32.32 371.27 -10.08 -42.40 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.14 Total: -1.43 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.02 Total: 3.82 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.69 Total: -50.66 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.79 Total: -16.28 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.32 -10.08 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072793733.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.791 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds