Wall clock time and date at job start Fri Apr 10 2020 22:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46990 * 2 1 4 4 H 1.09007 * 110.43716 * 53.26122 * 3 2 1 5 5 C 1.54810 * 110.60172 * 290.63667 * 3 2 1 6 6 C 1.54996 * 102.08951 * 220.38950 * 5 3 2 7 7 O 1.44374 * 103.49471 * 37.02595 * 6 5 3 8 8 C 1.43751 * 106.97276 * 319.93833 * 7 6 5 9 9 H 1.09001 * 109.99943 * 267.01787 * 8 7 6 10 10 C 1.50695 * 109.87727 * 145.93612 * 8 7 6 11 11 O 1.21281 * 120.00377 * 351.11960 * 10 8 7 12 12 N 1.34780 * 119.99782 * 171.11340 * 10 8 7 13 13 C 1.47289 * 136.54392 * 174.72192 * 12 10 8 14 14 C 1.54079 * 87.60556 * 151.64778 * 13 12 10 15 15 H 1.09000 * 115.90150 * 141.69508 * 14 13 12 16 16 C 1.53062 * 111.39478 * 273.98090 * 14 13 12 17 17 C 1.53140 * 109.21660 * 142.39677 * 16 14 13 18 18 N 1.46543 * 108.25433 * 301.59034 * 17 16 14 19 19 C 1.36934 * 119.74181 * 236.44385 * 18 17 16 20 20 H 1.07994 * 120.00091 * 33.47962 * 19 18 17 21 21 C 1.38807 * 119.99912 * 213.48015 * 19 18 17 22 22 N 1.31620 * 120.00142 * 6.06447 * 21 19 18 23 23 Si 1.86800 * 120.00069 * 186.06918 * 21 19 18 24 24 H 1.48510 * 109.46950 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47394 * 119.99811 * 23 21 19 26 26 H 1.48497 * 109.47351 * 239.99809 * 23 21 19 27 27 C 1.45707 * 120.51943 * 56.41919 * 18 17 16 28 28 C 1.46462 * 136.54577 * 355.10954 * 12 10 8 29 29 H 1.09004 * 111.44001 * 96.83012 * 28 12 10 30 30 H 1.08997 * 109.47114 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47006 * 300.00234 * 1 2 3 32 32 H 1.09003 * 109.47042 * 59.99924 * 1 2 3 33 33 H 1.08991 * 109.46878 * 240.00125 * 2 1 3 34 34 H 1.09003 * 109.47042 * 120.00076 * 2 1 3 35 35 H 1.08999 * 110.90707 * 338.58827 * 5 3 2 36 36 H 1.08994 * 110.90407 * 102.15813 * 5 3 2 37 37 H 1.09006 * 110.61339 * 155.52754 * 6 5 3 38 38 H 1.09001 * 110.61963 * 278.35953 * 6 5 3 39 39 H 1.08999 * 113.53448 * 266.33410 * 13 12 10 40 40 H 1.09004 * 113.52665 * 36.97136 * 13 12 10 41 41 H 1.09006 * 109.51512 * 22.47438 * 16 14 13 42 42 H 1.09001 * 109.56033 * 262.34556 * 16 14 13 43 43 H 1.09004 * 109.71189 * 181.90645 * 17 16 14 44 44 H 1.08996 * 109.71174 * 61.28211 * 17 16 14 45 45 H 0.97005 * 120.00016 * 180.02562 * 22 21 19 46 46 H 1.08993 * 108.79025 * 199.11090 * 27 18 17 47 47 H 1.09001 * 108.69794 * 80.83487 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5908 2.0050 0.8186 5 6 1.7401 2.1263 -1.3561 6 6 3.0388 2.9344 -1.6065 7 8 4.0775 2.0673 -1.1029 8 6 3.5771 1.4711 0.1056 9 1 3.8784 2.0665 0.9675 10 6 4.1076 0.0672 0.2422 11 8 4.7086 -0.4461 -0.6777 12 7 3.9141 -0.6179 1.3866 13 6 4.1741 -1.9841 1.8718 14 6 4.2868 -1.3899 3.2890 15 1 3.8637 -1.9922 4.0929 16 6 5.7045 -0.8876 3.5727 17 6 5.6273 0.3995 4.3989 18 7 4.8496 1.3846 3.6424 19 6 5.4003 2.6030 3.3469 20 1 6.4602 2.6848 3.1568 21 6 4.5961 3.7331 3.2918 22 7 3.3289 3.6567 3.6392 23 14 5.3123 5.3623 2.7243 24 1 6.7489 5.1830 2.3931 25 1 4.5812 5.8319 1.5201 26 1 5.1766 6.3674 3.8090 27 6 3.4952 1.0776 3.2016 28 6 3.3443 -0.3424 2.7074 29 1 2.3082 -0.6748 2.7716 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 1.5861 1.3848 -2.1400 36 1 0.8785 2.7890 -1.2754 37 1 3.1762 3.1195 -2.6719 38 1 3.0187 3.8741 -1.0544 39 1 3.3266 -2.6583 1.7488 40 1 5.1082 -2.4069 1.5018 41 1 6.2146 -0.6856 2.6308 42 1 6.2555 -1.6453 4.1299 43 1 6.6321 0.7829 4.5770 44 1 5.1368 0.1965 5.3508 45 1 2.7669 4.4463 3.6003 46 1 3.2249 1.7603 2.3961 47 1 2.8123 1.2331 4.0368 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084420769.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:57 Heat of formation + Delta-G solvation = -9.639655 kcal Electronic energy + Delta-G solvation = -28881.234007 eV Core-core repulsion = 25259.385031 eV Total energy + Delta-G solvation = -3621.848976 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97884 -39.29385 -37.15311 -35.26936 -34.50983 -32.31544 -30.72787 -30.05915 -29.27965 -28.51208 -26.82969 -24.14708 -23.56408 -22.80411 -22.34793 -21.33004 -20.57239 -19.44270 -17.74143 -17.00114 -16.43181 -16.09223 -15.90929 -15.69270 -14.68056 -14.35945 -14.31307 -14.13423 -13.84146 -13.62158 -13.30308 -13.18004 -12.97622 -12.78605 -12.53901 -12.33320 -12.01283 -11.87916 -11.58867 -11.43384 -11.08044 -10.97917 -10.90212 -10.85293 -10.61062 -10.55039 -10.47119 -10.35793 -10.25310 -9.95071 -9.88438 -9.73120 -9.26813 -8.87717 -8.58141 -8.13143 -6.65366 -5.87422 -3.38005 3.13604 3.18880 3.32146 3.40639 3.44688 4.30496 4.42213 4.61502 4.69267 4.82749 4.92181 5.15746 5.23957 5.30583 5.34440 5.38145 5.45539 5.46107 5.49696 5.65777 5.69417 5.71489 5.76685 5.86230 5.94571 5.97051 5.99195 6.04389 6.09690 6.12482 6.19911 6.23133 6.25558 6.35015 6.37690 6.43770 6.48533 6.56429 6.77168 6.97065 7.16907 7.20905 7.47503 7.75380 8.26431 8.40905 8.73291 9.17371 9.76204 10.30639 11.19286 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.010787 B = 0.008743 C = 0.006058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.054842 B = 3201.915358 C = 4621.048025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C -0.108 4.108 4 H 0.097 0.903 5 C -0.147 4.147 6 C 0.044 3.956 7 O -0.352 6.352 8 C 0.058 3.942 9 H 0.126 0.874 10 C 0.565 3.435 11 O -0.545 6.545 12 N -0.631 5.631 13 C 0.102 3.898 14 C -0.112 4.112 15 H 0.093 0.907 16 C -0.118 4.118 17 C 0.149 3.851 18 N -0.587 5.587 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.010 3.990 22 N -0.906 5.906 23 Si 0.896 3.104 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.288 1.288 27 C 0.164 3.836 28 C 0.107 3.893 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.022 0.978 45 H 0.254 0.746 46 H 0.087 0.913 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.201 -7.559 -3.078 10.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.127 4.127 4 H 0.116 0.884 5 C -0.184 4.184 6 C -0.032 4.032 7 O -0.270 6.270 8 C -0.002 4.002 9 H 0.143 0.857 10 C 0.355 3.645 11 O -0.422 6.422 12 N -0.368 5.368 13 C -0.021 4.021 14 C -0.131 4.131 15 H 0.111 0.889 16 C -0.157 4.157 17 C 0.023 3.977 18 N -0.310 5.310 19 C -0.383 4.383 20 H 0.081 0.919 21 C -0.188 4.188 22 N -0.550 5.550 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.214 1.214 26 H -0.215 1.215 27 C 0.038 3.962 28 C 0.002 3.998 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.040 0.960 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.750 -7.582 -3.895 10.282 hybrid contribution -0.044 0.968 -0.226 0.995 sum -5.794 -6.615 -4.121 9.711 Atomic orbital electron populations 1.21741 0.95522 1.01250 1.01841 1.21952 0.96239 0.95585 1.03280 1.22499 0.93729 0.97617 0.98824 0.88439 1.23203 0.98589 0.99596 0.97059 1.23554 0.86346 0.93669 0.99671 1.88936 1.37943 1.60449 1.39645 1.23116 0.93256 0.92748 0.91087 0.85714 1.19742 0.78421 0.86725 0.79590 1.90637 1.41962 1.70642 1.38952 1.49521 1.61581 1.13364 1.12311 1.23217 1.00895 0.85691 0.92308 1.22727 0.97780 0.97211 0.95390 0.88902 1.21856 0.93596 0.98840 1.01443 1.20771 0.95965 0.88581 0.92400 1.43430 1.13099 1.13184 1.61258 1.19226 0.93541 0.83768 1.41739 0.91859 1.25199 0.96398 0.97581 0.99667 1.69982 1.05282 1.28621 1.51143 0.86300 0.79064 0.84100 0.77980 1.20065 1.21394 1.21500 1.20321 0.87572 0.89074 0.99273 1.22823 0.96388 1.00491 0.80070 0.90562 0.93023 0.92401 0.92948 0.92047 0.90032 0.90608 0.90178 0.89156 0.91901 0.90599 0.90926 0.91888 0.92533 0.92393 0.96015 0.93603 0.89488 0.94190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.79 37.16 0.36 -1.37 16 2 C -0.13 -1.97 4.15 -26.73 -0.11 -2.08 16 3 C -0.11 -1.77 2.76 -89.09 -0.25 -2.01 16 4 H 0.10 1.64 7.87 -51.93 -0.41 1.23 16 5 C -0.15 -2.08 6.00 -24.72 -0.15 -2.23 16 6 C 0.04 0.72 7.72 38.21 0.29 1.01 16 7 O -0.35 -7.46 10.75 -54.65 -0.59 -8.05 16 8 C 0.06 1.19 3.01 -27.31 -0.08 1.11 16 9 H 0.13 2.94 5.54 -51.93 -0.29 2.66 16 10 C 0.56 11.99 5.63 -10.99 -0.06 11.93 16 11 O -0.54 -13.27 17.34 -13.87 -0.24 -13.51 16 12 N -0.63 -11.48 2.06 -187.74 -0.39 -11.86 16 13 C 0.10 1.51 7.96 -11.56 -0.09 1.42 16 14 C -0.11 -1.66 4.57 -90.31 -0.41 -2.08 16 15 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.12 -1.96 5.69 -26.63 -0.15 -2.11 16 17 C 0.15 2.93 6.46 -3.95 -0.03 2.90 16 18 N -0.59 -13.65 3.00 -174.89 -0.53 -14.18 16 19 C -0.25 -6.61 9.32 -15.06 -0.14 -6.75 16 20 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 21 C 0.01 0.27 5.10 -17.43 -0.09 0.18 16 22 N -0.91 -24.04 11.03 55.49 0.61 -23.43 16 23 Si 0.90 21.21 29.56 -169.99 -5.02 16.18 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.16 3.49 4.36 -5.42 -0.02 3.47 16 28 C 0.11 1.82 3.08 -77.70 -0.24 1.58 16 29 H 0.08 1.13 7.24 -51.93 -0.38 0.76 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.57 7.60 -51.93 -0.39 0.18 16 33 H 0.06 0.99 7.69 -51.93 -0.40 0.60 16 34 H 0.08 1.25 4.02 -51.93 -0.21 1.04 16 35 H 0.08 1.03 7.79 -51.93 -0.40 0.63 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 41 H 0.06 1.21 7.68 -51.93 -0.40 0.81 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.14 7.90 -51.93 -0.41 0.73 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 46 H 0.09 2.00 2.95 -51.93 -0.15 1.85 16 47 H 0.04 0.93 7.91 -51.93 -0.41 0.52 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -30.86 352.31 -9.63 -40.49 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.62 Total: 4.08 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -1.16 Total: 4.97 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: -0.30 Total: -49.47 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.83 Total: -21.56 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.86 -9.63 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084420769.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.847 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds