Wall clock time and date at job start Fri Apr 10 2020 22:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46990 * 2 1 4 4 H 1.09007 * 110.43716 * 53.26122 * 3 2 1 5 5 C 1.54810 * 110.60172 * 290.63667 * 3 2 1 6 6 C 1.54996 * 102.08951 * 220.38950 * 5 3 2 7 7 O 1.44374 * 103.49471 * 37.02595 * 6 5 3 8 8 C 1.43751 * 106.97276 * 319.93833 * 7 6 5 9 9 H 1.09001 * 109.99943 * 267.01787 * 8 7 6 10 10 C 1.50695 * 109.87727 * 145.93612 * 8 7 6 11 11 O 1.21281 * 120.00377 * 351.11960 * 10 8 7 12 12 N 1.34780 * 119.99782 * 171.11340 * 10 8 7 13 13 C 1.47289 * 136.54392 * 174.72192 * 12 10 8 14 14 C 1.54079 * 87.60556 * 151.64778 * 13 12 10 15 15 H 1.09000 * 115.90150 * 141.69508 * 14 13 12 16 16 C 1.53062 * 111.39478 * 273.98090 * 14 13 12 17 17 C 1.53140 * 109.21660 * 142.39677 * 16 14 13 18 18 N 1.46543 * 108.25433 * 301.59034 * 17 16 14 19 19 C 1.36934 * 119.74181 * 236.44385 * 18 17 16 20 20 H 1.07994 * 120.00091 * 33.47962 * 19 18 17 21 21 C 1.38807 * 119.99912 * 213.48015 * 19 18 17 22 22 N 1.31620 * 120.00142 * 6.06447 * 21 19 18 23 23 Si 1.86800 * 120.00069 * 186.06918 * 21 19 18 24 24 H 1.48510 * 109.46950 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47394 * 119.99811 * 23 21 19 26 26 H 1.48497 * 109.47351 * 239.99809 * 23 21 19 27 27 C 1.45707 * 120.51943 * 56.41919 * 18 17 16 28 28 C 1.46462 * 136.54577 * 355.10954 * 12 10 8 29 29 H 1.09004 * 111.44001 * 96.83012 * 28 12 10 30 30 H 1.08997 * 109.47114 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47006 * 300.00234 * 1 2 3 32 32 H 1.09003 * 109.47042 * 59.99924 * 1 2 3 33 33 H 1.08991 * 109.46878 * 240.00125 * 2 1 3 34 34 H 1.09003 * 109.47042 * 120.00076 * 2 1 3 35 35 H 1.08999 * 110.90707 * 338.58827 * 5 3 2 36 36 H 1.08994 * 110.90407 * 102.15813 * 5 3 2 37 37 H 1.09006 * 110.61339 * 155.52754 * 6 5 3 38 38 H 1.09001 * 110.61963 * 278.35953 * 6 5 3 39 39 H 1.08999 * 113.53448 * 266.33410 * 13 12 10 40 40 H 1.09004 * 113.52665 * 36.97136 * 13 12 10 41 41 H 1.09006 * 109.51512 * 22.47438 * 16 14 13 42 42 H 1.09001 * 109.56033 * 262.34556 * 16 14 13 43 43 H 1.09004 * 109.71189 * 181.90645 * 17 16 14 44 44 H 1.08996 * 109.71174 * 61.28211 * 17 16 14 45 45 H 0.97005 * 120.00016 * 180.02562 * 22 21 19 46 46 H 1.08993 * 108.79025 * 199.11090 * 27 18 17 47 47 H 1.09001 * 108.69794 * 80.83487 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5908 2.0050 0.8186 5 6 1.7401 2.1263 -1.3561 6 6 3.0388 2.9344 -1.6065 7 8 4.0775 2.0673 -1.1029 8 6 3.5771 1.4711 0.1056 9 1 3.8784 2.0665 0.9675 10 6 4.1076 0.0672 0.2422 11 8 4.7086 -0.4461 -0.6777 12 7 3.9141 -0.6179 1.3866 13 6 4.1741 -1.9841 1.8718 14 6 4.2868 -1.3899 3.2890 15 1 3.8637 -1.9922 4.0929 16 6 5.7045 -0.8876 3.5727 17 6 5.6273 0.3995 4.3989 18 7 4.8496 1.3846 3.6424 19 6 5.4003 2.6030 3.3469 20 1 6.4602 2.6848 3.1568 21 6 4.5961 3.7331 3.2918 22 7 3.3289 3.6567 3.6392 23 14 5.3123 5.3623 2.7243 24 1 6.7489 5.1830 2.3931 25 1 4.5812 5.8319 1.5201 26 1 5.1766 6.3674 3.8090 27 6 3.4952 1.0776 3.2016 28 6 3.3443 -0.3424 2.7074 29 1 2.3082 -0.6748 2.7716 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 1.5861 1.3848 -2.1400 36 1 0.8785 2.7890 -1.2754 37 1 3.1762 3.1195 -2.6719 38 1 3.0187 3.8741 -1.0544 39 1 3.3266 -2.6583 1.7488 40 1 5.1082 -2.4069 1.5018 41 1 6.2146 -0.6856 2.6308 42 1 6.2555 -1.6453 4.1299 43 1 6.6321 0.7829 4.5770 44 1 5.1368 0.1965 5.3508 45 1 2.7669 4.4463 3.6003 46 1 3.2249 1.7603 2.3961 47 1 2.8123 1.2331 4.0368 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084420769.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:56 Heat of formation + Delta-G solvation = -27.539319 kcal Electronic energy + Delta-G solvation = -28882.010194 eV Core-core repulsion = 25259.385031 eV Total energy + Delta-G solvation = -3622.625164 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.41113 -40.70057 -38.77063 -36.99539 -35.80842 -34.01640 -32.38092 -31.30582 -30.74876 -30.03752 -28.37752 -25.80442 -24.96512 -24.15894 -23.68336 -22.78611 -21.97844 -20.87254 -19.41451 -18.55864 -17.84262 -17.59788 -17.45460 -17.27572 -16.37727 -15.97272 -15.60083 -15.53315 -15.43830 -15.11124 -14.85157 -14.48506 -14.41249 -14.28872 -14.06405 -13.58673 -13.51867 -13.09729 -13.06428 -12.79959 -12.72654 -12.64899 -12.29394 -12.22676 -12.17098 -12.09607 -11.98277 -11.81290 -11.63446 -11.57557 -11.33359 -11.18837 -10.81131 -10.57636 -10.45212 -9.57521 -8.54194 -7.86890 -5.38808 1.38107 1.42620 1.50266 1.56768 1.76193 2.46465 2.92706 3.25403 3.32344 3.42108 3.46692 3.66922 3.73858 3.89635 3.95025 4.14337 4.20531 4.24532 4.33326 4.42771 4.47928 4.51811 4.53684 4.63326 4.66956 4.70206 4.72314 4.74483 4.82184 4.85521 4.90371 4.90979 5.08688 5.09045 5.09804 5.12580 5.22253 5.31361 5.38097 5.41152 5.58829 5.66838 5.75835 5.80973 6.42601 6.75927 7.16795 7.21359 7.91794 8.36089 9.15675 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.010787 B = 0.008743 C = 0.006058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.054842 B = 3201.915358 C = 4621.048025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C -0.103 4.103 4 H 0.089 0.911 5 C -0.135 4.135 6 C 0.033 3.967 7 O -0.389 6.389 8 C 0.057 3.943 9 H 0.087 0.913 10 C 0.560 3.440 11 O -0.588 6.588 12 N -0.633 5.633 13 C 0.104 3.896 14 C -0.099 4.099 15 H 0.139 0.861 16 C -0.109 4.109 17 C 0.143 3.857 18 N -0.604 5.604 19 C -0.263 4.263 20 H 0.045 0.955 21 C -0.023 4.023 22 N -0.918 5.918 23 Si 0.939 3.061 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.285 1.285 27 C 0.169 3.831 28 C 0.105 3.895 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.057 0.943 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.028 0.972 42 H 0.093 0.907 43 H 0.045 0.955 44 H 0.035 0.965 45 H 0.252 0.748 46 H 0.067 0.933 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.106 -9.482 -2.780 12.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C -0.122 4.122 4 H 0.108 0.892 5 C -0.172 4.172 6 C -0.043 4.043 7 O -0.307 6.307 8 C -0.004 4.004 9 H 0.104 0.896 10 C 0.350 3.650 11 O -0.469 6.469 12 N -0.368 5.368 13 C -0.017 4.017 14 C -0.118 4.118 15 H 0.157 0.843 16 C -0.148 4.148 17 C 0.018 3.982 18 N -0.327 5.327 19 C -0.394 4.394 20 H 0.063 0.937 21 C -0.221 4.221 22 N -0.563 5.563 23 Si 0.768 3.232 24 H -0.206 1.206 25 H -0.214 1.214 26 H -0.211 1.211 27 C 0.043 3.957 28 C 0.002 3.998 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.075 0.925 39 H 0.134 0.866 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.085 0.915 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -7.665 -9.533 -3.550 12.737 hybrid contribution 0.629 1.600 -0.259 1.739 sum -7.036 -7.933 -3.809 11.267 Atomic orbital electron populations 1.21698 0.92821 1.02584 1.02538 1.21867 0.98409 0.93824 1.02182 1.22489 0.90706 0.99152 0.99814 0.89219 1.23198 0.98408 0.99744 0.95880 1.23850 0.86495 0.93055 1.00857 1.88890 1.40535 1.61397 1.39924 1.23024 0.96001 0.91787 0.89565 0.89602 1.19865 0.78101 0.87032 0.79957 1.90592 1.44074 1.71646 1.40631 1.49626 1.60585 1.15034 1.11561 1.23485 1.02382 0.84450 0.91384 1.22782 0.95889 0.96304 0.96817 0.84311 1.21737 0.95335 0.98164 0.99585 1.20916 0.94972 0.89178 0.93137 1.43650 1.13963 1.13067 1.62062 1.19261 0.92952 0.85524 1.41630 0.93740 1.25603 0.96786 0.99417 1.00249 1.70067 1.05614 1.28796 1.51855 0.85640 0.78148 0.81841 0.77571 1.20608 1.21418 1.21113 1.20144 0.86025 0.91617 0.97869 1.22924 0.98967 0.98406 0.79526 0.87122 0.91385 0.92097 0.91874 0.93551 0.90638 0.89592 0.87283 0.86676 0.92497 0.86589 0.91474 0.95285 0.88812 0.93604 0.94722 0.93849 0.91472 0.96378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.79 71.98 0.70 -2.16 16 2 C -0.13 -3.50 4.15 30.60 0.13 -3.37 16 3 C -0.10 -3.33 2.76 -9.80 -0.03 -3.36 16 4 H 0.09 3.02 7.87 -2.38 -0.02 3.00 16 5 C -0.14 -3.65 6.00 31.90 0.19 -3.46 16 6 C 0.03 1.08 7.72 72.67 0.56 1.64 16 7 O -0.39 -17.13 10.75 -130.41 -1.40 -18.53 16 8 C 0.06 2.40 3.01 30.22 0.09 2.49 16 9 H 0.09 4.31 5.54 -2.39 -0.01 4.29 16 10 C 0.56 24.20 5.63 87.65 0.49 24.69 16 11 O -0.59 -29.44 17.34 15.54 0.27 -29.17 16 12 N -0.63 -22.43 2.06 -866.26 -1.78 -24.21 16 13 C 0.10 2.76 7.96 81.08 0.65 3.40 16 14 C -0.10 -2.59 4.57 -10.59 -0.05 -2.64 16 15 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 16 C -0.11 -3.42 5.69 30.66 0.17 -3.24 16 17 C 0.14 5.56 6.46 86.42 0.56 6.12 16 18 N -0.60 -28.62 3.00 -707.24 -2.12 -30.75 16 19 C -0.26 -14.28 9.32 84.03 0.78 -13.49 16 20 H 0.04 2.52 7.83 -2.91 -0.02 2.50 16 21 C -0.02 -1.26 5.10 84.86 0.43 -0.83 16 22 N -0.92 -49.87 11.03 21.65 0.24 -49.63 16 23 Si 0.94 44.80 29.56 68.60 2.03 46.83 16 24 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 27 C 0.17 7.26 4.36 85.91 0.37 7.63 16 28 C 0.11 3.39 3.08 38.68 0.12 3.51 16 29 H 0.11 2.88 7.24 -2.38 -0.02 2.86 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.17 7.60 -2.39 -0.02 1.15 16 33 H 0.05 1.44 7.69 -2.39 -0.02 1.42 16 34 H 0.08 2.16 4.02 -2.39 -0.01 2.15 16 35 H 0.09 2.16 7.79 -2.39 -0.02 2.14 16 36 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.12 3.05 8.14 -2.38 -0.02 3.03 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.07 1.89 8.05 -2.38 -0.02 1.88 16 41 H 0.03 1.10 7.68 -2.38 -0.02 1.08 16 42 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.05 1.84 7.90 -2.38 -0.02 1.82 16 44 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.25 13.30 8.31 -92.70 -0.77 12.53 16 46 H 0.07 3.18 2.95 -2.39 -0.01 3.17 16 47 H 0.02 0.85 7.91 -2.39 -0.02 0.84 16 Total: -1.00 -71.59 352.31 3.37 -68.23 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.96 Total: 20.30 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 5.18 Total: 16.94 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.67 Total: -104.59 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -1.13 Total: -47.71 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.59 3.37 -68.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084420769.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.686 kcal (2) G-P(sol) polarization free energy of solvation -71.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds