Wall clock time and date at job start Fri Apr 10 2020 22:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50698 * 120.00095 * 2 1 4 4 C 1.53000 * 109.47096 * 125.00242 * 3 2 1 5 5 O 1.42898 * 109.47182 * 180.02562 * 4 3 2 6 6 C 1.42902 * 114.00072 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47182 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99737 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00023 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00085 * 180.02562 * 9 7 6 11 11 C 1.54321 * 112.36114 * 299.33770 * 10 9 7 12 12 C 1.55055 * 103.94234 * 262.39332 * 11 10 9 13 13 C 1.55057 * 102.10719 * 319.94280 * 12 11 10 14 14 C 1.54325 * 103.93678 * 40.05503 * 13 12 11 15 15 H 1.08996 * 111.68893 * 97.20228 * 14 13 12 16 16 C 1.53777 * 109.06510 * 221.16783 * 14 13 12 17 17 N 1.49316 * 105.33484 * 95.07756 * 16 14 13 18 18 C 1.36942 * 126.54476 * 211.25902 * 17 16 14 19 19 H 1.07998 * 119.99937 * 162.18803 * 18 17 16 20 20 C 1.38810 * 119.99713 * 342.19875 * 18 17 16 21 21 N 1.31621 * 119.99630 * 159.96585 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 339.95767 * 20 18 17 23 23 H 1.48500 * 109.47267 * 84.71333 * 22 20 18 24 24 H 1.48507 * 109.47049 * 204.71363 * 22 20 18 25 25 H 1.48495 * 109.47473 * 324.71455 * 22 20 18 26 26 C 1.47218 * 106.75466 * 31.43278 * 17 16 14 27 27 H 1.08003 * 120.00172 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.00128 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99845 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46945 * 5.00225 * 3 2 1 31 31 H 1.08995 * 109.47434 * 244.99972 * 3 2 1 32 32 H 1.08996 * 109.47238 * 60.00162 * 4 3 2 33 33 H 1.09004 * 109.47290 * 300.00349 * 4 3 2 34 34 H 1.09004 * 109.46835 * 59.99705 * 6 5 4 35 35 H 1.08999 * 109.47172 * 300.00016 * 6 5 4 36 36 H 0.97008 * 119.99988 * 0.02562 * 9 7 6 37 37 H 1.09002 * 110.53293 * 143.77627 * 11 10 9 38 38 H 1.09002 * 110.53485 * 21.00981 * 11 10 9 39 39 H 1.08994 * 110.90527 * 201.73990 * 12 11 10 40 40 H 1.08999 * 110.90159 * 78.13786 * 12 11 10 41 41 H 1.08995 * 110.53413 * 158.66915 * 13 12 11 42 42 H 1.09002 * 110.53189 * 281.44589 * 13 12 11 43 43 H 1.08996 * 110.07426 * 214.12187 * 16 14 13 44 44 H 1.09003 * 110.07131 * 335.66126 * 16 14 13 45 45 H 0.97007 * 119.99371 * 179.97438 * 21 20 18 46 46 H 1.09000 * 110.06851 * 209.29996 * 26 17 16 47 47 H 1.08994 * 110.11961 * 87.78511 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 8 3.7491 2.5708 1.1820 6 6 4.6878 2.7000 2.2517 7 6 5.3799 4.0351 2.1542 8 8 5.0968 4.8008 1.2573 9 7 6.3127 4.3787 3.0643 10 6 6.9851 5.6768 2.9699 11 6 7.7643 5.8396 1.6478 12 6 9.2238 5.4795 2.0276 13 6 9.3715 6.1459 3.4198 14 6 8.0172 5.8735 4.1078 15 1 8.0663 5.0045 4.7639 16 6 7.5769 7.1358 4.8677 17 7 6.6703 7.8643 3.9312 18 6 6.5001 9.2208 3.8511 19 1 6.0531 9.6578 2.9704 20 6 6.9022 10.0339 4.9017 21 7 7.1136 11.3169 4.6973 22 14 7.1432 9.3075 6.6057 23 1 8.5076 8.7306 6.7094 24 1 6.9777 10.3736 7.6262 25 1 6.1361 8.2409 6.8361 26 6 5.9933 6.8429 3.1153 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4026 -0.9313 32 1 3.7399 0.5065 1.0920 33 1 2.4773 1.2354 2.1130 34 1 5.4273 1.9019 2.1845 35 1 4.1640 2.6306 3.2050 36 1 6.5389 3.7663 3.7819 37 1 7.7042 6.8684 1.2929 38 1 7.3846 5.1510 0.8930 39 1 9.9282 5.9079 1.3147 40 1 9.3521 4.3993 2.0980 41 1 10.1847 5.6847 3.9802 42 1 9.5381 7.2180 3.3148 43 1 7.0421 6.8583 5.7760 44 1 8.4459 7.7452 5.1160 45 1 7.3942 11.8852 5.4316 46 1 5.7480 7.2500 2.1344 47 1 5.0870 6.5031 3.6164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112014948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:13 Heat of formation + Delta-G solvation = -33.651625 kcal Electronic energy + Delta-G solvation = -26076.712080 eV Core-core repulsion = 22453.821867 eV Total energy + Delta-G solvation = -3622.890213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.40183 -38.80338 -37.59856 -35.26524 -34.49816 -33.55319 -31.69564 -30.39193 -29.70124 -28.58987 -26.96908 -25.16555 -24.05887 -23.28378 -21.45911 -20.75575 -20.24069 -19.73099 -19.02958 -17.39715 -17.00612 -16.69817 -16.42114 -15.83822 -15.46619 -15.07615 -14.81743 -14.43777 -14.20383 -13.86800 -13.65310 -13.61808 -13.34748 -13.18101 -12.93029 -12.64897 -12.02836 -11.80123 -11.61477 -11.48539 -11.42129 -11.28940 -11.11016 -10.91403 -10.76409 -10.69367 -10.41609 -10.37589 -10.09243 -9.94354 -9.87618 -9.74452 -9.49326 -9.39223 -8.91067 -8.63223 -7.04711 -5.89556 -3.20627 1.85541 2.73544 2.80165 3.32312 3.48021 3.49921 3.82328 4.55570 4.56725 4.61032 4.72234 4.75490 4.86872 4.87629 4.92854 5.02702 5.03508 5.06006 5.10126 5.13385 5.44595 5.48171 5.60882 5.61407 5.66533 5.71238 5.71431 5.83509 5.90944 5.95283 6.15901 6.18984 6.24046 6.32117 6.36899 6.44494 6.52736 6.58486 6.69262 6.71864 6.75097 6.83238 6.99981 7.64737 7.67755 8.34943 8.39583 8.84363 9.71000 10.21892 11.26792 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.003036 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.812912 B = 9219.278905 C = 9857.871803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.094 4.094 4 C 0.065 3.935 5 O -0.362 6.362 6 C 0.046 3.954 7 C 0.511 3.489 8 O -0.508 6.508 9 N -0.712 5.712 10 C 0.163 3.837 11 C -0.112 4.112 12 C -0.123 4.123 13 C -0.114 4.114 14 C -0.104 4.104 15 H 0.078 0.922 16 C 0.108 3.892 17 N -0.603 5.603 18 C -0.232 4.232 19 H 0.095 0.905 20 C 0.018 3.982 21 N -0.912 5.912 22 Si 0.884 3.116 23 H -0.286 1.286 24 H -0.303 1.303 25 H -0.276 1.276 26 C 0.142 3.858 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.396 0.604 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.028 0.972 44 H 0.071 0.929 45 H 0.262 0.738 46 H 0.062 0.938 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.062 -24.964 -4.310 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.172 4.172 3 C -0.131 4.131 4 C -0.011 4.011 5 O -0.280 6.280 6 C -0.034 4.034 7 C 0.295 3.705 8 O -0.381 6.381 9 N -0.365 5.365 10 C 0.076 3.924 11 C -0.151 4.151 12 C -0.160 4.160 13 C -0.152 4.152 14 C -0.124 4.124 15 H 0.096 0.904 16 C -0.017 4.017 17 N -0.329 5.329 18 C -0.359 4.359 19 H 0.112 0.888 20 C -0.180 4.180 21 N -0.557 5.557 22 Si 0.715 3.285 23 H -0.213 1.213 24 H -0.231 1.231 25 H -0.202 1.202 26 C 0.015 3.985 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.230 0.770 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.045 0.955 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -3.309 -23.954 -5.074 24.708 hybrid contribution 0.197 -0.968 1.798 2.052 sum -3.112 -24.921 -3.276 25.328 Atomic orbital electron populations 1.23926 0.95919 1.02116 1.00487 1.22800 0.96021 0.97951 1.00475 1.20642 0.98004 0.95930 0.98549 1.22481 0.93983 0.86099 0.98584 1.88016 1.54356 1.37252 1.48369 1.22204 0.93077 0.96206 0.91946 1.20118 0.79876 0.87988 0.82501 1.90754 1.62261 1.51832 1.33258 1.45900 1.40777 1.19469 1.30396 1.21676 0.92701 0.82379 0.95641 1.22664 0.93715 1.02856 0.95839 1.22576 0.96997 0.99426 0.97037 1.22500 0.95426 1.02014 0.95261 1.22766 0.94693 0.98860 0.96106 0.90398 1.22256 0.94825 0.91663 0.92948 1.45258 1.45261 1.01986 1.40422 1.18693 1.37644 0.77804 1.01801 0.88776 1.24961 1.00224 0.94987 0.97801 1.69819 1.49385 1.04710 1.31750 0.86974 0.77834 0.77494 0.86235 1.21340 1.23140 1.20162 1.21540 0.92495 0.88203 0.96276 0.88307 0.88329 0.87225 0.90353 0.89888 0.93127 0.93068 0.90566 0.90428 0.76996 0.89853 0.91363 0.91703 0.92272 0.92097 0.90120 0.95481 0.91139 0.92779 0.91935 0.96249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 14.32 29.02 0.42 -0.80 16 2 C -0.15 -1.06 9.52 -36.03 -0.34 -1.40 16 3 C -0.09 -0.79 6.03 -27.88 -0.17 -0.96 16 4 C 0.07 0.57 5.92 37.16 0.22 0.79 16 5 O -0.36 -4.56 9.88 -55.14 -0.54 -5.11 16 6 C 0.05 0.48 6.42 36.01 0.23 0.71 16 7 C 0.51 7.42 7.23 -10.98 -0.08 7.34 16 8 O -0.51 -9.77 14.48 -14.35 -0.21 -9.98 16 9 N -0.71 -9.47 5.20 -45.68 -0.24 -9.71 16 10 C 0.16 2.73 0.92 -129.73 -0.12 2.61 16 11 C -0.11 -1.85 5.53 -24.95 -0.14 -1.99 16 12 C -0.12 -1.69 6.92 -24.56 -0.17 -1.86 16 13 C -0.11 -1.73 6.22 -24.95 -0.16 -1.88 16 14 C -0.10 -1.69 3.62 -88.53 -0.32 -2.01 16 15 H 0.08 1.02 7.71 -51.93 -0.40 0.62 16 16 C 0.11 2.30 4.15 -2.07 -0.01 2.29 16 17 N -0.60 -14.82 3.25 -169.40 -0.55 -15.37 16 18 C -0.23 -6.71 10.67 -15.06 -0.16 -6.87 16 19 H 0.09 2.91 8.06 -52.49 -0.42 2.49 16 20 C 0.02 0.53 5.46 -17.43 -0.10 0.44 16 21 N -0.91 -28.43 13.97 55.49 0.78 -27.65 16 22 Si 0.88 22.65 24.35 -169.99 -4.14 18.51 16 23 H -0.29 -6.94 6.33 56.52 0.36 -6.59 16 24 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 25 H -0.28 -6.98 6.48 56.52 0.37 -6.62 16 26 C 0.14 3.06 5.28 -3.25 -0.02 3.04 16 27 H 0.10 0.64 7.84 -52.48 -0.41 0.23 16 28 H 0.10 0.51 8.06 -52.48 -0.42 0.09 16 29 H 0.11 0.61 8.06 -52.48 -0.42 0.19 16 30 H 0.08 0.72 7.79 -51.93 -0.40 0.32 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.40 3.82 8.29 -40.82 -0.34 3.48 16 37 H 0.08 1.57 7.56 -51.93 -0.39 1.18 16 38 H 0.07 1.14 6.69 -51.93 -0.35 0.79 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 43 H 0.03 0.59 6.21 -51.93 -0.32 0.27 16 44 H 0.07 1.60 5.25 -51.93 -0.27 1.33 16 45 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 46 H 0.06 1.45 7.55 -51.93 -0.39 1.06 16 47 H 0.02 0.44 8.06 -51.93 -0.42 0.02 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -34.65 367.40 -8.23 -42.88 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.96 Total: 1.44 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.91 Total: -0.55 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.01 Total: -52.73 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.75 Total: -15.09 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.14 Total: 18.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.65 -8.23 -42.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112014948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.232 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds