Wall clock time and date at job start Fri Apr 10 2020 22:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50698 * 120.00095 * 2 1 4 4 C 1.53000 * 109.47096 * 125.00242 * 3 2 1 5 5 O 1.42898 * 109.47182 * 180.02562 * 4 3 2 6 6 C 1.42902 * 114.00072 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47182 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99737 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00023 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00085 * 180.02562 * 9 7 6 11 11 C 1.54321 * 112.36114 * 299.33770 * 10 9 7 12 12 C 1.55055 * 103.94234 * 262.39332 * 11 10 9 13 13 C 1.55057 * 102.10719 * 319.94280 * 12 11 10 14 14 C 1.54325 * 103.93678 * 40.05503 * 13 12 11 15 15 H 1.08996 * 111.68893 * 97.20228 * 14 13 12 16 16 C 1.53777 * 109.06510 * 221.16783 * 14 13 12 17 17 N 1.49316 * 105.33484 * 95.07756 * 16 14 13 18 18 C 1.36942 * 126.54476 * 211.25902 * 17 16 14 19 19 H 1.07998 * 119.99937 * 162.18803 * 18 17 16 20 20 C 1.38810 * 119.99713 * 342.19875 * 18 17 16 21 21 N 1.31621 * 119.99630 * 159.96585 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 339.95767 * 20 18 17 23 23 H 1.48500 * 109.47267 * 84.71333 * 22 20 18 24 24 H 1.48507 * 109.47049 * 204.71363 * 22 20 18 25 25 H 1.48495 * 109.47473 * 324.71455 * 22 20 18 26 26 C 1.47218 * 106.75466 * 31.43278 * 17 16 14 27 27 H 1.08003 * 120.00172 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.00128 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99845 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46945 * 5.00225 * 3 2 1 31 31 H 1.08995 * 109.47434 * 244.99972 * 3 2 1 32 32 H 1.08996 * 109.47238 * 60.00162 * 4 3 2 33 33 H 1.09004 * 109.47290 * 300.00349 * 4 3 2 34 34 H 1.09004 * 109.46835 * 59.99705 * 6 5 4 35 35 H 1.08999 * 109.47172 * 300.00016 * 6 5 4 36 36 H 0.97008 * 119.99988 * 0.02562 * 9 7 6 37 37 H 1.09002 * 110.53293 * 143.77627 * 11 10 9 38 38 H 1.09002 * 110.53485 * 21.00981 * 11 10 9 39 39 H 1.08994 * 110.90527 * 201.73990 * 12 11 10 40 40 H 1.08999 * 110.90159 * 78.13786 * 12 11 10 41 41 H 1.08995 * 110.53413 * 158.66915 * 13 12 11 42 42 H 1.09002 * 110.53189 * 281.44589 * 13 12 11 43 43 H 1.08996 * 110.07426 * 214.12187 * 16 14 13 44 44 H 1.09003 * 110.07131 * 335.66126 * 16 14 13 45 45 H 0.97007 * 119.99371 * 179.97438 * 21 20 18 46 46 H 1.09000 * 110.06851 * 209.29996 * 26 17 16 47 47 H 1.08994 * 110.11961 * 87.78511 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 8 3.7491 2.5708 1.1820 6 6 4.6878 2.7000 2.2517 7 6 5.3799 4.0351 2.1542 8 8 5.0968 4.8008 1.2573 9 7 6.3127 4.3787 3.0643 10 6 6.9851 5.6768 2.9699 11 6 7.7643 5.8396 1.6478 12 6 9.2238 5.4795 2.0276 13 6 9.3715 6.1459 3.4198 14 6 8.0172 5.8735 4.1078 15 1 8.0663 5.0045 4.7639 16 6 7.5769 7.1358 4.8677 17 7 6.6703 7.8643 3.9312 18 6 6.5001 9.2208 3.8511 19 1 6.0531 9.6578 2.9704 20 6 6.9022 10.0339 4.9017 21 7 7.1136 11.3169 4.6973 22 14 7.1432 9.3075 6.6057 23 1 8.5076 8.7306 6.7094 24 1 6.9777 10.3736 7.6262 25 1 6.1361 8.2409 6.8361 26 6 5.9933 6.8429 3.1153 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4026 -0.9313 32 1 3.7399 0.5065 1.0920 33 1 2.4773 1.2354 2.1130 34 1 5.4273 1.9019 2.1845 35 1 4.1640 2.6306 3.2050 36 1 6.5389 3.7663 3.7819 37 1 7.7042 6.8684 1.2929 38 1 7.3846 5.1510 0.8930 39 1 9.9282 5.9079 1.3147 40 1 9.3521 4.3993 2.0980 41 1 10.1847 5.6847 3.9802 42 1 9.5381 7.2180 3.3148 43 1 7.0421 6.8583 5.7760 44 1 8.4459 7.7452 5.1160 45 1 7.3942 11.8852 5.4316 46 1 5.7480 7.2500 2.1344 47 1 5.0870 6.5031 3.6164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112014948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:12 Heat of formation + Delta-G solvation = -58.461910 kcal Electronic energy + Delta-G solvation = -26077.787935 eV Core-core repulsion = 22453.821867 eV Total energy + Delta-G solvation = -3623.966068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.71314 -39.93196 -38.58909 -36.27643 -35.86039 -34.78096 -33.80794 -31.49780 -30.81851 -29.97556 -28.12171 -26.67269 -25.80033 -23.92560 -22.87012 -22.37776 -21.11200 -20.62291 -20.40573 -19.14407 -18.01323 -17.75625 -17.46532 -17.27942 -16.60188 -16.24653 -15.98188 -15.62197 -15.56568 -15.45457 -15.11680 -14.89691 -14.64475 -14.27484 -14.12050 -13.85671 -13.41010 -13.21300 -13.14093 -12.84665 -12.55893 -12.49626 -12.30193 -12.13938 -12.05607 -11.97636 -11.94905 -11.73749 -11.63803 -11.50812 -11.39238 -10.88086 -10.70461 -10.65526 -10.26294 -10.08900 -9.11720 -8.18434 -5.47675 1.26824 1.33749 1.38361 1.47537 1.63768 1.83061 2.39607 2.93035 3.06676 3.28498 3.33134 3.63643 3.74672 3.81390 4.01490 4.16983 4.20886 4.24766 4.29675 4.30013 4.35360 4.40480 4.46450 4.47258 4.51118 4.59430 4.67728 4.76381 4.87173 4.91381 4.91497 4.96324 4.99542 5.03830 5.10547 5.16739 5.21334 5.24668 5.50764 5.54873 5.70589 5.72686 5.86466 6.06811 6.13111 6.64936 6.67682 7.33590 7.47842 8.06742 9.01846 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.003036 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.812912 B = 9219.278905 C = 9857.871803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C -0.097 4.097 4 C 0.064 3.936 5 O -0.402 6.402 6 C 0.052 3.948 7 C 0.504 3.496 8 O -0.567 6.567 9 N -0.695 5.695 10 C 0.175 3.825 11 C -0.112 4.112 12 C -0.108 4.108 13 C -0.114 4.114 14 C -0.092 4.092 15 H 0.131 0.869 16 C 0.100 3.900 17 N -0.621 5.621 18 C -0.234 4.234 19 H 0.047 0.953 20 C -0.041 4.041 21 N -0.961 5.961 22 Si 0.956 3.044 23 H -0.257 1.257 24 H -0.309 1.309 25 H -0.267 1.267 26 C 0.143 3.857 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.128 0.872 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.421 0.579 37 H 0.041 0.959 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.043 0.957 43 H 0.035 0.965 44 H 0.057 0.943 45 H 0.263 0.737 46 H 0.024 0.976 47 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.547 -30.051 -2.034 30.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C -0.134 4.134 4 C -0.012 4.012 5 O -0.322 6.322 6 C -0.028 4.028 7 C 0.291 3.709 8 O -0.444 6.444 9 N -0.350 5.350 10 C 0.087 3.913 11 C -0.151 4.151 12 C -0.145 4.145 13 C -0.151 4.151 14 C -0.111 4.111 15 H 0.149 0.851 16 C -0.024 4.024 17 N -0.348 5.348 18 C -0.363 4.363 19 H 0.065 0.935 20 C -0.235 4.235 21 N -0.608 5.608 22 Si 0.783 3.217 23 H -0.182 1.182 24 H -0.237 1.237 25 H -0.192 1.192 26 C 0.016 3.984 27 H 0.110 0.890 28 H 0.133 0.867 29 H 0.146 0.854 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.136 0.864 35 H 0.124 0.876 36 H 0.260 0.740 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.043 0.957 47 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -1.779 -29.130 -2.773 29.315 hybrid contribution -0.388 0.675 0.944 1.224 sum -2.167 -28.454 -1.828 28.595 Atomic orbital electron populations 1.24083 0.96047 1.02639 1.00013 1.22835 0.96085 0.97712 1.00849 1.20651 0.97867 0.96389 0.98484 1.22642 0.94293 0.85355 0.98894 1.87974 1.55283 1.39389 1.49514 1.22305 0.93767 0.94117 0.92570 1.21046 0.79343 0.89136 0.81369 1.90748 1.63990 1.53952 1.35714 1.45647 1.40153 1.18175 1.30991 1.21304 0.91459 0.82268 0.96274 1.22559 0.96446 1.00378 0.95715 1.22546 0.94293 1.01476 0.96231 1.22488 0.95929 1.00279 0.96424 1.22807 0.94484 0.98099 0.95739 0.85124 1.22447 0.93541 0.93285 0.93134 1.45273 1.46721 1.01011 1.41788 1.18517 1.36899 0.80400 1.00459 0.93526 1.25696 1.00535 0.95327 1.01916 1.69970 1.51375 1.06501 1.32933 0.85820 0.79343 0.76680 0.79835 1.18242 1.23713 1.19189 1.21575 0.93678 0.89427 0.93679 0.88969 0.86731 0.85404 0.92127 0.90779 0.90725 0.91919 0.86434 0.87644 0.74048 0.94052 0.91684 0.91136 0.88657 0.88208 0.93853 0.94724 0.92481 0.92772 0.95714 0.97158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 14.32 67.79 0.97 -1.25 16 2 C -0.16 -1.88 9.52 25.65 0.24 -1.64 16 3 C -0.10 -1.56 6.03 29.85 0.18 -1.38 16 4 C 0.06 0.96 5.92 71.98 0.43 1.39 16 5 O -0.40 -9.49 9.88 -129.94 -1.28 -10.78 16 6 C 0.05 0.89 6.42 71.24 0.46 1.35 16 7 C 0.50 13.77 7.23 87.66 0.63 14.40 16 8 O -0.57 -22.36 14.48 16.02 0.23 -22.13 16 9 N -0.69 -16.23 5.20 -416.84 -2.17 -18.40 16 10 C 0.17 5.63 0.92 4.96 0.00 5.63 16 11 C -0.11 -3.69 5.53 31.75 0.18 -3.52 16 12 C -0.11 -2.63 6.92 32.00 0.22 -2.40 16 13 C -0.11 -3.04 6.22 31.75 0.20 -2.84 16 14 C -0.09 -2.63 3.62 -9.44 -0.03 -2.67 16 15 H 0.13 2.49 7.71 -2.39 -0.02 2.47 16 16 C 0.10 4.06 4.15 86.09 0.36 4.41 16 17 N -0.62 -31.48 3.25 -689.85 -2.24 -33.72 16 18 C -0.23 -14.36 10.67 84.03 0.90 -13.46 16 19 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 20 C -0.04 -2.49 5.46 84.86 0.46 -2.03 16 21 N -0.96 -62.62 13.97 21.65 0.30 -62.32 16 22 Si 0.96 47.14 24.35 68.60 1.67 48.81 16 23 H -0.26 -11.43 6.33 99.48 0.63 -10.80 16 24 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 25 H -0.27 -12.64 6.48 99.48 0.64 -12.00 16 26 C 0.14 6.42 5.28 86.50 0.46 6.88 16 27 H 0.09 1.16 7.84 -2.91 -0.02 1.14 16 28 H 0.11 0.95 8.06 -2.91 -0.02 0.93 16 29 H 0.13 1.06 8.06 -2.91 -0.02 1.04 16 30 H 0.06 1.15 7.79 -2.39 -0.02 1.13 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.42 5.72 8.29 -92.70 -0.77 4.95 16 37 H 0.04 1.68 7.56 -2.39 -0.02 1.66 16 38 H 0.06 2.17 6.69 -2.39 -0.02 2.15 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.04 1.49 7.58 -2.39 -0.02 1.47 16 43 H 0.04 1.38 6.21 -2.39 -0.01 1.37 16 44 H 0.06 2.47 5.25 -2.39 -0.01 2.46 16 45 H 0.26 16.17 8.31 -92.70 -0.77 15.40 16 46 H 0.02 1.26 7.55 -2.39 -0.02 1.24 16 47 H 0.01 0.49 8.06 -2.39 -0.02 0.47 16 Total: -1.00 -83.95 367.40 2.20 -81.75 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.04 Total: 13.92 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.65 Total: 2.87 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -4.11 Total: -114.44 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -1.05 Total: -32.91 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.67 Total: 48.81 kcal Total: -83.95 2.20 -81.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112014948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.284 kcal (2) G-P(sol) polarization free energy of solvation -83.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds