Wall clock time and date at job start Fri Apr 10 2020 22:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.52390 * 2 1 4 4 C 1.53090 * 109.57650 * 120.16645 * 2 1 3 5 5 O 1.42901 * 109.41462 * 177.54614 * 4 2 1 6 6 C 1.42906 * 114.09600 * 298.83939 * 5 4 2 7 7 C 1.53095 * 109.41743 * 61.15804 * 6 5 4 8 8 C 1.53178 * 109.51819 * 239.88131 * 2 1 3 9 9 H 1.08997 * 109.54463 * 303.00816 * 8 2 1 10 10 C 1.50701 * 109.54446 * 63.18348 * 8 2 1 11 11 O 1.21283 * 119.99762 * 35.28144 * 10 8 2 12 12 N 1.34777 * 120.00316 * 215.28069 * 10 8 2 13 13 C 1.46640 * 125.32603 * 354.97132 * 12 10 8 14 14 C 1.53694 * 108.01110 * 179.13107 * 13 12 10 15 15 H 1.09001 * 112.56295 * 105.90633 * 14 13 12 16 16 C 1.53719 * 109.33814 * 232.44614 * 14 13 12 17 17 N 1.46672 * 107.94707 * 93.74677 * 16 14 13 18 18 C 1.36936 * 125.34038 * 179.47341 * 17 16 14 19 19 H 1.08001 * 119.99584 * 0.02562 * 18 17 16 20 20 C 1.38809 * 119.99874 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00115 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99864 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47016 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47470 * 119.99800 * 22 20 18 25 25 H 1.48504 * 109.47002 * 239.99853 * 22 20 18 26 26 C 1.46771 * 109.31986 * 359.45142 * 17 16 14 27 27 C 1.53965 * 106.62843 * 18.51822 * 26 17 16 28 28 H 1.09002 * 113.60968 * 94.61710 * 27 26 17 29 29 C 1.46743 * 125.33198 * 174.93412 * 12 10 8 30 30 H 1.09000 * 109.47428 * 180.12023 * 1 2 3 31 31 H 1.09003 * 109.46956 * 300.11880 * 1 2 3 32 32 H 1.09000 * 109.47441 * 60.11814 * 1 2 3 33 33 H 1.09001 * 109.48034 * 297.52815 * 4 2 1 34 34 H 1.09003 * 109.48162 * 57.56042 * 4 2 1 35 35 H 1.08999 * 109.48231 * 181.14264 * 6 5 4 36 36 H 1.09007 * 109.48299 * 301.17742 * 6 5 4 37 37 H 1.08992 * 109.52361 * 182.48657 * 7 6 5 38 38 H 1.09002 * 109.51784 * 62.29534 * 7 6 5 39 39 H 1.09009 * 109.76187 * 298.76805 * 13 12 10 40 40 H 1.08998 * 109.76584 * 59.48875 * 13 12 10 41 41 H 1.09010 * 109.77247 * 213.36551 * 16 14 13 42 42 H 1.08998 * 109.77719 * 334.10044 * 16 14 13 43 43 H 0.97002 * 119.99637 * 179.97438 * 21 20 18 44 44 H 1.09005 * 110.03059 * 259.22577 * 26 17 16 45 45 H 1.09001 * 110.02703 * 137.80972 * 26 17 16 46 46 H 1.08995 * 110.00777 * 317.68786 * 29 12 10 47 47 H 1.08998 * 110.01320 * 79.01244 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0430 -0.7248 1.2471 5 8 3.4708 -0.7729 1.2149 6 6 4.0057 -1.4794 0.0938 7 6 3.5716 -0.7850 -1.1997 8 6 2.0418 -0.7245 -1.2488 9 1 1.6362 -1.7358 -1.2756 10 6 1.6064 0.0260 -2.4810 11 8 1.5495 1.2374 -2.4647 12 7 1.2801 -0.6489 -3.6011 13 6 1.4056 -2.0984 -3.7845 14 6 0.9034 -2.4441 -5.1953 15 1 1.7158 -2.6832 -5.8816 16 6 -0.1526 -3.5572 -5.1012 17 7 -1.4738 -2.9231 -5.0430 18 6 -2.6686 -3.5875 -4.9643 19 1 -2.6854 -4.6671 -4.9402 20 6 -3.8579 -2.8735 -4.9145 21 7 -3.8372 -1.5577 -4.9423 22 14 -5.4876 -3.7799 -4.8064 23 1 -5.2396 -5.2440 -4.7897 24 1 -6.1934 -3.3827 -3.5616 25 1 -6.3256 -3.4336 -5.9825 26 6 -1.3145 -1.4646 -5.0819 27 6 0.0966 -1.1900 -5.6331 28 1 0.1191 -1.0179 -6.7092 29 6 0.7430 -0.0485 -4.8276 30 1 -0.3634 -1.0276 0.0022 31 1 -0.3633 0.5157 0.8889 32 1 -0.3634 0.5120 -0.8910 33 1 1.7173 -0.1890 2.1387 34 1 1.6454 -1.7396 1.2671 35 1 5.0940 -1.4872 0.1546 36 1 3.6338 -2.5041 0.0987 37 1 3.9417 -1.3473 -2.0569 38 1 3.9771 0.2265 -1.2238 39 1 2.4499 -2.3938 -3.6824 40 1 0.8013 -2.6177 -3.0407 41 1 -0.0904 -4.1998 -5.9796 42 1 0.0133 -4.1477 -4.2002 43 1 -4.6684 -1.0588 -4.9078 44 1 -1.4098 -1.0517 -4.0776 45 1 -2.0643 -1.0245 -5.7395 46 1 -0.0064 0.7026 -4.5779 47 1 1.5486 0.4061 -5.4041 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049042012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:33 Heat of formation + Delta-G solvation = -81.310855 kcal Electronic energy + Delta-G solvation = -27344.343292 eV Core-core repulsion = 23719.386420 eV Total energy + Delta-G solvation = -3624.956872 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.89931 -40.55177 -39.18585 -36.61950 -35.42666 -34.14049 -33.25706 -31.80774 -31.19068 -28.31941 -27.54859 -27.00176 -26.49795 -24.33884 -23.33577 -21.96031 -21.61020 -20.79099 -20.12968 -18.89416 -18.29771 -17.54606 -17.19465 -16.95160 -16.61918 -15.99141 -15.91885 -15.63035 -15.49811 -15.13171 -14.86244 -14.75849 -14.39622 -13.98446 -13.73877 -13.52406 -13.38331 -13.31627 -13.19529 -13.07340 -12.98772 -12.79278 -12.72025 -12.44538 -12.02921 -11.96700 -11.89497 -11.85204 -11.66176 -11.60138 -11.42573 -11.26862 -10.95701 -10.74016 -10.40419 -9.64505 -8.88210 -7.80994 -5.22237 1.45423 1.45555 1.52378 1.56082 1.97860 2.48437 2.94073 3.25906 3.31607 3.49130 3.51685 3.65332 3.69218 3.84610 3.87103 3.97090 4.12111 4.23658 4.24202 4.33430 4.39678 4.41697 4.52447 4.55136 4.56776 4.60608 4.69688 4.74060 4.74905 4.82645 4.86271 4.89611 4.99871 5.03361 5.05007 5.09951 5.13852 5.21374 5.32529 5.41872 5.48088 5.62622 5.80218 6.23240 6.26500 6.49986 7.08955 7.10675 7.80341 8.41039 9.23305 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.016844 B = 0.004131 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.949073 B = 6776.880179 C = 7329.737145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 H 0.069 0.931 4 C 0.073 3.927 5 O -0.398 6.398 6 C 0.062 3.938 7 C -0.136 4.136 8 C -0.097 4.097 9 H 0.101 0.899 10 C 0.531 3.469 11 O -0.586 6.586 12 N -0.610 5.610 13 C 0.112 3.888 14 C -0.093 4.093 15 H 0.136 0.864 16 C 0.138 3.862 17 N -0.624 5.624 18 C -0.235 4.235 19 H 0.086 0.914 20 C -0.067 4.067 21 N -0.951 5.951 22 Si 0.975 3.025 23 H -0.262 1.262 24 H -0.297 1.297 25 H -0.293 1.293 26 C 0.184 3.816 27 C -0.113 4.113 28 H 0.111 0.889 29 C 0.123 3.877 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.024 0.976 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.058 0.942 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.244 0.756 44 H -0.023 1.023 45 H 0.050 0.950 46 H 0.042 0.958 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.420 -2.894 6.877 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.088 0.912 4 C -0.004 4.004 5 O -0.317 6.317 6 C -0.014 4.014 7 C -0.174 4.174 8 C -0.119 4.119 9 H 0.119 0.881 10 C 0.321 3.679 11 O -0.467 6.467 12 N -0.342 5.342 13 C -0.010 4.010 14 C -0.112 4.112 15 H 0.154 0.846 16 C 0.013 3.987 17 N -0.350 5.350 18 C -0.364 4.364 19 H 0.104 0.896 20 C -0.260 4.260 21 N -0.601 5.601 22 Si 0.804 3.196 23 H -0.186 1.186 24 H -0.224 1.224 25 H -0.220 1.220 26 C 0.059 3.941 27 C -0.133 4.133 28 H 0.129 0.871 29 C 0.000 4.000 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.136 0.864 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.053 0.947 44 H -0.005 1.005 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 17.328 -2.143 7.106 18.851 hybrid contribution -1.960 0.101 -0.384 2.000 sum 15.368 -2.043 6.722 16.898 Atomic orbital electron populations 1.21726 0.94773 1.02038 1.01631 1.21619 0.95926 1.00411 0.94606 0.91230 1.22683 0.80539 1.00344 0.96829 1.87915 1.20673 1.76955 1.46136 1.22767 1.00415 0.94846 0.83410 1.22135 0.91440 1.02818 1.01052 1.21457 0.98878 1.00204 0.91317 0.88065 1.20750 0.76129 0.87229 0.83806 1.90644 1.55867 1.15859 1.84302 1.48367 1.62869 1.09385 1.13567 1.22145 1.02353 0.79361 0.97157 1.22808 0.97737 0.94379 0.96232 0.84595 1.21383 0.84143 0.94383 0.98791 1.44566 1.01566 1.02289 1.86550 1.19503 0.83678 0.91299 1.41954 0.89635 1.25615 1.01136 0.96367 1.02853 1.70165 1.25409 1.05851 1.58711 0.85044 0.79648 0.78363 0.76516 1.18610 1.22425 1.22016 1.21062 0.92832 0.84347 0.95881 1.23136 0.95712 0.94244 1.00201 0.87056 1.21721 0.97279 0.95640 0.85396 0.92128 0.90515 0.95679 0.87325 0.91493 0.86411 0.91128 0.88339 0.91871 0.87590 0.92363 0.94684 0.94818 0.94678 1.00505 0.93231 0.93954 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 8.99 71.98 0.65 -3.37 16 2 C -0.11 -2.67 2.14 -10.70 -0.02 -2.69 16 3 H 0.07 2.05 7.76 -2.39 -0.02 2.03 16 4 C 0.07 1.41 6.13 72.01 0.44 1.85 16 5 O -0.40 -8.23 10.77 -148.98 -1.60 -9.83 16 6 C 0.06 0.94 6.84 72.01 0.49 1.44 16 7 C -0.14 -2.55 5.41 30.69 0.17 -2.38 16 8 C -0.10 -2.39 1.74 -11.42 -0.02 -2.41 16 9 H 0.10 2.28 6.86 -2.39 -0.02 2.26 16 10 C 0.53 17.42 5.84 87.66 0.51 17.93 16 11 O -0.59 -23.88 16.24 -3.04 -0.05 -23.93 16 12 N -0.61 -19.13 3.30 -817.66 -2.70 -21.83 16 13 C 0.11 2.87 5.55 86.59 0.48 3.35 16 14 C -0.09 -2.56 4.02 -9.49 -0.04 -2.60 16 15 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 16 C 0.14 4.95 6.62 86.59 0.57 5.52 16 17 N -0.62 -30.57 3.38 -697.59 -2.36 -32.93 16 18 C -0.24 -12.80 10.25 84.03 0.86 -11.94 16 19 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 20 C -0.07 -3.79 5.48 84.86 0.47 -3.32 16 21 N -0.95 -57.45 10.16 21.65 0.22 -57.23 16 22 Si 0.98 45.42 29.55 68.60 2.03 47.45 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 26 C 0.18 8.92 4.92 86.65 0.43 9.35 16 27 C -0.11 -3.89 4.17 -9.32 -0.04 -3.93 16 28 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 29 C 0.12 4.12 5.99 86.65 0.52 4.63 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.02 0.87 7.10 -2.39 -0.02 0.86 16 33 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.06 1.68 6.75 -2.39 -0.02 1.66 16 41 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.03 1.16 7.44 -2.39 -0.02 1.15 16 43 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 44 H -0.02 -1.28 7.71 -2.38 -0.02 -1.30 16 45 H 0.05 2.81 6.19 -2.39 -0.01 2.80 16 46 H 0.04 1.70 7.94 -2.39 -0.02 1.68 16 47 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -73.83 358.54 1.94 -71.90 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.94 Total: 15.00 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 5.47 Total: 11.42 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -4.84 Total: -112.00 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -1.65 Total: -33.76 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -73.83 1.94 -71.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049042012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.415 kcal (2) G-P(sol) polarization free energy of solvation -73.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds