Wall clock time and date at job start Fri Apr 10 2020 22:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.48081 * 2 1 4 4 C 1.53090 * 109.48046 * 239.96940 * 2 1 3 5 5 C 1.53176 * 109.16009 * 182.40862 * 4 2 1 6 6 H 1.09002 * 109.54855 * 297.11158 * 5 4 2 7 7 C 1.50704 * 109.54138 * 176.85136 * 5 4 2 8 8 O 1.21280 * 119.99708 * 325.19110 * 7 5 4 9 9 N 1.34780 * 120.00169 * 145.19426 * 7 5 4 10 10 C 1.46666 * 125.33615 * 185.20945 * 9 7 5 11 11 C 1.53727 * 107.94129 * 180.51918 * 10 9 7 12 12 H 1.09005 * 112.56397 * 139.71308 * 11 10 9 13 13 C 1.53687 * 109.34222 * 266.25005 * 11 10 9 14 14 N 1.47171 * 107.73412 * 128.69139 * 13 11 10 15 15 C 1.36938 * 125.25306 * 180.36321 * 14 13 11 16 16 H 1.07997 * 120.00407 * 184.24989 * 15 14 13 17 17 C 1.38817 * 119.99974 * 4.24764 * 15 14 13 18 18 N 1.31619 * 119.99852 * 354.46984 * 17 15 14 19 19 Si 1.86798 * 119.99933 * 174.46316 * 17 15 14 20 20 H 1.48503 * 109.47130 * 94.99983 * 19 17 15 21 21 H 1.48499 * 109.47205 * 215.00077 * 19 17 15 22 22 H 1.48504 * 109.47036 * 335.00046 * 19 17 15 23 23 C 1.46741 * 109.41172 * 359.65822 * 14 13 11 24 24 C 1.53927 * 106.72023 * 342.39911 * 23 14 13 25 25 H 1.09002 * 113.00963 * 150.83891 * 24 23 14 26 26 C 1.46776 * 125.33551 * 4.89363 * 9 7 5 27 27 C 1.53173 * 109.03752 * 56.98321 * 5 4 2 28 28 C 1.53087 * 109.16437 * 303.01571 * 27 5 4 29 29 O 1.42903 * 109.42558 * 57.60474 * 28 27 5 30 30 H 1.09001 * 109.47271 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47290 * 60.00487 * 1 2 3 32 32 H 1.09006 * 109.46882 * 300.00516 * 1 2 3 33 33 H 1.08999 * 109.52580 * 302.31500 * 4 2 1 34 34 H 1.09001 * 109.52052 * 62.44511 * 4 2 1 35 35 H 1.08998 * 109.77026 * 300.13259 * 10 9 7 36 36 H 1.08993 * 109.77783 * 60.89637 * 10 9 7 37 37 H 1.09002 * 109.76256 * 247.19804 * 13 11 10 38 38 H 1.09000 * 109.76018 * 7.91312 * 13 11 10 39 39 H 0.97001 * 119.99141 * 180.02562 * 18 17 15 40 40 H 1.09004 * 110.00438 * 223.08837 * 23 14 13 41 41 H 1.08993 * 110.01525 * 101.72204 * 23 14 13 42 42 H 1.08998 * 110.02727 * 280.79905 * 26 9 7 43 43 H 1.08996 * 110.02550 * 42.21923 * 26 9 7 44 44 H 1.09002 * 109.52059 * 62.92806 * 27 5 4 45 45 H 1.09006 * 109.52322 * 183.04617 * 27 5 4 46 46 H 1.09006 * 109.48343 * 177.59051 * 28 27 5 47 47 H 1.08996 * 109.48363 * 297.61652 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 3.5711 -0.7709 -1.2120 6 1 3.9690 0.2435 -1.2407 7 6 4.0800 -1.5476 -2.3990 8 8 3.4498 -2.4948 -2.8192 9 7 5.2354 -1.1896 -2.9935 10 6 5.7827 -1.7901 -4.2146 11 6 7.1159 -1.0923 -4.5290 12 1 7.8800 -1.7875 -4.8768 13 6 6.8657 0.0661 -5.5076 14 7 7.4918 1.2726 -4.9435 15 6 7.4788 2.5138 -5.5217 16 1 8.0247 3.3272 -5.0670 17 6 6.7639 2.7267 -6.6924 18 7 6.1888 1.7139 -7.3057 19 14 6.6178 4.4504 -7.3973 20 1 7.6723 4.6569 -8.4224 21 1 5.2809 4.6183 -8.0216 22 1 6.7843 5.4462 -6.3083 23 6 8.1171 0.9419 -3.6578 24 6 7.5026 -0.3919 -3.1966 25 1 8.1805 -0.9830 -2.5807 26 6 6.1399 -0.1333 -2.5241 27 6 4.0176 -1.4601 0.0810 28 6 3.4307 -0.7093 1.2791 29 8 2.0065 -0.6739 1.1666 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 1.6443 -1.7375 -1.2709 34 1 1.7139 -0.1849 -2.1398 35 1 5.9522 -2.8553 -4.0576 36 1 5.0868 -1.6451 -5.0408 37 1 7.3289 -0.1568 -6.4687 38 1 5.7936 0.2115 -5.6401 39 1 5.6896 1.8627 -8.1240 40 1 7.9041 1.7228 -2.9277 41 1 9.1941 0.8325 -3.7840 42 1 5.7560 0.8440 -2.8164 43 1 6.2438 -0.1852 -1.4403 44 1 3.6613 -2.4902 0.0864 45 1 5.1059 -1.4508 0.1416 46 1 3.7099 -1.2203 2.2006 47 1 3.8193 0.3089 1.2960 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049139089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:45 Heat of formation + Delta-G solvation = -62.354183 kcal Electronic energy + Delta-G solvation = -26912.939398 eV Core-core repulsion = 23288.804549 eV Total energy + Delta-G solvation = -3624.134849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.57692 -39.38366 -37.99109 -34.93853 -33.77899 -32.95518 -32.24858 -30.36541 -29.45449 -28.08614 -26.02840 -25.53266 -24.64580 -23.15914 -22.36144 -20.65274 -20.15891 -19.32843 -18.93120 -17.19174 -16.73498 -16.48501 -16.16411 -15.90516 -15.11575 -14.83452 -14.64641 -14.44247 -14.08848 -13.78962 -13.56072 -13.13918 -12.86825 -12.74446 -12.51962 -12.49842 -12.11626 -12.11088 -11.97967 -11.58645 -11.50998 -11.35246 -11.27185 -10.95210 -10.88804 -10.83356 -10.61520 -10.43903 -10.15153 -10.12683 -9.91972 -9.88948 -9.68675 -9.36361 -8.63839 -8.33097 -6.89068 -5.78377 -3.11604 2.76165 3.19174 3.35893 3.41521 3.43614 3.59117 4.43172 4.45193 4.53757 4.59840 4.73667 4.77961 4.94950 5.00332 5.05235 5.20404 5.22405 5.29091 5.34598 5.44644 5.45195 5.48987 5.54290 5.61590 5.62960 5.65984 5.74003 5.79765 5.85420 5.93484 5.94661 6.00112 6.13161 6.18233 6.24699 6.33859 6.50959 6.52905 6.60800 6.76628 7.06034 7.49521 7.54008 7.75695 7.77277 8.20030 8.34983 9.15525 9.76726 10.40558 11.33342 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.003861 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.526357 B = 7249.610779 C = 7937.172373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.060 0.940 4 C -0.133 4.133 5 C -0.105 4.105 6 H 0.091 0.909 7 C 0.533 3.467 8 O -0.547 6.547 9 N -0.607 5.607 10 C 0.120 3.880 11 C -0.123 4.123 12 H 0.090 0.910 13 C 0.185 3.815 14 N -0.603 5.603 15 C -0.233 4.233 16 H 0.078 0.922 17 C -0.005 4.005 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.147 3.853 24 C -0.111 4.111 25 H 0.089 0.911 26 C 0.112 3.888 27 C -0.143 4.143 28 C 0.066 3.934 29 O -0.381 6.381 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.253 0.747 40 H 0.037 0.963 41 H 0.021 0.979 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.038 -4.970 15.651 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 H 0.078 0.922 4 C -0.171 4.171 5 C -0.126 4.126 6 H 0.109 0.891 7 C 0.321 3.679 8 O -0.425 6.425 9 N -0.339 5.339 10 C -0.003 4.003 11 C -0.143 4.143 12 H 0.109 0.891 13 C 0.060 3.940 14 N -0.330 5.330 15 C -0.361 4.361 16 H 0.096 0.904 17 C -0.201 4.201 18 N -0.566 5.566 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.020 3.980 24 C -0.130 4.130 25 H 0.107 0.893 26 C -0.011 4.011 27 C -0.181 4.181 28 C -0.011 4.011 29 O -0.300 6.300 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.115 0.885 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.667 -5.472 15.389 16.986 hybrid contribution 0.293 1.062 -0.806 1.365 sum -4.375 -4.410 14.582 15.850 Atomic orbital electron populations 1.21756 0.92849 1.03075 1.02456 1.22115 0.95255 0.94937 0.84724 0.92239 1.22113 0.93090 1.03303 0.98623 1.21316 0.97488 1.00232 0.93591 0.89084 1.20101 0.79409 0.84276 0.84072 1.90668 1.57126 1.28967 1.65693 1.48304 1.21470 1.36990 1.27163 1.21821 0.95247 0.96474 0.86730 1.23156 0.95140 0.99006 0.96994 0.89134 1.21213 0.98250 0.81943 0.92581 1.44346 1.63818 1.06489 1.18363 1.19030 1.25853 0.85772 1.05412 0.90368 1.24814 0.99840 0.97568 0.97907 1.69965 1.38884 1.28486 1.19272 0.86138 0.77208 0.83757 0.78886 1.21614 1.21648 1.20615 1.21143 0.95299 0.92495 0.89069 1.22928 0.95337 0.98546 0.96227 0.89326 1.22109 0.89503 0.91712 0.97766 1.22125 1.01432 1.01059 0.93468 1.22531 0.81138 0.99591 0.97854 1.87923 1.20846 1.78121 1.43092 0.91693 0.90904 0.91849 0.89631 0.90462 0.92357 0.90969 0.93839 0.92911 0.93676 0.94483 0.96153 0.90352 0.91770 0.90223 0.90422 0.88533 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.56 37.16 0.36 -0.96 16 2 C 0.09 0.93 3.26 -26.69 -0.09 0.85 16 3 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.13 -1.66 4.42 -26.59 -0.12 -1.77 16 5 C -0.10 -1.34 2.08 -91.59 -0.19 -1.53 16 6 H 0.09 1.09 7.19 -51.93 -0.37 0.72 16 7 C 0.53 8.78 6.84 -10.98 -0.08 8.70 16 8 O -0.55 -10.76 16.53 5.56 0.09 -10.67 16 9 N -0.61 -9.96 3.31 -172.18 -0.57 -10.53 16 10 C 0.12 2.07 6.24 -3.57 -0.02 2.05 16 11 C -0.12 -2.16 4.01 -88.60 -0.36 -2.52 16 12 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 13 C 0.18 4.26 4.77 -3.32 -0.02 4.25 16 14 N -0.60 -14.53 3.39 -171.51 -0.58 -15.11 16 15 C -0.23 -6.23 10.24 -15.06 -0.15 -6.38 16 16 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 17 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 18 N -0.92 -26.39 10.28 55.49 0.57 -25.82 16 19 Si 0.91 21.60 29.56 -169.99 -5.02 16.57 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.15 2.76 6.41 -3.43 -0.02 2.74 16 24 C -0.11 -1.73 4.14 -88.25 -0.37 -2.09 16 25 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 26 C 0.11 1.67 5.31 -3.29 -0.02 1.66 16 27 C -0.14 -1.52 5.40 -26.60 -0.14 -1.67 16 28 C 0.07 0.62 6.84 37.20 0.25 0.87 16 29 O -0.38 -4.39 10.41 -35.23 -0.37 -4.76 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 1.19 7.76 -51.93 -0.40 0.78 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.39 7.44 -51.93 -0.39 1.00 16 37 H 0.04 1.13 7.54 -51.93 -0.39 0.74 16 38 H 0.05 1.38 6.45 -51.93 -0.34 1.05 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.04 0.67 7.97 -51.93 -0.41 0.26 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 1.35 7.76 -51.93 -0.40 0.95 16 43 H 0.06 0.76 7.58 -51.93 -0.39 0.37 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.08 0.73 7.85 -51.93 -0.41 0.33 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -31.58 361.20 -9.62 -41.20 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -8.13 Total: -0.28 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.05 Total: 3.96 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.58 Total: -51.47 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.27 Total: -15.43 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.58 -9.62 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049139089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.156 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds