Wall clock time and date at job start Fri Apr 10 2020 22:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.56388 * 2 1 4 4 C 1.54475 * 110.51376 * 122.68265 * 2 1 3 5 5 O 1.44424 * 104.80629 * 142.62135 * 4 2 1 6 6 C 1.44425 * 105.27437 * 319.49006 * 5 4 2 7 7 H 1.08997 * 110.46870 * 281.63036 * 6 5 4 8 8 C 1.50696 * 110.37323 * 159.34071 * 6 5 4 9 9 O 1.21283 * 120.00085 * 359.61572 * 8 6 5 10 10 N 1.34781 * 120.00315 * 179.61809 * 8 6 5 11 11 C 1.47664 * 134.45897 * 179.97438 * 10 8 6 12 12 C 1.53509 * 85.97608 * 204.28121 * 11 10 8 13 13 C 1.47667 * 134.45192 * 359.95205 * 10 8 6 14 14 C 1.52668 * 113.57519 * 91.01997 * 12 11 10 15 15 C 1.53343 * 109.11176 * 73.80503 * 14 12 11 16 16 N 1.46882 * 108.76102 * 52.40602 * 15 14 12 17 17 C 1.36930 * 120.46177 * 124.47227 * 16 15 14 18 18 H 1.07997 * 120.00630 * 333.01235 * 17 16 15 19 19 C 1.38814 * 119.99966 * 153.01028 * 17 16 15 20 20 N 1.31617 * 120.00486 * 144.78702 * 19 17 16 21 21 Si 1.86807 * 119.99795 * 324.78713 * 19 17 16 22 22 H 1.48495 * 109.47301 * 264.72841 * 21 19 17 23 23 H 1.48504 * 109.46664 * 24.72955 * 21 19 17 24 24 H 1.48504 * 109.46843 * 144.72545 * 21 19 17 25 25 C 1.46882 * 119.07086 * 304.74922 * 16 15 14 26 26 C 1.52677 * 113.55941 * 222.23425 * 12 11 10 27 27 C 1.54479 * 104.80305 * 40.50863 * 6 5 4 28 28 H 1.08993 * 109.47034 * 182.67780 * 1 2 3 29 29 H 1.09007 * 109.46673 * 302.67829 * 1 2 3 30 30 H 1.08993 * 109.47148 * 62.67361 * 1 2 3 31 31 H 1.09005 * 110.37472 * 261.45509 * 4 2 1 32 32 H 1.09001 * 110.37206 * 23.78938 * 4 2 1 33 33 H 1.08996 * 113.78603 * 90.01515 * 11 10 8 34 34 H 1.08995 * 113.79134 * 318.54382 * 11 10 8 35 35 H 1.09007 * 113.79433 * 41.45069 * 13 10 8 36 36 H 1.09000 * 113.79220 * 269.98242 * 13 10 8 37 37 H 1.09002 * 109.53198 * 313.91792 * 14 12 11 38 38 H 1.08997 * 109.53914 * 193.69481 * 14 12 11 39 39 H 1.08997 * 109.58447 * 292.62243 * 15 14 12 40 40 H 1.08999 * 109.71001 * 172.26197 * 15 14 12 41 41 H 0.97002 * 120.00497 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.59158 * 175.04128 * 25 16 15 43 43 H 1.08998 * 109.58747 * 295.47663 * 25 16 15 44 44 H 1.08999 * 109.53290 * 46.08187 * 26 12 11 45 45 H 1.09007 * 109.52707 * 166.30465 * 26 12 11 46 46 H 1.09010 * 110.51086 * 94.66712 * 27 6 5 47 47 H 1.08996 * 110.51254 * 217.37460 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0713 -0.7812 1.2177 5 8 3.2399 -1.4714 0.7237 6 6 2.8757 -1.9422 -0.5922 7 1 2.2569 -2.8365 -0.5194 8 6 4.1105 -2.2249 -1.4086 9 8 5.2094 -2.0400 -0.9299 10 7 3.9937 -2.6831 -2.6707 11 6 4.9540 -3.0557 -3.7287 12 6 3.8172 -2.7559 -4.7158 13 6 2.8540 -3.0142 -3.5493 14 6 3.8038 -1.3119 -5.2113 15 6 4.9514 -1.1127 -6.2087 16 7 4.8645 -2.1524 -7.2426 17 6 4.7977 -1.8106 -8.5669 18 1 4.3812 -0.8579 -8.8584 19 6 5.2656 -2.6889 -9.5347 20 7 4.6574 -2.7699 -10.6992 21 14 6.7585 -3.7558 -9.1846 22 1 7.9767 -3.0914 -9.7133 23 1 6.8962 -3.9483 -7.7185 24 1 6.5889 -5.0758 -9.8434 25 6 4.8439 -3.5636 -6.8357 26 6 3.7018 -3.7792 -5.8429 27 6 2.0713 -0.7813 -1.2181 28 1 -0.3633 -1.0265 0.0480 29 1 -0.3633 0.5549 0.8651 30 1 -0.3633 0.4717 -0.9129 31 1 2.3465 -0.0939 2.0178 32 1 1.3286 -1.4970 1.5701 33 1 5.2499 -4.1045 -3.7043 34 1 5.8009 -2.3749 -3.8135 35 1 2.0322 -2.3004 -3.4915 36 1 2.5254 -4.0506 -3.4717 37 1 3.9338 -0.6355 -4.3665 38 1 2.8535 -1.1040 -5.7030 39 1 5.9058 -1.1935 -5.6885 40 1 4.8696 -0.1293 -6.6716 41 1 4.9841 -3.3839 -11.3754 42 1 4.6889 -4.1942 -7.7111 43 1 5.7906 -3.8207 -6.3605 44 1 3.7621 -4.7857 -5.4289 45 1 2.7481 -3.6512 -6.3551 46 1 2.7219 -0.1469 -1.8203 47 1 1.2490 -1.1675 -1.8203 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050597513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:09:27 Heat of formation + Delta-G solvation = -18.293174 kcal Electronic energy + Delta-G solvation = -26765.024246 eV Core-core repulsion = 23142.800025 eV Total energy + Delta-G solvation = -3622.224221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99668 -39.85568 -37.92435 -36.10255 -33.90578 -32.57998 -31.29151 -30.55869 -30.09463 -27.22533 -26.62947 -26.29920 -24.21462 -23.51859 -22.78570 -21.09946 -20.82241 -19.44840 -18.18403 -17.45118 -16.62458 -16.45512 -16.27012 -15.68972 -15.29276 -15.09828 -14.87069 -14.23671 -14.21482 -13.86787 -13.67099 -13.48521 -13.40024 -13.17791 -12.94708 -12.62183 -12.31683 -12.20151 -12.03895 -11.87649 -11.68180 -11.61919 -11.54687 -11.21083 -11.03240 -10.75433 -10.64551 -10.41599 -10.25063 -10.08790 -9.96451 -9.91513 -9.47902 -9.35231 -8.67129 -8.44427 -7.00527 -6.05444 -3.26142 2.49236 2.62955 3.38493 3.50917 3.56146 3.66605 4.03149 4.28976 4.41694 4.44974 4.53520 4.55958 4.78174 4.84371 4.88549 4.94505 5.05284 5.09270 5.16518 5.25345 5.32770 5.33684 5.37087 5.39491 5.44214 5.46400 5.64890 5.66577 5.71350 5.76384 5.82334 5.85426 5.92629 6.04804 6.19750 6.30462 6.34958 6.42332 6.43933 6.62636 6.69423 6.74506 6.95815 7.67632 7.94657 8.13405 8.28692 8.94590 9.71813 10.12070 11.09349 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.028305 B = 0.003310 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.988379 B = 8458.334174 C = 8908.332069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 H 0.087 0.913 4 C 0.045 3.955 5 O -0.346 6.346 6 C 0.065 3.935 7 H 0.091 0.909 8 C 0.538 3.462 9 O -0.526 6.526 10 N -0.638 5.638 11 C 0.118 3.882 12 C -0.075 4.075 13 C 0.101 3.899 14 C -0.108 4.108 15 C 0.147 3.853 16 N -0.599 5.599 17 C -0.271 4.271 18 H 0.080 0.920 19 C 0.038 3.962 20 N -0.885 5.885 21 Si 0.835 3.165 22 H -0.294 1.294 23 H -0.253 1.253 24 H -0.295 1.295 25 C 0.145 3.855 26 C -0.123 4.123 27 C -0.139 4.139 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.021 0.979 40 H 0.064 0.936 41 H 0.262 0.738 42 H 0.067 0.933 43 H 0.028 0.972 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.402 1.288 20.133 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 H 0.105 0.895 4 C -0.032 4.032 5 O -0.264 6.264 6 C 0.003 3.997 7 H 0.109 0.891 8 C 0.326 3.674 9 O -0.402 6.402 10 N -0.375 5.375 11 C -0.004 4.004 12 C -0.076 4.076 13 C -0.022 4.022 14 C -0.147 4.147 15 C 0.021 3.979 16 N -0.323 5.323 17 C -0.399 4.399 18 H 0.098 0.902 19 C -0.163 4.163 20 N -0.526 5.526 21 Si 0.662 3.338 22 H -0.222 1.222 23 H -0.178 1.178 24 H -0.222 1.222 25 C 0.019 3.981 26 C -0.163 4.163 27 C -0.177 4.177 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.588 1.394 20.545 22.715 hybrid contribution 0.662 -0.706 -0.047 0.969 sum -8.926 0.689 20.498 22.368 Atomic orbital electron populations 1.21821 0.93656 1.02208 1.02421 1.22548 0.96771 1.00714 0.94483 0.89473 1.23607 0.87877 0.95064 0.96613 1.89275 1.34944 1.73625 1.28522 1.22749 0.93789 0.98428 0.84698 0.89120 1.19813 0.90208 0.77453 0.79908 1.90726 1.27927 1.52124 1.69404 1.49988 1.11498 1.64612 1.11417 1.23306 0.94602 1.00646 0.81797 1.21977 0.94147 0.98225 0.93234 1.23514 0.91238 1.00833 0.86598 1.21745 1.01653 0.92488 0.98796 1.20925 0.94159 0.93210 0.89592 1.44288 1.85431 0.99854 1.02683 1.18773 1.35714 1.05488 0.79917 0.90233 1.25219 0.98609 0.97516 0.94977 1.70083 1.37592 1.37347 1.07556 0.87627 0.87055 0.79495 0.79575 1.22161 1.17784 1.22201 1.21241 0.94242 0.86606 0.95996 1.21957 1.02275 0.95947 0.96145 1.23004 0.99997 0.96424 0.98302 0.92297 0.92191 0.91900 0.88667 0.91892 0.89826 0.89860 0.90090 0.89592 0.92656 0.91221 0.96092 0.91786 0.92816 0.91481 0.95421 0.92396 0.90988 0.89951 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 8.97 37.16 0.33 -0.46 16 2 C -0.13 -0.95 3.72 -89.05 -0.33 -1.28 16 3 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 4 C 0.05 0.39 7.18 37.93 0.27 0.66 16 5 O -0.35 -4.58 10.91 -54.45 -0.59 -5.17 16 6 C 0.06 0.74 3.48 -27.11 -0.09 0.65 16 7 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 8 C 0.54 8.07 7.31 -10.99 -0.08 7.99 16 9 O -0.53 -10.34 17.28 -13.66 -0.24 -10.57 16 10 N -0.64 -8.42 3.43 -180.27 -0.62 -9.04 16 11 C 0.12 1.66 7.62 -3.15 -0.02 1.64 16 12 C -0.07 -1.02 0.77 -154.43 -0.12 -1.13 16 13 C 0.10 1.07 7.53 -3.17 -0.02 1.04 16 14 C -0.11 -1.60 5.21 -26.72 -0.14 -1.74 16 15 C 0.15 2.74 6.38 -3.66 -0.02 2.71 16 16 N -0.60 -13.36 2.70 -172.51 -0.47 -13.82 16 17 C -0.27 -7.26 9.84 -15.06 -0.15 -7.40 16 18 H 0.08 2.28 8.05 -52.49 -0.42 1.86 16 19 C 0.04 1.05 4.85 -17.43 -0.08 0.96 16 20 N -0.89 -26.19 13.97 55.49 0.78 -25.42 16 21 Si 0.84 20.69 26.42 -169.99 -4.49 16.20 16 22 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 23 H -0.25 -5.88 4.81 56.52 0.27 -5.61 16 24 H -0.30 -7.38 7.11 56.52 0.40 -6.97 16 25 C 0.15 2.90 4.20 -3.91 -0.02 2.88 16 26 C -0.12 -1.88 5.24 -26.97 -0.14 -2.02 16 27 C -0.14 -1.24 5.59 -25.16 -0.14 -1.38 16 28 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.43 7.83 -51.93 -0.41 0.03 16 33 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 34 H 0.08 1.30 7.41 -51.93 -0.38 0.92 16 35 H 0.08 0.72 6.88 -51.93 -0.36 0.36 16 36 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 37 H 0.05 0.77 8.01 -51.93 -0.42 0.35 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.02 0.39 7.49 -51.93 -0.39 0.00 16 40 H 0.06 1.21 7.92 -51.93 -0.41 0.79 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.07 1.49 5.54 -51.93 -0.29 1.20 16 43 H 0.03 0.56 6.63 -51.93 -0.34 0.21 16 44 H 0.06 0.75 8.12 -51.93 -0.42 0.32 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.08 0.85 7.87 -51.92 -0.41 0.44 16 47 H 0.09 0.62 7.00 -51.93 -0.36 0.25 16 LS Contribution 359.95 15.07 5.42 5.42 Total: -1.00 -33.20 359.95 -9.06 -42.27 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -8.10 Total: -2.97 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -0.76 Total: 3.11 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.31 Total: -48.28 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.83 Total: -15.75 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.49 Total: 16.20 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.20 -9.06 -42.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050597513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.972 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds