Wall clock time and date at job start Fri Apr 10 2020 22:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 120.00208 * 2 1 4 4 N 1.34777 * 120.00291 * 179.97438 * 2 1 3 5 5 C 1.47022 * 125.64528 * 0.02824 * 4 2 1 6 6 C 1.54327 * 107.27336 * 178.90269 * 5 4 2 7 7 C 1.55165 * 102.94078 * 337.80587 * 6 5 4 8 8 H 1.09001 * 111.00003 * 277.43047 * 7 6 5 9 9 C 1.50698 * 111.00281 * 153.57654 * 7 6 5 10 10 O 1.21275 * 120.00295 * 359.97438 * 9 7 6 11 11 N 1.34776 * 119.99711 * 180.02562 * 9 7 6 12 12 C 1.46933 * 120.63198 * 359.72169 * 11 9 7 13 13 C 1.52759 * 109.00518 * 233.58277 * 12 11 9 14 14 C 1.53039 * 109.38413 * 305.58592 * 13 12 11 15 15 C 1.53003 * 109.45964 * 181.26032 * 14 13 12 16 16 C 1.50706 * 109.46715 * 64.93422 * 15 14 13 17 17 H 1.07997 * 120.00469 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99500 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99994 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99513 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47340 * 89.99881 * 20 18 16 22 22 H 1.48505 * 109.46672 * 209.99576 * 20 18 16 23 23 H 1.48497 * 109.47307 * 329.99461 * 20 18 16 24 24 C 1.53034 * 109.53916 * 61.24258 * 14 13 12 25 25 C 1.46930 * 120.63091 * 179.97438 * 11 9 7 26 26 C 1.47425 * 125.65136 * 179.97438 * 4 2 1 27 27 H 1.09006 * 109.47095 * 270.00063 * 1 2 3 28 28 H 1.08998 * 109.47147 * 29.99969 * 1 2 3 29 29 H 1.09001 * 109.46984 * 150.00616 * 1 2 3 30 30 H 1.08997 * 109.88723 * 59.48678 * 5 4 2 31 31 H 1.08998 * 109.88661 * 298.31659 * 5 4 2 32 32 H 1.08993 * 110.72079 * 96.16743 * 6 5 4 33 33 H 1.09002 * 110.72173 * 219.44580 * 6 5 4 34 34 H 1.09004 * 109.58191 * 353.41894 * 12 11 9 35 35 H 1.08998 * 109.58733 * 113.84225 * 12 11 9 36 36 H 1.09001 * 109.56220 * 185.55198 * 13 12 11 37 37 H 1.09007 * 109.36033 * 65.49844 * 13 12 11 38 38 H 1.08999 * 109.44817 * 301.22615 * 14 13 12 39 39 H 1.08995 * 109.47321 * 184.92838 * 15 14 13 40 40 H 1.08994 * 109.47093 * 304.93340 * 15 14 13 41 41 H 0.97003 * 119.99988 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.50244 * 178.68219 * 24 14 13 43 43 H 1.09002 * 109.50034 * 58.58431 * 24 14 13 44 44 H 1.08994 * 109.58691 * 246.15634 * 25 11 9 45 45 H 1.08998 * 109.58349 * 6.58458 * 25 11 9 46 46 H 1.08997 * 110.36855 * 323.00479 * 26 4 2 47 47 H 1.08997 * 110.36655 * 85.33352 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5747 -2.5066 0.0005 6 6 2.7280 -3.5316 -0.0270 7 6 3.9080 -2.7113 -0.6121 8 1 3.8581 -2.6769 -1.7004 9 6 5.2317 -3.2651 -0.1514 10 8 5.2630 -4.2306 0.5818 11 7 6.3807 -2.6867 -0.5535 12 6 6.3592 -1.5195 -1.4457 13 6 7.2408 -1.8053 -2.6601 14 6 8.6391 -2.2106 -2.1885 15 6 9.5326 -2.4668 -3.4038 16 6 9.7243 -1.1810 -4.1662 17 1 9.2555 -0.2722 -3.8189 18 6 10.4975 -1.1652 -5.3077 19 7 11.0680 -2.2720 -5.7309 20 14 10.7358 0.4286 -6.2523 21 1 11.9315 1.1388 -5.7315 22 1 10.9285 0.1259 -7.6933 23 1 9.5368 1.2883 -6.0832 24 6 8.5459 -3.4851 -1.3466 25 6 7.6790 -3.2148 -0.1124 26 6 3.6480 -1.3123 0.0001 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5137 30 1 0.9481 -2.6300 -0.8827 31 1 0.9785 -2.6437 0.9026 32 1 2.9607 -3.8774 0.9801 33 1 2.4823 -4.3713 -0.6771 34 1 5.3373 -1.3296 -1.7742 35 1 6.7429 -0.6476 -0.9161 36 1 7.3106 -0.9107 -3.2790 37 1 6.8032 -2.6171 -3.2412 38 1 9.0659 -1.4083 -1.5867 39 1 10.5011 -2.8395 -3.0707 40 1 9.0618 -3.2064 -4.0514 41 1 11.6122 -2.2608 -6.5338 42 1 9.5446 -3.7864 -1.0305 43 1 8.0961 -4.2812 -1.9400 44 1 8.1723 -2.4837 0.5280 45 1 7.5277 -4.1431 0.4386 46 1 4.1056 -0.5379 -0.6155 47 1 4.0341 -1.2662 1.0183 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568394757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:09:00 Heat of formation + Delta-G solvation = -85.710056 kcal Electronic energy + Delta-G solvation = -26122.338965 eV Core-core repulsion = 22497.191329 eV Total energy + Delta-G solvation = -3625.147636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.85055 -39.68142 -37.80275 -36.99679 -34.09931 -32.69550 -32.04979 -30.87999 -30.16166 -29.11824 -27.97031 -25.03245 -23.99681 -23.02129 -22.55929 -21.26372 -19.90855 -19.52941 -18.69553 -17.53705 -17.28648 -16.37654 -16.22747 -15.83817 -15.51252 -15.09942 -14.56103 -14.48291 -13.94147 -13.84889 -13.72490 -13.34717 -13.32093 -13.01687 -12.93808 -12.79787 -12.68902 -12.37534 -12.22708 -11.97046 -11.78094 -11.57852 -11.22727 -11.18605 -11.00469 -10.82474 -10.72254 -10.47332 -10.22961 -10.15312 -9.82270 -9.63893 -9.30655 -9.02068 -8.99666 -8.43337 -8.37223 -6.02261 -4.04438 2.32207 2.46833 2.66948 3.07863 3.29893 3.36841 3.39159 3.98387 4.12131 4.43514 4.46498 4.49021 4.71687 4.81598 4.88859 4.92324 5.03309 5.06692 5.16089 5.32503 5.35803 5.38001 5.43942 5.44580 5.46236 5.51564 5.61447 5.65897 5.73899 5.78450 5.91240 5.95266 6.02122 6.31920 6.34496 6.47383 6.61430 6.91718 6.94821 7.07154 7.15549 7.47113 7.64085 7.78088 7.83944 7.97199 8.14962 8.39390 9.02150 9.59706 11.08956 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.003237 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.227522 B = 8647.614226 C = 9948.471416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.525 3.475 3 O -0.544 6.544 4 N -0.621 5.621 5 C 0.100 3.900 6 C -0.112 4.112 7 C -0.126 4.126 8 H 0.112 0.888 9 C 0.526 3.474 10 O -0.546 6.546 11 N -0.600 5.600 12 C 0.099 3.901 13 C -0.120 4.120 14 C -0.081 4.081 15 C 0.028 3.972 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.129 4.129 25 C 0.111 3.889 26 C 0.116 3.884 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.016 0.984 40 H 0.015 0.985 41 H 0.260 0.740 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.584 -1.391 11.920 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.315 3.685 3 O -0.421 6.421 4 N -0.357 5.357 5 C -0.023 4.023 6 C -0.150 4.150 7 C -0.148 4.148 8 H 0.130 0.870 9 C 0.313 3.687 10 O -0.425 6.425 11 N -0.332 5.332 12 C -0.024 4.024 13 C -0.158 4.158 14 C -0.100 4.100 15 C -0.009 4.009 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.167 4.167 25 C -0.011 4.011 26 C -0.007 4.007 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.181 -1.314 12.169 23.603 hybrid contribution 0.307 0.798 -0.803 1.173 sum -19.875 -0.516 11.366 22.901 Atomic orbital electron populations 1.21885 0.91191 1.04974 1.04771 1.20540 0.90440 0.81907 0.75597 1.90757 1.70753 1.30597 1.49964 1.48582 1.07134 1.06105 1.73835 1.22152 0.96595 0.81473 1.02118 1.22554 0.91827 0.96923 1.03724 1.22515 0.93554 0.96075 1.02654 0.86978 1.20047 0.84992 0.83225 0.80434 1.90668 1.87198 1.27238 1.37356 1.48179 1.05968 1.31120 1.47972 1.22003 1.01133 0.87311 0.91903 1.21837 0.95437 1.02973 0.95530 1.21194 0.95392 0.95111 0.98255 1.19119 0.93867 0.96937 0.90983 1.21239 1.30113 0.95175 1.09011 0.92577 1.25021 0.95842 0.96048 0.97534 1.69961 1.33036 1.26569 1.23910 0.86648 0.78557 0.83924 0.79194 1.20717 1.21306 1.19862 1.22033 0.99147 0.99667 0.95875 1.21714 0.82406 0.99705 0.97233 1.22225 0.81138 0.95672 1.01632 0.88809 0.88749 0.90100 0.90844 0.90821 0.88888 0.89213 0.90381 0.91184 0.89529 0.92278 0.92275 0.96586 0.96654 0.93032 0.91058 0.92069 0.91661 0.89603 0.89134 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 9.90 36.00 0.36 -0.65 16 2 C 0.53 5.57 7.96 -10.99 -0.09 5.48 16 3 O -0.54 -8.28 17.35 5.56 0.10 -8.19 16 4 N -0.62 -5.83 3.33 -170.52 -0.57 -6.40 16 5 C 0.10 0.63 6.16 -3.06 -0.02 0.61 16 6 C -0.11 -0.90 6.08 -24.89 -0.15 -1.05 16 7 C -0.13 -1.27 2.39 -89.62 -0.21 -1.48 16 8 H 0.11 1.05 7.52 -51.93 -0.39 0.65 16 9 C 0.53 7.07 7.06 -10.99 -0.08 6.99 16 10 O -0.55 -8.85 15.13 5.56 0.08 -8.77 16 11 N -0.60 -8.26 2.98 -173.00 -0.52 -8.78 16 12 C 0.10 1.30 5.63 -3.93 -0.02 1.28 16 13 C -0.12 -2.00 5.17 -26.84 -0.14 -2.13 16 14 C -0.08 -1.52 2.10 -90.58 -0.19 -1.71 16 15 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 16 C -0.52 -13.88 8.39 -34.44 -0.29 -14.17 16 17 H 0.06 1.45 7.05 -52.49 -0.37 1.08 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 20 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.13 -2.10 5.36 -26.59 -0.14 -2.25 16 25 C 0.11 1.60 6.44 -3.69 -0.02 1.57 16 26 C 0.12 1.21 5.71 -2.53 -0.01 1.20 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.31 7.06 -51.93 -0.37 -0.06 16 30 H 0.07 0.34 7.77 -51.93 -0.40 -0.06 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.87 7.38 -51.93 -0.38 0.48 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.88 4.62 -51.93 -0.24 0.64 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.56 6.91 -51.93 -0.36 1.20 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.09 1.26 7.00 -51.93 -0.36 0.89 16 46 H 0.09 1.02 6.44 -51.93 -0.33 0.68 16 47 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -33.66 366.99 -8.73 -42.39 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.84 Total: -2.02 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.24 Total: -4.26 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: -0.35 Total: -40.88 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.18 Total: -16.96 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.66 -8.73 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568394757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.319 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds