Wall clock time and date at job start Fri Apr 10 2020 22:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 120.00208 * 2 1 4 4 N 1.34777 * 120.00291 * 179.97438 * 2 1 3 5 5 C 1.47022 * 125.64528 * 0.02824 * 4 2 1 6 6 C 1.54327 * 107.27336 * 178.90269 * 5 4 2 7 7 C 1.55165 * 102.94078 * 337.80587 * 6 5 4 8 8 H 1.09001 * 111.00003 * 277.43047 * 7 6 5 9 9 C 1.50698 * 111.00281 * 153.57654 * 7 6 5 10 10 O 1.21275 * 120.00295 * 359.97438 * 9 7 6 11 11 N 1.34776 * 119.99711 * 180.02562 * 9 7 6 12 12 C 1.46933 * 120.63198 * 359.72169 * 11 9 7 13 13 C 1.52759 * 109.00518 * 233.58277 * 12 11 9 14 14 C 1.53039 * 109.38413 * 305.58592 * 13 12 11 15 15 C 1.53003 * 109.45964 * 181.26032 * 14 13 12 16 16 C 1.50706 * 109.46715 * 64.93422 * 15 14 13 17 17 H 1.07997 * 120.00469 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99500 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99994 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99513 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47340 * 89.99881 * 20 18 16 22 22 H 1.48505 * 109.46672 * 209.99576 * 20 18 16 23 23 H 1.48497 * 109.47307 * 329.99461 * 20 18 16 24 24 C 1.53034 * 109.53916 * 61.24258 * 14 13 12 25 25 C 1.46930 * 120.63091 * 179.97438 * 11 9 7 26 26 C 1.47425 * 125.65136 * 179.97438 * 4 2 1 27 27 H 1.09006 * 109.47095 * 270.00063 * 1 2 3 28 28 H 1.08998 * 109.47147 * 29.99969 * 1 2 3 29 29 H 1.09001 * 109.46984 * 150.00616 * 1 2 3 30 30 H 1.08997 * 109.88723 * 59.48678 * 5 4 2 31 31 H 1.08998 * 109.88661 * 298.31659 * 5 4 2 32 32 H 1.08993 * 110.72079 * 96.16743 * 6 5 4 33 33 H 1.09002 * 110.72173 * 219.44580 * 6 5 4 34 34 H 1.09004 * 109.58191 * 353.41894 * 12 11 9 35 35 H 1.08998 * 109.58733 * 113.84225 * 12 11 9 36 36 H 1.09001 * 109.56220 * 185.55198 * 13 12 11 37 37 H 1.09007 * 109.36033 * 65.49844 * 13 12 11 38 38 H 1.08999 * 109.44817 * 301.22615 * 14 13 12 39 39 H 1.08995 * 109.47321 * 184.92838 * 15 14 13 40 40 H 1.08994 * 109.47093 * 304.93340 * 15 14 13 41 41 H 0.97003 * 119.99988 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.50244 * 178.68219 * 24 14 13 43 43 H 1.09002 * 109.50034 * 58.58431 * 24 14 13 44 44 H 1.08994 * 109.58691 * 246.15634 * 25 11 9 45 45 H 1.08998 * 109.58349 * 6.58458 * 25 11 9 46 46 H 1.08997 * 110.36855 * 323.00479 * 26 4 2 47 47 H 1.08997 * 110.36655 * 85.33352 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5747 -2.5066 0.0005 6 6 2.7280 -3.5316 -0.0270 7 6 3.9080 -2.7113 -0.6121 8 1 3.8581 -2.6769 -1.7004 9 6 5.2317 -3.2651 -0.1514 10 8 5.2630 -4.2306 0.5818 11 7 6.3807 -2.6867 -0.5535 12 6 6.3592 -1.5195 -1.4457 13 6 7.2408 -1.8053 -2.6601 14 6 8.6391 -2.2106 -2.1885 15 6 9.5326 -2.4668 -3.4038 16 6 9.7243 -1.1810 -4.1662 17 1 9.2555 -0.2722 -3.8189 18 6 10.4975 -1.1652 -5.3077 19 7 11.0680 -2.2720 -5.7309 20 14 10.7358 0.4286 -6.2523 21 1 11.9315 1.1388 -5.7315 22 1 10.9285 0.1259 -7.6933 23 1 9.5368 1.2883 -6.0832 24 6 8.5459 -3.4851 -1.3466 25 6 7.6790 -3.2148 -0.1124 26 6 3.6480 -1.3123 0.0001 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5137 30 1 0.9481 -2.6300 -0.8827 31 1 0.9785 -2.6437 0.9026 32 1 2.9607 -3.8774 0.9801 33 1 2.4823 -4.3713 -0.6771 34 1 5.3373 -1.3296 -1.7742 35 1 6.7429 -0.6476 -0.9161 36 1 7.3106 -0.9107 -3.2790 37 1 6.8032 -2.6171 -3.2412 38 1 9.0659 -1.4083 -1.5867 39 1 10.5011 -2.8395 -3.0707 40 1 9.0618 -3.2064 -4.0514 41 1 11.6122 -2.2608 -6.5338 42 1 9.5446 -3.7864 -1.0305 43 1 8.0961 -4.2812 -1.9400 44 1 8.1723 -2.4837 0.5280 45 1 7.5277 -4.1431 0.4386 46 1 4.1056 -0.5379 -0.6155 47 1 4.0341 -1.2662 1.0183 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568394757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:59 Heat of formation + Delta-G solvation = -106.901989 kcal Electronic energy + Delta-G solvation = -26123.257916 eV Core-core repulsion = 22497.191329 eV Total energy + Delta-G solvation = -3626.066587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.79367 -40.62717 -38.97006 -37.99769 -35.73676 -34.12792 -33.30733 -32.05930 -30.75875 -30.13438 -29.41067 -26.54422 -24.99795 -24.24756 -23.76406 -22.52370 -21.09854 -20.44576 -19.77628 -18.53080 -18.38745 -18.06362 -17.27680 -16.72413 -16.52938 -16.45005 -16.02766 -15.33672 -15.30512 -14.99680 -14.77830 -14.51006 -14.41257 -14.26501 -13.98044 -13.84303 -13.55598 -13.37374 -13.27159 -13.01617 -12.96781 -12.77665 -12.60388 -12.48314 -12.40932 -12.24576 -12.10920 -11.86308 -11.75872 -11.36872 -11.15459 -11.06130 -10.85957 -10.77921 -10.52439 -9.75130 -9.65818 -8.17037 -6.26335 1.41374 1.41517 1.45214 1.52301 1.58759 1.82518 2.11498 2.42236 3.16862 3.25542 3.33264 3.65463 3.82238 3.87898 4.00700 4.06640 4.12157 4.17429 4.20822 4.25865 4.38484 4.44850 4.51412 4.58370 4.64514 4.65371 4.75133 4.78851 4.80969 4.87454 4.94788 4.97761 5.08715 5.09978 5.13920 5.24380 5.30614 5.31639 5.38012 5.52744 5.57899 5.80948 5.89292 6.28386 6.37564 6.46999 6.90645 7.06392 7.09333 7.42529 8.94891 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.003237 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.227522 B = 8647.614226 C = 9948.471416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.517 3.483 3 O -0.602 6.602 4 N -0.620 5.620 5 C 0.101 3.899 6 C -0.109 4.109 7 C -0.120 4.120 8 H 0.125 0.875 9 C 0.525 3.475 10 O -0.575 6.575 11 N -0.604 5.604 12 C 0.110 3.890 13 C -0.114 4.114 14 C -0.074 4.074 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.066 0.934 18 C -0.002 4.002 19 N -0.937 5.937 20 Si 0.958 3.042 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.260 1.260 24 C -0.121 4.121 25 C 0.118 3.882 26 C 0.116 3.884 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.061 0.939 39 H -0.014 1.014 40 H -0.014 1.014 41 H 0.261 0.739 42 H 0.071 0.929 43 H 0.049 0.951 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.289 -0.617 12.402 26.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.309 3.691 3 O -0.483 6.483 4 N -0.355 5.355 5 C -0.020 4.020 6 C -0.147 4.147 7 C -0.142 4.142 8 H 0.143 0.857 9 C 0.313 3.687 10 O -0.455 6.455 11 N -0.336 5.336 12 C -0.012 4.012 13 C -0.152 4.152 14 C -0.092 4.092 15 C -0.004 4.004 16 C -0.565 4.565 17 H 0.084 0.916 18 C -0.199 4.199 19 N -0.578 5.578 20 Si 0.783 3.217 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.184 1.184 24 C -0.159 4.159 25 C -0.004 4.004 26 C -0.007 4.007 27 H 0.129 0.871 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.004 0.996 40 H 0.005 0.995 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.917 -0.563 12.663 26.189 hybrid contribution 1.191 0.471 -0.934 1.585 sum -21.726 -0.092 11.729 24.690 Atomic orbital electron populations 1.21917 0.87366 1.06349 1.06282 1.21427 0.92222 0.81176 0.74312 1.90728 1.72181 1.32636 1.52767 1.48707 1.06666 1.07207 1.72884 1.22361 0.96072 0.78997 1.04607 1.22573 0.91437 0.97638 1.03037 1.22498 0.92279 0.96104 1.03304 0.85704 1.20604 0.85804 0.82590 0.79661 1.90656 1.87684 1.28518 1.38600 1.48255 1.06031 1.31269 1.48050 1.21923 1.01698 0.87265 0.90286 1.21714 0.94644 1.01954 0.96901 1.21039 0.95629 0.96427 0.96140 1.19010 0.93319 0.95366 0.92684 1.21672 1.29533 0.96171 1.09103 0.91623 1.25941 0.95706 0.99482 0.98817 1.70103 1.34112 1.28982 1.24579 0.85548 0.78943 0.79724 0.77463 1.20150 1.21239 1.18420 1.21905 0.99770 0.97900 0.96313 1.21595 0.82553 1.00247 0.96043 1.22101 0.82347 0.95452 1.00840 0.87062 0.88809 0.87285 0.88043 0.88622 0.90324 0.87719 0.87974 0.90182 0.90766 0.93116 0.92099 0.99582 0.99531 0.93034 0.91023 0.93256 0.90250 0.89700 0.90101 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.90 71.23 0.71 -0.68 16 2 C 0.52 9.97 7.96 87.66 0.70 10.67 16 3 O -0.60 -18.14 17.35 -3.04 -0.05 -18.19 16 4 N -0.62 -10.13 3.33 -811.80 -2.70 -12.83 16 5 C 0.10 0.89 6.16 86.73 0.53 1.43 16 6 C -0.11 -1.45 6.08 31.79 0.19 -1.25 16 7 C -0.12 -2.16 2.39 -10.15 -0.02 -2.19 16 8 H 0.13 1.98 7.52 -2.39 -0.02 1.96 16 9 C 0.52 13.42 7.06 87.66 0.62 14.04 16 10 O -0.57 -18.09 15.13 -3.01 -0.05 -18.13 16 11 N -0.60 -15.93 2.98 -819.66 -2.44 -18.37 16 12 C 0.11 2.75 5.63 86.22 0.49 3.23 16 13 C -0.11 -3.76 5.17 30.53 0.16 -3.60 16 14 C -0.07 -2.81 2.10 -10.77 -0.02 -2.83 16 15 C 0.03 1.69 4.45 29.85 0.13 1.82 16 16 C -0.53 -28.69 8.39 25.60 0.21 -28.48 16 17 H 0.07 3.38 7.05 -2.91 -0.02 3.36 16 18 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 19 N -0.94 -56.79 13.29 21.45 0.28 -56.50 16 20 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 C -0.12 -3.98 5.36 30.68 0.16 -3.81 16 25 C 0.12 3.29 6.44 86.37 0.56 3.84 16 26 C 0.12 2.25 5.71 86.85 0.50 2.75 16 27 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 0.32 7.06 -2.39 -0.02 0.30 16 30 H 0.10 0.42 7.77 -2.39 -0.02 0.40 16 31 H 0.10 0.50 8.14 -2.39 -0.02 0.49 16 32 H 0.08 1.31 7.38 -2.39 -0.02 1.30 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 2.09 4.62 -2.38 -0.01 2.08 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 2.64 6.91 -2.39 -0.02 2.62 16 37 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 40 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 41 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.08 2.43 7.00 -2.39 -0.02 2.42 16 46 H 0.08 1.72 6.44 -2.39 -0.02 1.71 16 47 H 0.06 1.34 8.03 -2.39 -0.02 1.32 16 Total: -1.00 -75.82 366.99 3.39 -72.43 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.95 Total: 10.62 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 5.37 Total: -4.72 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -4.86 Total: -87.71 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.10 Total: -36.32 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -75.82 3.39 -72.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568394757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.471 kcal (2) G-P(sol) polarization free energy of solvation -75.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds